RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ZNF579Q8NAF0 562 aaKnown RBP11.81□□□□□ -0.52
NUP88-202ENST00000570937 CCDC61Q9Y6R9 512 aa11.81□□□□□ -0.52
NUP88-202ENST00000570937 DCAF8Q5TAQ9 597 aa11.79□□□□□ -0.52
NUP88-202ENST00000570937 LHX8Q68G74 356 aa11.77□□□□□ -0.53
NUP88-202ENST00000570937 GABBR2O75899 941 aa11.76□□□□□ -0.53
NUP88-202ENST00000570937 CLCN6P51797 869 aa11.75□□□□□ -0.53
NUP88-202ENST00000570937 PHF12Q96QT6 1004 aa11.72□□□□□ -0.53
NUP88-202ENST00000570937 CIZ1Q9ULV3 898 aaPredicted RBP11.72□□□□□ -0.53
NUP88-202ENST00000570937 CHRM1P11229 460 aaPredicted RBP11.69□□□□□ -0.54
NUP88-202ENST00000570937 KIF12Q96FN5 646 aa11.69□□□□□ -0.54
NUP88-202ENST00000570937 TRIM41Q8WV44 630 aa11.68□□□□□ -0.54
NUP88-202ENST00000570937 SGIP1Q9BQI5 828 aa11.66□□□□□ -0.54
NUP88-202ENST00000570937 PYGBP11216 843 aa11.64□□□□□ -0.55
NUP88-202ENST00000570937 PKD2Q13563 968 aa11.64□□□□□ -0.55
NUP88-202ENST00000570937 MAP3K13O43283 966 aa11.63□□□□□ -0.55
NUP88-202ENST00000570937 MS4A3Q96HJ5 214 aa11.6□□□□□ -0.55
NUP88-202ENST00000570937 GALR2O43603 387 aaPredicted RBP11.59□□□□□ -0.55
NUP88-202ENST00000570937 PCDHB13Q9Y5F0 798 aa11.59□□□□□ -0.55
NUP88-202ENST00000570937 AMER1Q5JTC6 1135 aaPredicted RBP11.56□□□□□ -0.56
NUP88-202ENST00000570937 IFNL1Q8IU54 200 aa11.55□□□□□ -0.56
NUP88-202ENST00000570937 ECM2O94769 699 aaPredicted RBP11.54□□□□□ -0.56
NUP88-202ENST00000570937 ZNF467Q7Z7K2 595 aaPredicted RBP11.54□□□□□ -0.56
NUP88-202ENST00000570937 DCBLD2Q96PD2 775 aa11.52□□□□□ -0.57
NUP88-202ENST00000570937 POTEIP0CG38 1075 aa11.5□□□□□ -0.57
NUP88-202ENST00000570937 RNF25Q96BH1 459 aaPredicted RBP11.5□□□□□ -0.57
NUP88-202ENST00000570937 PCDHB8Q9UN66 801 aa11.5□□□□□ -0.57
NUP88-202ENST00000570937 RTN4Q9NQC3 1192 aaKnown RBP11.49□□□□□ -0.57
NUP88-202ENST00000570937 TIE1P35590 1138 aa11.47□□□□□ -0.57
NUP88-202ENST00000570937 TRPC6Q9Y210 931 aa11.47□□□□□ -0.57
NUP88-202ENST00000570937 RIOK3O14730 519 aaKnown RBP11.46□□□□□ -0.57
NUP88-202ENST00000570937 RGL2O15211 777 aa11.45□□□□□ -0.58
NUP88-202ENST00000570937 ASTLQ6HA08 431 aaPredicted RBP11.43□□□□□ -0.58
NUP88-202ENST00000570937 PDAP1Q13442 181 aaKnown RBP11.42□□□□□ -0.58
NUP88-202ENST00000570937 BMP2KQ9NSY1 1161 aaPredicted RBP11.42□□□□□ -0.58
NUP88-202ENST00000570937 TTLL13PA6NNM8 815 aa11.4□□□□□ -0.58
NUP88-202ENST00000570937 VGFO15240 615 aaPredicted RBP11.4□□□□□ -0.58
NUP88-202ENST00000570937 ATMINO43313 823 aaPredicted RBP11.4□□□□□ -0.58
NUP88-202ENST00000570937 PSEN1P49768 467 aa11.4□□□□□ -0.58
NUP88-202ENST00000570937 PLSCR2Q9NRY7 297 aa11.4□□□□□ -0.58
NUP88-202ENST00000570937 TAOK2Q9UL54 1235 aa11.4□□□□□ -0.58
NUP88-202ENST00000570937 TMEM106CQ9BVX2 250 aa11.38□□□□□ -0.59
NUP88-202ENST00000570937 ATN1P54259 1190 aaPredicted RBP11.36□□□□□ -0.59
NUP88-202ENST00000570937 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.33□□□□□ -0.6
NUP88-202ENST00000570937 ZFP91Q96JP5 570 aaPredicted RBP11.33□□□□□ -0.6
NUP88-202ENST00000570937 PELP1Q8IZL8 1130 aaKnown RBP11.32□□□□□ -0.6
NUP88-202ENST00000570937 TRIM35Q9UPQ4 493 aa11.31□□□□□ -0.6
NUP88-202ENST00000570937 SLC39A7Q92504 469 aa11.27□□□□□ -0.61
NUP88-202ENST00000570937 IER5LQ5T953 404 aa11.26□□□□□ -0.61
NUP88-202ENST00000570937 STK25O00506 426 aa11.25□□□□□ -0.61
NUP88-202ENST00000570937 BCL11BQ9C0K0 894 aaPredicted RBP11.25□□□□□ -0.61
NUP88-202ENST00000570937 C7P10643 843 aa11.24□□□□□ -0.61
NUP88-202ENST00000570937 HS6ST3Q8IZP7 471 aa11.24□□□□□ -0.61
NUP88-202ENST00000570937 CABP2Q9NPB3 220 aa11.24□□□□□ -0.61
NUP88-202ENST00000570937 GOLGA2Q08379 1002 aa11.22□□□□□ -0.61
NUP88-202ENST00000570937 STK24Q9Y6E0 443 aa11.22□□□□□ -0.61
NUP88-202ENST00000570937 METRNQ9UJH8 293 aa11.21□□□□□ -0.61
NUP88-202ENST00000570937 MKRN3Q13064 507 aaKnown RBP11.2□□□□□ -0.62
NUP88-202ENST00000570937 DCAF8L2P0C7V8 631 aa11.19□□□□□ -0.62
NUP88-202ENST00000570937 CHGAP10645 457 aaKnown RBP11.19□□□□□ -0.62
NUP88-202ENST00000570937 DNAJC5Q9H3Z4 198 aa11.19□□□□□ -0.62
NUP88-202ENST00000570937 IRX5P78411 483 aaPredicted RBP11.18□□□□□ -0.62
NUP88-202ENST00000570937 EFCAB3Q8N7B9 438 aa11.18□□□□□ -0.62
NUP88-202ENST00000570937 OTUD5Q96G74 571 aa11.18□□□□□ -0.62
NUP88-202ENST00000570937 ILDR1Q86SU0 546 aaPredicted RBP11.17□□□□□ -0.62
NUP88-202ENST00000570937 POTEFA5A3E0 1075 aa11.16□□□□□ -0.62
NUP88-202ENST00000570937 SOX12O15370 315 aa11.16□□□□□ -0.62
NUP88-202ENST00000570937 POTEB2H3BUK9 544 aa11.14□□□□□ -0.63
NUP88-202ENST00000570937 SEC24BO95487 1268 aa11.13□□□□□ -0.63
NUP88-202ENST00000570937 OCEL1Q9H607 264 aa11.13□□□□□ -0.63
NUP88-202ENST00000570937 COLQQ9Y215 455 aaPredicted RBP11.13□□□□□ -0.63
NUP88-202ENST00000570937 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.12□□□□□ -0.634e-7■□□□□ 8.8
NUP88-202ENST00000570937 PLCG2P16885 1265 aa11.11□□□□□ -0.63
NUP88-202ENST00000570937 PDCD7Q8N8D1 485 aaKnown RBP11.11□□□□□ -0.63
NUP88-202ENST00000570937 POTEMA6NI47 508 aa11.1□□□□□ -0.63
NUP88-202ENST00000570937 MFRPQ9BY79 579 aa11.08□□□□□ -0.64
NUP88-202ENST00000570937 PHF8Q9UPP1 1060 aa11.08□□□□□ -0.64
NUP88-202ENST00000570937 NLRP6P59044 892 aa11.07□□□□□ -0.64
NUP88-202ENST00000570937 FBXO22Q8NEZ5 403 aa11.07□□□□□ -0.64
NUP88-202ENST00000570937 NKX1-1Q15270 411 aaPredicted RBP11.06□□□□□ -0.64
NUP88-202ENST00000570937 POTEGQ6S5H5 508 aa11.04□□□□□ -0.64
NUP88-202ENST00000570937 BBXQ8WY36 941 aaPredicted RBP11.04□□□□□ -0.64
NUP88-202ENST00000570937 MS4A4AQ96JQ5 239 aa11.04□□□□□ -0.64
NUP88-202ENST00000570937 PCDH10Q9P2E7 1040 aa11.04□□□□□ -0.64
NUP88-202ENST00000570937 POTEJP0CG39 1038 aa11.02□□□□□ -0.65
NUP88-202ENST00000570937 DPY19L2Q6NUT2 758 aa11□□□□□ -0.65
NUP88-202ENST00000570937 RYDENQ9NUL5 291 aaKnown RBP11□□□□□ -0.65
NUP88-202ENST00000570937 L3MBTL3Q96JM7 780 aaPredicted RBP10.99□□□□□ -0.65
NUP88-202ENST00000570937 MAMSTRQ6ZN01 415 aa10.97□□□□□ -0.65
NUP88-202ENST00000570937 GTPBP6O43824 516 aaPredicted RBP10.96□□□□□ -0.65
NUP88-202ENST00000570937 TMEM121BQ9BXQ6 578 aaPredicted RBP10.94□□□□□ -0.66
NUP88-202ENST00000570937 BOLA1Q9Y3E2 137 aa10.94□□□□□ -0.66
NUP88-202ENST00000570937 SCUBE2Q9NQ36 999 aa10.93□□□□□ -0.66
NUP88-202ENST00000570937 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.93□□□□□ -0.66
NUP88-202ENST00000570937 PPP1R37O75864 691 aa10.9□□□□□ -0.66
NUP88-202ENST00000570937 MICALL2Q8IY33 904 aa10.9□□□□□ -0.66
NUP88-202ENST00000570937 G3V3G9 751 aa10.89□□□□□ -0.67
NUP88-202ENST00000570937 SPRYD3Q8NCJ5 442 aa10.87□□□□□ -0.67
NUP88-202ENST00000570937 C3orf67Q6ZVT6 689 aa10.85□□□□□ -0.67
NUP88-202ENST00000570937 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.85□□□□□ -0.67
NUP88-202ENST00000570937 LCE2DQ5TA82 110 aaPredicted RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 272.3 ms