RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 ZNF579Q8NAF0 562 aaKnown RBP9.74□□□□□ -0.85
NUP88-209ENST00000574855 GABBR2O75899 941 aa9.71□□□□□ -0.86
NUP88-209ENST00000574855 SPOCK2Q92563 424 aa9.71□□□□□ -0.86
NUP88-209ENST00000574855 FAM212AQ96EL1 285 aa9.71□□□□□ -0.86
NUP88-209ENST00000574855 DCAF8Q5TAQ9 597 aa9.69□□□□□ -0.86
NUP88-209ENST00000574855 PHF12Q96QT6 1004 aa9.68□□□□□ -0.86
NUP88-209ENST00000574855 CCDC61Q9Y6R9 512 aa9.68□□□□□ -0.86
NUP88-209ENST00000574855 GSE1Q14687 1217 aa9.65□□□□□ -0.86
NUP88-209ENST00000574855 KIF12Q96FN5 646 aa9.61□□□□□ -0.87
NUP88-209ENST00000574855 GALR2O43603 387 aaPredicted RBP9.59□□□□□ -0.87
NUP88-209ENST00000574855 CIZ1Q9ULV3 898 aaPredicted RBP9.59□□□□□ -0.87
NUP88-209ENST00000574855 MAP3K13O43283 966 aa9.57□□□□□ -0.88
NUP88-209ENST00000574855 MS4A3Q96HJ5 214 aa9.56□□□□□ -0.88
NUP88-209ENST00000574855 DCBLD2Q96PD2 775 aa9.56□□□□□ -0.88
NUP88-209ENST00000574855 SGIP1Q9BQI5 828 aa9.56□□□□□ -0.88
NUP88-209ENST00000574855 PYGBP11216 843 aa9.55□□□□□ -0.88
NUP88-209ENST00000574855 PCDHB13Q9Y5F0 798 aa9.54□□□□□ -0.88
NUP88-209ENST00000574855 CHRM1P11229 460 aaPredicted RBP9.52□□□□□ -0.89
NUP88-209ENST00000574855 TRIM41Q8WV44 630 aa9.49□□□□□ -0.89
NUP88-209ENST00000574855 IFNL1Q8IU54 200 aa9.48□□□□□ -0.89
NUP88-209ENST00000574855 POTEIP0CG38 1075 aa9.47□□□□□ -0.89
NUP88-209ENST00000574855 ZNF467Q7Z7K2 595 aaPredicted RBP9.45□□□□□ -0.9
NUP88-209ENST00000574855 TIE1P35590 1138 aa9.44□□□□□ -0.9
NUP88-209ENST00000574855 ASTLQ6HA08 431 aaPredicted RBP9.43□□□□□ -0.9
NUP88-209ENST00000574855 PCDHB8Q9UN66 801 aa9.43□□□□□ -0.9
NUP88-209ENST00000574855 ATMINO43313 823 aaPredicted RBP9.42□□□□□ -0.9
NUP88-209ENST00000574855 TRPC6Q9Y210 931 aa9.42□□□□□ -0.9
NUP88-209ENST00000574855 BMP2KQ9NSY1 1161 aaPredicted RBP9.41□□□□□ -0.9
NUP88-209ENST00000574855 TTLL13PA6NNM8 815 aa9.38□□□□□ -0.91
NUP88-209ENST00000574855 ATN1P54259 1190 aaPredicted RBP9.38□□□□□ -0.91
NUP88-209ENST00000574855 TMEM106CQ9BVX2 250 aa9.38□□□□□ -0.91
NUP88-209ENST00000574855 PELP1Q8IZL8 1130 aaKnown RBP9.37□□□□□ -0.91
NUP88-209ENST00000574855 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
NUP88-209ENST00000574855 PKD2Q13563 968 aa9.36□□□□□ -0.91
NUP88-209ENST00000574855 PDAP1Q13442 181 aaKnown RBP9.35□□□□□ -0.91
NUP88-209ENST00000574855 POTEMA6NI47 508 aa9.34□□□□□ -0.91
NUP88-209ENST00000574855 C7P10643 843 aa9.34□□□□□ -0.91
NUP88-209ENST00000574855 SLC39A7Q92504 469 aa9.34□□□□□ -0.91
NUP88-209ENST00000574855 RIOK3O14730 519 aaKnown RBP9.33□□□□□ -0.92
NUP88-209ENST00000574855 PSEN1P49768 467 aa9.33□□□□□ -0.92
NUP88-209ENST00000574855 TRIM35Q9UPQ4 493 aa9.32□□□□□ -0.92
NUP88-209ENST00000574855 RNF25Q96BH1 459 aaPredicted RBP9.3□□□□□ -0.92
NUP88-209ENST00000574855 METRNQ9UJH8 293 aa9.3□□□□□ -0.92
NUP88-209ENST00000574855 TAOK2Q9UL54 1235 aa9.3□□□□□ -0.92
NUP88-209ENST00000574855 VGFO15240 615 aaPredicted RBP9.28□□□□□ -0.92
NUP88-209ENST00000574855 GOLGA2Q08379 1002 aa9.28□□□□□ -0.92
NUP88-209ENST00000574855 IER5LQ5T953 404 aa9.28□□□□□ -0.92
NUP88-209ENST00000574855 POTEGQ6S5H5 508 aa9.28□□□□□ -0.92
NUP88-209ENST00000574855 SEC24BO95487 1268 aa9.26□□□□□ -0.93
NUP88-209ENST00000574855 RGL2O15211 777 aa9.25□□□□□ -0.93
NUP88-209ENST00000574855 MKRN3Q13064 507 aaKnown RBP9.24□□□□□ -0.93
NUP88-209ENST00000574855 PCDH10Q9P2E7 1040 aa9.24□□□□□ -0.93
NUP88-209ENST00000574855 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.22□□□□□ -0.93
NUP88-209ENST00000574855 ZFP91Q96JP5 570 aaPredicted RBP9.22□□□□□ -0.93
NUP88-209ENST00000574855 CABP2Q9NPB3 220 aa9.22□□□□□ -0.93
NUP88-209ENST00000574855 PLCG2P16885 1265 aa9.19□□□□□ -0.94
NUP88-209ENST00000574855 OCEL1Q9H607 264 aa9.19□□□□□ -0.94
NUP88-209ENST00000574855 COLQQ9Y215 455 aaPredicted RBP9.19□□□□□ -0.94
NUP88-209ENST00000574855 POTEFA5A3E0 1075 aa9.18□□□□□ -0.94
NUP88-209ENST00000574855 IRX5P78411 483 aaPredicted RBP9.18□□□□□ -0.94
NUP88-209ENST00000574855 OTUD5Q96G74 571 aa9.18□□□□□ -0.94
NUP88-209ENST00000574855 POTEB2H3BUK9 544 aa9.17□□□□□ -0.94
NUP88-209ENST00000574855 STK25O00506 426 aa9.17□□□□□ -0.94
NUP88-209ENST00000574855 AMER1Q5JTC6 1135 aaPredicted RBP9.16□□□□□ -0.94
NUP88-209ENST00000574855 BCL11BQ9C0K0 894 aaPredicted RBP9.16□□□□□ -0.94
NUP88-209ENST00000574855 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.16□□□□□ -0.941e-6■□□□□ 11.2
NUP88-209ENST00000574855 STK24Q9Y6E0 443 aa9.15□□□□□ -0.94
NUP88-209ENST00000574855 EFCAB3Q8N7B9 438 aa9.14□□□□□ -0.95
NUP88-209ENST00000574855 MAMSTRQ6ZN01 415 aa9.13□□□□□ -0.95
NUP88-209ENST00000574855 SOX12O15370 315 aa9.12□□□□□ -0.95
NUP88-209ENST00000574855 PDCD7Q8N8D1 485 aaKnown RBP9.11□□□□□ -0.95
NUP88-209ENST00000574855 ILDR1Q86SU0 546 aaPredicted RBP9.1□□□□□ -0.95
NUP88-209ENST00000574855 POTEJP0CG39 1038 aa9.09□□□□□ -0.95
NUP88-209ENST00000574855 RTN4Q9NQC3 1192 aaKnown RBP9.09□□□□□ -0.95
NUP88-209ENST00000574855 DCAF8L2P0C7V8 631 aa9.08□□□□□ -0.96
NUP88-209ENST00000574855 CHGAP10645 457 aaKnown RBP9.08□□□□□ -0.96
NUP88-209ENST00000574855 L3MBTL3Q96JM7 780 aaPredicted RBP9.08□□□□□ -0.96
NUP88-209ENST00000574855 SCUBE2Q9NQ36 999 aa9.08□□□□□ -0.96
NUP88-209ENST00000574855 HS6ST3Q8IZP7 471 aa9.07□□□□□ -0.96
NUP88-209ENST00000574855 NLRP6P59044 892 aa9.05□□□□□ -0.96
NUP88-209ENST00000574855 DPY19L2Q6NUT2 758 aa9.04□□□□□ -0.96
NUP88-209ENST00000574855 PHF8Q9UPP1 1060 aa9.04□□□□□ -0.96
NUP88-209ENST00000574855 G3V3G9 751 aa9.03□□□□□ -0.96
NUP88-209ENST00000574855 MFRPQ9BY79 579 aa9□□□□□ -0.97
NUP88-209ENST00000574855 BOLA1Q9Y3E2 137 aa9□□□□□ -0.97
NUP88-209ENST00000574855 FBXO22Q8NEZ5 403 aa8.99□□□□□ -0.97
NUP88-209ENST00000574855 MS4A4AQ96JQ5 239 aa8.99□□□□□ -0.97
NUP88-209ENST00000574855 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.99□□□□□ -0.97
NUP88-209ENST00000574855 C3orf67Q6ZVT6 689 aa8.98□□□□□ -0.97
NUP88-209ENST00000574855 DNAJC5Q9H3Z4 198 aa8.98□□□□□ -0.97
NUP88-209ENST00000574855 SLAIN1Q8ND83 568 aa8.96□□□□□ -0.98
NUP88-209ENST00000574855 TMEM121BQ9BXQ6 578 aaPredicted RBP8.95□□□□□ -0.98
NUP88-209ENST00000574855 RYDENQ9NUL5 291 aaKnown RBP8.94□□□□□ -0.98
NUP88-209ENST00000574855 MICALL2Q8IY33 904 aa8.92□□□□□ -0.98
NUP88-209ENST00000574855 NKX1-1Q15270 411 aaPredicted RBP8.91□□□□□ -0.98
NUP88-209ENST00000574855 LCE2DQ5TA82 110 aaPredicted RBP8.9□□□□□ -0.98
NUP88-209ENST00000574855 PPP1R37O75864 691 aa8.87□□□□□ -0.99
NUP88-209ENST00000574855 BBXQ8WY36 941 aaPredicted RBP8.86□□□□□ -0.99
NUP88-209ENST00000574855 SNPHO15079 494 aa8.85□□□□□ -0.99
NUP88-209ENST00000574855 GTPBP6O43824 516 aaPredicted RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms