RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	RNF39	Q9H2S5	420 aa		4.07	□□□□□ -1.76
CHD3-217	ENST00000574022	GTPBP6	O43824	516 aa	Predicted RBP	4.06	□□□□□ -1.76
CHD3-217	ENST00000574022	GSE1	Q14687	1217 aa		4.06	□□□□□ -1.76
CHD3-217	ENST00000574022	C1QBP	Q07021	282 aa	Known RBP	4.05	□□□□□ -1.76
CHD3-217	ENST00000574022	NKX1-1	Q15270	411 aa	Predicted RBP	4.05	□□□□□ -1.76
CHD3-217	ENST00000574022	OSCAR	Q8IYS5	282 aa		4.05	□□□□□ -1.76
CHD3-217	ENST00000574022	RIOK3	O14730	519 aa	Known RBP	4.04	□□□□□ -1.76
CHD3-217	ENST00000574022	C14orf37	Q86TY3	774 aa		4.04	□□□□□ -1.76
CHD3-217	ENST00000574022	RNF25	Q96BH1	459 aa	Predicted RBP	4.04	□□□□□ -1.76
CHD3-217	ENST00000574022	DCAF8	Q5TAQ9	597 aa		4.03	□□□□□ -1.76
CHD3-217	ENST00000574022	STK25	O00506	426 aa		4.02	□□□□□ -1.77
CHD3-217	ENST00000574022	HOMEZ	Q8IX15	550 aa		4.02	□□□□□ -1.77
CHD3-217	ENST00000574022	RYDEN	Q9NUL5	291 aa	Known RBP	4.01	□□□□□ -1.77
CHD3-217	ENST00000574022	VGF	O15240	615 aa	Predicted RBP	4	□□□□□ -1.77
CHD3-217	ENST00000574022	NUBP1	P53384	320 aa		4	□□□□□ -1.77
CHD3-217	ENST00000574022	P3H3	Q8IVL6	736 aa		4	□□□□□ -1.77
CHD3-217	ENST00000574022	DSG3	P32926	999 aa		3.99	□□□□□ -1.77
CHD3-217	ENST00000574022	WDR70	Q9NW82	654 aa		3.98	□□□□□ -1.77
CHD3-217	ENST00000574022	STK24	Q9Y6E0	443 aa		3.98	□□□□□ -1.77
CHD3-217	ENST00000574022	CHRM1	P11229	460 aa	Predicted RBP	3.97	□□□□□ -1.77
CHD3-217	ENST00000574022	LMOD2	Q6P5Q4	547 aa		3.97	□□□□□ -1.77
CHD3-217	ENST00000574022	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	3.97	□□□□□ -1.77
CHD3-217	ENST00000574022	FAM212A	Q96EL1	285 aa		3.97	□□□□□ -1.77
CHD3-217	ENST00000574022	BCL11B	Q9C0K0	894 aa	Predicted RBP	3.97	□□□□□ -1.77
CHD3-217	ENST00000574022	SGIP1	Q9BQI5	828 aa		3.96	□□□□□ -1.78
CHD3-217	ENST00000574022	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	3.95	□□□□□ -1.78
CHD3-217	ENST00000574022	ZFP91	Q96JP5	570 aa	Predicted RBP	3.95	□□□□□ -1.78
CHD3-217	ENST00000574022	BRPF1	P55201	1214 aa	Predicted RBP	3.94	□□□□□ -1.78
CHD3-217	ENST00000574022	KCNV2	Q8TDN2	545 aa		3.93	□□□□□ -1.78
CHD3-217	ENST00000574022	SUPT5H	O00267	1087 aa	Known RBP	3.92	□□□□□ -1.78
CHD3-217	ENST00000574022	NEUROD2	Q15784	382 aa		3.92	□□□□□ -1.78
CHD3-217	ENST00000574022	PYGB	P11216	843 aa		3.91	□□□□□ -1.78
CHD3-217	ENST00000574022	CADPS2	Q86UW7	1296 aa		3.91	□□□□□ -1.78
CHD3-217	ENST00000574022	RASEF	Q8IZ41	740 aa		3.91	□□□□□ -1.78
CHD3-217	ENST00000574022	ZC3H15	Q8WU90	426 aa	Known RBP	3.9	□□□□□ -1.79
CHD3-217	ENST00000574022	ARHGEF1	Q92888	912 aa	Known RBP	3.9	□□□□□ -1.79
CHD3-217	ENST00000574022	CREBZF	Q9NS37	354 aa		3.9	□□□□□ -1.79
CHD3-217	ENST00000574022	PRR29	P0C7W0	189 aa		3.89	□□□□□ -1.79
CHD3-217	ENST00000574022	MNX1	P50219	401 aa	Predicted RBP	3.89	□□□□□ -1.79
CHD3-217	ENST00000574022	SPDYE1	Q8NFV5	336 aa	Predicted RBP	3.89	□□□□□ -1.79
CHD3-217	ENST00000574022	SLC24A3	Q9HC58	644 aa		3.89	□□□□□ -1.79
CHD3-217	ENST00000574022	CLEC11A	Q9Y240	323 aa		3.88	□□□□□ -1.79
CHD3-217	ENST00000574022	E2F4	Q16254	413 aa		3.86	□□□□□ -1.79
CHD3-217	ENST00000574022	ZNF467	Q7Z7K2	595 aa	Predicted RBP	3.86	□□□□□ -1.79
CHD3-217	ENST00000574022	TESPA1	A2RU30	521 aa	Predicted RBP	3.85	□□□□□ -1.79
CHD3-217	ENST00000574022	SEMA3E	O15041	775 aa		3.85	□□□□□ -1.79
CHD3-217	ENST00000574022	SMYD5	Q6GMV2	418 aa		3.85	□□□□□ -1.79
CHD3-217	ENST00000574022	ZMYND10	O75800	440 aa		3.84	□□□□□ -1.79
CHD3-217	ENST00000574022	PDAP1	Q13442	181 aa	Known RBP	3.84	□□□□□ -1.79
CHD3-217	ENST00000574022	PODXL2	Q9NZ53	605 aa		3.84	□□□□□ -1.79
CHD3-217	ENST00000574022	AKT1S1	Q96B36	256 aa		3.83	□□□□□ -1.8
CHD3-217	ENST00000574022	MFRP	Q9BY79	579 aa		3.83	□□□□□ -1.8
CHD3-217	ENST00000574022	BARGIN	Q6ZT62	677 aa		3.82	□□□□□ -1.8
CHD3-217	ENST00000574022	ZMYND15	Q9H091	742 aa		3.82	□□□□□ -1.8
CHD3-217	ENST00000574022	PCDHB8	Q9UN66	801 aa		3.82	□□□□□ -1.8
CHD3-217	ENST00000574022	PCDHB13	Q9Y5F0	798 aa		3.82	□□□□□ -1.8
CHD3-217	ENST00000574022	PPP1R37	O75864	691 aa		3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	UBTF	P17480	764 aa	Known RBP	3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	RANGAP1	P46060	587 aa	Predicted RBP	3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	PSEN1	P49768	467 aa		3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	IL27	Q8NEV9	243 aa		3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	AK7	Q96M32	723 aa		3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	TSPYL2	Q9H2G4	693 aa	Predicted RBP	3.81	□□□□□ -1.8
CHD3-217	ENST00000574022	PDE4A	P27815	886 aa		3.8	□□□□□ -1.8
CHD3-217	ENST00000574022	NLRP6	P59044	892 aa		3.8	□□□□□ -1.8
CHD3-217	ENST00000574022	REM2	Q8IYK8	340 aa	Predicted RBP	3.8	□□□□□ -1.8
CHD3-217	ENST00000574022	KRI1	Q8N9T8	703 aa	Known RBP	3.8	□□□□□ -1.8
CHD3-217	ENST00000574022	RBM42	Q9BTD8	480 aa	Known RBP	3.8	□□□□□ -1.8
CHD3-217	ENST00000574022	RSPH6A	Q9H0K4	717 aa		3.8	□□□□□ -1.8
CHD3-217	ENST00000574022	SOX12	O15370	315 aa		3.79	□□□□□ -1.8
CHD3-217	ENST00000574022	LARP6	Q9BRS8	491 aa	Known RBP	3.79	□□□□□ -1.8
CHD3-217	ENST00000574022	EFCAB3	Q8N7B9	438 aa		3.78	□□□□□ -1.8
CHD3-217	ENST00000574022	ZNF579	Q8NAF0	562 aa	Known RBP	3.78	□□□□□ -1.8
CHD3-217	ENST00000574022	GPBP1L1	Q9HC44	474 aa	Predicted RBP	3.78	□□□□□ -1.8
CHD3-217	ENST00000574022	NCKAP5L	Q9HCH0	1330 aa		3.77	□□□□□ -1.81
CHD3-217	ENST00000574022	TRIM26	Q12899	539 aa	Predicted RBP	3.77	□□□□□ -1.81
CHD3-217	ENST00000574022	FBXO22	Q8NEZ5	403 aa		3.77	□□□□□ -1.81
CHD3-217	ENST00000574022	PHF8	Q9UPP1	1060 aa		3.77	□□□□□ -1.81
CHD3-217	ENST00000574022	ARIH1	Q9Y4X5	557 aa	Predicted RBP	3.77	□□□□□ -1.81
CHD3-217	ENST00000574022	RBM26	Q5T8P6	1007 aa	Known RBP	3.76	□□□□□ -1.81
CHD3-217	ENST00000574022	GPIHBP1	Q8IV16	184 aa		3.76	□□□□□ -1.81
CHD3-217	ENST00000574022	DDX27	Q96GQ7	796 aa	Known RBP	3.76	□□□□□ -1.81
CHD3-217	ENST00000574022	KDM4C	Q9H3R0	1056 aa		3.76	□□□□□ -1.81
CHD3-217	ENST00000574022	CABP2	Q9NPB3	220 aa		3.76	□□□□□ -1.81
CHD3-217	ENST00000574022	TRIM66	O15016	1216 aa		3.75	□□□□□ -1.81
CHD3-217	ENST00000574022	MFSD10	Q14728	455 aa		3.75	□□□□□ -1.81
CHD3-217	ENST00000574022	ARID3A	Q99856	593 aa		3.75	□□□□□ -1.81
CHD3-217	ENST00000574022	PITPNM1	O00562	1244 aa		3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	HRC	P23327	699 aa		3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	MLLT3	P42568	568 aa	Predicted RBP	3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	CACNB1	Q02641	598 aa	Predicted RBP	3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	PDE4D	Q08499	809 aa		3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	FARP1	Q9Y4F1	1045 aa	Predicted RBP	3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	CCDC61	Q9Y6R9	512 aa		3.74	□□□□□ -1.81
CHD3-217	ENST00000574022	CAMK2B	Q13554	666 aa		3.73	□□□□□ -1.81
CHD3-217	ENST00000574022	CHADL	Q6NUI6	762 aa		3.73	□□□□□ -1.81
CHD3-217	ENST00000574022	IFNL1	Q8IU54	200 aa		3.73	□□□□□ -1.81
CHD3-217	ENST00000574022	CRISPLD2	Q9H0B8	497 aa		3.73	□□□□□ -1.81
CHD3-217	ENST00000574022	ZNF316	A6NFI3	1004 aa	Predicted RBP	3.72	□□□□□ -1.81
CHD3-217	ENST00000574022	MKRN3	Q13064	507 aa	Known RBP	3.72	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms