RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	SLC39A7	Q92504	469 aa		14.59	□□□□□ -0.07
UBR1-209	ENST00000569243	ATMIN	O43313	823 aa	Predicted RBP	14.58	□□□□□ -0.08
UBR1-209	ENST00000569243	C7	P10643	843 aa		14.58	□□□□□ -0.08
UBR1-209	ENST00000569243	SPDYE4	A6NLX3	237 aa		14.57	□□□□□ -0.08
UBR1-209	ENST00000569243	MAMSTR	Q6ZN01	415 aa		14.54	□□□□□ -0.08
UBR1-209	ENST00000569243	FAM163A	Q96GL9	167 aa	Predicted RBP	14.53	□□□□□ -0.08
UBR1-209	ENST00000569243	LCE2D	Q5TA82	110 aa	Predicted RBP	14.5	□□□□□ -0.09
UBR1-209	ENST00000569243	CSRNP3	Q8WYN3	585 aa		14.45	□□□□□ -0.1
UBR1-209	ENST00000569243	SCUBE2	Q9NQ36	999 aa		14.45	□□□□□ -0.1
UBR1-209	ENST00000569243	ATN1	P54259	1190 aa	Predicted RBP	14.43	□□□□□ -0.1
UBR1-209	ENST00000569243	TSPYL2	Q9H2G4	693 aa	Predicted RBP	14.43	□□□□□ -0.1
UBR1-209	ENST00000569243	POTEF	A5A3E0	1075 aa		14.33	□□□□□ -0.12
UBR1-209	ENST00000569243	CCDC61	Q9Y6R9	512 aa		14.32	□□□□□ -0.12
UBR1-209	ENST00000569243	KIF12	Q96FN5	646 aa		14.3	□□□□□ -0.12
UBR1-209	ENST00000569243	BMP2K	Q9NSY1	1161 aa	Predicted RBP	14.3	□□□□□ -0.12
UBR1-209	ENST00000569243	TRPC6	Q9Y210	931 aa		14.29	□□□□□ -0.12
UBR1-209	ENST00000569243	CDAN1	Q8IWY9	1227 aa		14.21	□□□□□ -0.13
UBR1-209	ENST00000569243	MAP3K13	O43283	966 aa		14.19	□□□□□ -0.14
UBR1-209	ENST00000569243	COLQ	Q9Y215	455 aa	Predicted RBP	14.19	□□□□□ -0.14
UBR1-209	ENST00000569243	SEC24B	O95487	1268 aa		14.18	□□□□□ -0.14
UBR1-209	ENST00000569243	TIE1	P35590	1138 aa		14.18	□□□□□ -0.14
UBR1-209	ENST00000569243	TTLL13P	A6NNM8	815 aa		14.12	□□□□□ -0.15
UBR1-209	ENST00000569243	RASEF	Q8IZ41	740 aa		14.08	□□□□□ -0.16
UBR1-209	ENST00000569243	PROM2	Q8N271	834 aa		14.05	□□□□□ -0.16
UBR1-209	ENST00000569243	TRIM35	Q9UPQ4	493 aa		14.05	□□□□□ -0.16
UBR1-209	ENST00000569243	ST18	O60284	1047 aa		14.03	□□□□□ -0.16
UBR1-209	ENST00000569243	SLAIN1	Q8ND83	568 aa		14.03	□□□□□ -0.16
UBR1-209	ENST00000569243	PLEKHG5	O94827	1062 aa		14.01	□□□□□ -0.17
UBR1-209	ENST00000569243	MIER1	Q8N108	512 aa		14.01	□□□□□ -0.17
UBR1-209	ENST00000569243	IER5L	Q5T953	404 aa		14	□□□□□ -0.17
UBR1-209	ENST00000569243	EHMT2	Q96KQ7	1210 aa		13.98	□□□□□ -0.17
UBR1-209	ENST00000569243	PCDHB13	Q9Y5F0	798 aa		13.96	□□□□□ -0.17
UBR1-209	ENST00000569243	MMRN1	Q13201	1228 aa		13.91	□□□□□ -0.18
UBR1-209	ENST00000569243	SGIP1	Q9BQI5	828 aa		13.91	□□□□□ -0.18
UBR1-209	ENST00000569243	PLCG2	P16885	1265 aa		13.87	□□□□□ -0.19
UBR1-209	ENST00000569243	SPNS2	Q8IVW8	549 aa		13.87	□□□□□ -0.19
UBR1-209	ENST00000569243	IFNL1	Q8IU54	200 aa		13.86	□□□□□ -0.19
UBR1-209	ENST00000569243	TMEM106C	Q9BVX2	250 aa		13.86	□□□□□ -0.19
UBR1-209	ENST00000569243	PLCD3	Q8N3E9	789 aa		13.81	□□□□□ -0.2
UBR1-209	ENST00000569243	IRX5	P78411	483 aa	Predicted RBP	13.79	□□□□□ -0.2
UBR1-209	ENST00000569243	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.78	□□□□□ -0.2
UBR1-209	ENST00000569243	NUBP1	P53384	320 aa		13.77	□□□□□ -0.21
UBR1-209	ENST00000569243	MARVELD3	Q96A59	401 aa		13.77	□□□□□ -0.21
UBR1-209	ENST00000569243	SNPH	O15079	494 aa		13.72	□□□□□ -0.21
UBR1-209	ENST00000569243	OCEL1	Q9H607	264 aa		13.71	□□□□□ -0.21
UBR1-209	ENST00000569243	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.7	□□□□□ -0.22
UBR1-209	ENST00000569243	FAM212A	Q96EL1	285 aa		13.69	□□□□□ -0.22
UBR1-209	ENST00000569243	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.69	□□□□□ -0.22
UBR1-209	ENST00000569243	EMP3	P54852	163 aa		13.58	□□□□□ -0.24
UBR1-209	ENST00000569243	PYGB	P11216	843 aa		13.56	□□□□□ -0.24
UBR1-209	ENST00000569243	PCDHB8	Q9UN66	801 aa		13.54	□□□□□ -0.24
UBR1-209	ENST00000569243	DCAF8	Q5TAQ9	597 aa		13.53	□□□□□ -0.24
UBR1-209	ENST00000569243	KRTAP3-3	Q9BYR6	98 aa		13.52	□□□□□ -0.25
UBR1-209	ENST00000569243	KRTAP3-2	Q9BYR7	98 aa		13.52	□□□□□ -0.25
UBR1-209	ENST00000569243	POTEB3	A0JP26	581 aa		13.51	□□□□□ -0.25
UBR1-209	ENST00000569243	POTEB	Q6S5H4	581 aa		13.51	□□□□□ -0.25
UBR1-209	ENST00000569243	C3orf67	Q6ZVT6	689 aa		13.51	□□□□□ -0.25
UBR1-209	ENST00000569243	HS3ST6	Q96QI5	342 aa		13.51	□□□□□ -0.25
UBR1-209	ENST00000569243	FAM205C	A6NFA0	338 aa		13.5	□□□□□ -0.25
UBR1-209	ENST00000569243	PDCD7	Q8N8D1	485 aa	Known RBP	13.48	□□□□□ -0.25
UBR1-209	ENST00000569243	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.43	□□□□□ -0.26
UBR1-209	ENST00000569243	MKRN3	Q13064	507 aa	Known RBP	13.4	□□□□□ -0.26
UBR1-209	ENST00000569243	GOLGA2	Q08379	1002 aa		13.39	□□□□□ -0.27
UBR1-209	ENST00000569243	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.35	□□□□□ -0.27	4e-8	■■□□□ 12.9
UBR1-209	ENST00000569243	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.3	□□□□□ -0.28
UBR1-209	ENST00000569243	PSEN1	P49768	467 aa		13.24	□□□□□ -0.29
UBR1-209	ENST00000569243	DPY19L2	Q6NUT2	758 aa		13.24	□□□□□ -0.29
UBR1-209	ENST00000569243	HOXB3	P14651	431 aa	Predicted RBP	13.23	□□□□□ -0.29
UBR1-209	ENST00000569243	RNF166	Q96A37	237 aa	Predicted RBP	13.21	□□□□□ -0.29
UBR1-209	ENST00000569243	ZNF710	Q8N1W2	664 aa		13.2	□□□□□ -0.3
UBR1-209	ENST00000569243	ERBB3	P21860	1342 aa		13.19	□□□□□ -0.3
UBR1-209	ENST00000569243	FKBP8	Q14318	412 aa		13.19	□□□□□ -0.3
UBR1-209	ENST00000569243	GSE1	Q14687	1217 aa		13.19	□□□□□ -0.3
UBR1-209	ENST00000569243	HOXB1	P14653	301 aa	Predicted RBP	13.18	□□□□□ -0.3
UBR1-209	ENST00000569243		G3V3G9	751 aa		13.17	□□□□□ -0.3
UBR1-209	ENST00000569243	ILDR1	Q86SU0	546 aa	Predicted RBP	13.17	□□□□□ -0.3
UBR1-209	ENST00000569243	BOLA1	Q9Y3E2	137 aa		13.16	□□□□□ -0.3
UBR1-209	ENST00000569243	KLHL34	Q8N239	644 aa		13.13	□□□□□ -0.31
UBR1-209	ENST00000569243	CHRM1	P11229	460 aa	Predicted RBP	13.12	□□□□□ -0.31
UBR1-209	ENST00000569243	DOK7	Q18PE1	504 aa		13.11	□□□□□ -0.31
UBR1-209	ENST00000569243	MYT1L	Q9UL68	1186 aa		13.11	□□□□□ -0.31
UBR1-209	ENST00000569243	VARS2	Q5ST30	1063 aa	Known RBP	13.1	□□□□□ -0.31
UBR1-209	ENST00000569243	CABP2	Q9NPB3	220 aa		13.1	□□□□□ -0.31
UBR1-209	ENST00000569243	PDAP1	Q13442	181 aa	Known RBP	13.09	□□□□□ -0.31
UBR1-209	ENST00000569243	FBXO3	Q9UK99	471 aa		13.07	□□□□□ -0.32
UBR1-209	ENST00000569243	RIMBP2	O15034	1052 aa		13.03	□□□□□ -0.32
UBR1-209	ENST00000569243	ZNF687	Q8N1G0	1237 aa		12.98	□□□□□ -0.33
UBR1-209	ENST00000569243	VASP	P50552	380 aa	Predicted RBP	12.96	□□□□□ -0.33
UBR1-209	ENST00000569243	PTGER2	P43116	358 aa		12.9	□□□□□ -0.34
UBR1-209	ENST00000569243	ANKRD13D	Q6ZTN6	518 aa		12.89	□□□□□ -0.35
UBR1-209	ENST00000569243	ZSWIM6	Q9HCJ5	1215 aa		12.89	□□□□□ -0.35
UBR1-209	ENST00000569243	GPR153	Q6NV75	609 aa		12.88	□□□□□ -0.35
UBR1-209	ENST00000569243	TMEM92	Q6UXU6	159 aa		12.88	□□□□□ -0.35
UBR1-209	ENST00000569243	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.88	□□□□□ -0.35
UBR1-209	ENST00000569243	EFCAB3	Q8N7B9	438 aa		12.86	□□□□□ -0.35
UBR1-209	ENST00000569243	MICALL2	Q8IY33	904 aa		12.84	□□□□□ -0.35
UBR1-209	ENST00000569243	ARSI	Q5FYB1	569 aa		12.8	□□□□□ -0.36
UBR1-209	ENST00000569243	SPOCK2	Q92563	424 aa		12.76	□□□□□ -0.37
UBR1-209	ENST00000569243	LSM11	P83369	360 aa	Known RBP eCLIP	12.75	□□□□□ -0.37
UBR1-209	ENST00000569243	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms