RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
UBR1-208ENST00000569066 DCAF8Q5TAQ9 597 aa13.24□□□□□ -0.29
UBR1-208ENST00000569066 BCANQ96GW7 911 aa13.23□□□□□ -0.29
UBR1-208ENST00000569066 GSE1Q14687 1217 aa13.22□□□□□ -0.29
UBR1-208ENST00000569066 TRIM41Q8WV44 630 aa13.22□□□□□ -0.29
UBR1-208ENST00000569066 HS6ST3Q8IZP7 471 aa13.2□□□□□ -0.3
UBR1-208ENST00000569066 PRKCSHP14314 528 aaPredicted RBP13.2□□□□□ -0.3
UBR1-208ENST00000569066 RASEFQ8IZ41 740 aa13.2□□□□□ -0.3
UBR1-208ENST00000569066 PITPNM1O00562 1244 aa13.16□□□□□ -0.3
UBR1-208ENST00000569066 NKX1-1Q15270 411 aaPredicted RBP13.16□□□□□ -0.3
UBR1-208ENST00000569066 FAM212AQ96EL1 285 aa13.15□□□□□ -0.3
UBR1-208ENST00000569066 RIOK3O14730 519 aaKnown RBP13.14□□□□□ -0.31
UBR1-208ENST00000569066 TAOK2Q9UL54 1235 aa13.1□□□□□ -0.31
UBR1-208ENST00000569066 PYGBP11216 843 aa13.08□□□□□ -0.32
UBR1-208ENST00000569066 STK25O00506 426 aa13.08□□□□□ -0.32
UBR1-208ENST00000569066 CHADLQ6NUI6 762 aa13.05□□□□□ -0.32
UBR1-208ENST00000569066 DNAJC5Q9H3Z4 198 aa13.04□□□□□ -0.32
UBR1-208ENST00000569066 GTPBP6O43824 516 aaPredicted RBP13.02□□□□□ -0.33
UBR1-208ENST00000569066 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13□□□□□ -0.33
UBR1-208ENST00000569066 VGFO15240 615 aaPredicted RBP13□□□□□ -0.33
UBR1-208ENST00000569066 ZFP91Q96JP5 570 aaPredicted RBP13□□□□□ -0.33
UBR1-208ENST00000569066 BCL11BQ9C0K0 894 aaPredicted RBP13□□□□□ -0.33
UBR1-208ENST00000569066 CHRM1P11229 460 aaPredicted RBP12.98□□□□□ -0.33
UBR1-208ENST00000569066 STK24Q9Y6E0 443 aa12.97□□□□□ -0.33
UBR1-208ENST00000569066 TPRNQ4KMQ1 711 aa12.96□□□□□ -0.34
UBR1-208ENST00000569066 TSPYL2Q9H2G4 693 aaPredicted RBP12.95□□□□□ -0.34
UBR1-208ENST00000569066 FARP1Q9Y4F1 1045 aaPredicted RBP12.87□□□□□ -0.35
UBR1-208ENST00000569066 SGIP1Q9BQI5 828 aa12.86□□□□□ -0.35
UBR1-208ENST00000569066 PCDHB8Q9UN66 801 aa12.83□□□□□ -0.36
UBR1-208ENST00000569066 PCDHB13Q9Y5F0 798 aa12.83□□□□□ -0.36
UBR1-208ENST00000569066 PRKAR2AP13861 404 aaKnown RBP12.81□□□□□ -0.36
UBR1-208ENST00000569066 NBR1Q14596 966 aa12.79□□□□□ -0.36
UBR1-208ENST00000569066 CCDC61Q9Y6R9 512 aa12.78□□□□□ -0.36
UBR1-208ENST00000569066 ZNF467Q7Z7K2 595 aaPredicted RBP12.74□□□□□ -0.37
UBR1-208ENST00000569066 FXR2P51116 673 aaKnown RBP eCLIP12.72□□□□□ -0.37
UBR1-208ENST00000569066 CADPS2Q86UW7 1296 aa12.72□□□□□ -0.37
UBR1-208ENST00000569066 PDAP1Q13442 181 aaKnown RBP12.71□□□□□ -0.37
UBR1-208ENST00000569066 RYDENQ9NUL5 291 aaKnown RBP12.68□□□□□ -0.38
UBR1-208ENST00000569066 PSEN1P49768 467 aa12.67□□□□□ -0.38
UBR1-208ENST00000569066 MFRPQ9BY79 579 aa12.67□□□□□ -0.38
UBR1-208ENST00000569066 IFNL1Q8IU54 200 aa12.67□□□□□ -0.38
UBR1-208ENST00000569066 MAP3K13O43283 966 aa12.64□□□□□ -0.39
UBR1-208ENST00000569066 PIP4P2Q8N4L2 257 aa12.63□□□□□ -0.39
UBR1-208ENST00000569066 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
UBR1-208ENST00000569066 CHRDL2Q6WN34 429 aa12.62□□□□□ -0.39
UBR1-208ENST00000569066 PPP1R37O75864 691 aa12.59□□□□□ -0.39
UBR1-208ENST00000569066 KIF12Q96FN5 646 aa12.59□□□□□ -0.39
UBR1-208ENST00000569066 EFCAB3Q8N7B9 438 aa12.57□□□□□ -0.4
UBR1-208ENST00000569066 KCNV2Q8TDN2 545 aa12.57□□□□□ -0.4
UBR1-208ENST00000569066 CABP2Q9NPB3 220 aa12.57□□□□□ -0.4
UBR1-208ENST00000569066 PAK3O75914 559 aaPredicted RBP12.55□□□□□ -0.4
UBR1-208ENST00000569066 PHF8Q9UPP1 1060 aa12.54□□□□□ -0.4
UBR1-208ENST00000569066 FBXO22Q8NEZ5 403 aa12.53□□□□□ -0.4
UBR1-208ENST00000569066 PHF12Q96QT6 1004 aa12.53□□□□□ -0.4
UBR1-208ENST00000569066 ZRANB1Q9UGI0 708 aa12.5□□□□□ -0.41
UBR1-208ENST00000569066 CD44P16070 742 aaKnown RBP12.48□□□□□ -0.41
UBR1-208ENST00000569066 P3H3Q8IVL6 736 aa12.48□□□□□ -0.41
UBR1-208ENST00000569066 WDR70Q9NW82 654 aa12.48□□□□□ -0.41
UBR1-208ENST00000569066 TRPC6Q9Y210 931 aa12.45□□□□□ -0.42
UBR1-208ENST00000569066 NLRP6P59044 892 aa12.42□□□□□ -0.42
UBR1-208ENST00000569066 MS4A4AQ96JQ5 239 aa12.42□□□□□ -0.42
UBR1-208ENST00000569066 SOX12O15370 315 aa12.39□□□□□ -0.43
UBR1-208ENST00000569066 NCKAP5LQ9HCH0 1330 aa12.38□□□□□ -0.43
UBR1-208ENST00000569066 MS4A3Q96HJ5 214 aa12.36□□□□□ -0.43
UBR1-208ENST00000569066 TMEM106CQ9BVX2 250 aa12.36□□□□□ -0.43
UBR1-208ENST00000569066 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
UBR1-208ENST00000569066 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.34□□□□□ -0.43
UBR1-208ENST00000569066 E2F4Q16254 413 aa12.32□□□□□ -0.44
UBR1-208ENST00000569066 SEMA3EO15041 775 aa12.3□□□□□ -0.44
UBR1-208ENST00000569066 LARP6Q9BRS8 491 aaKnown RBP12.3□□□□□ -0.44
UBR1-208ENST00000569066 GOLGA2Q08379 1002 aa12.28□□□□□ -0.44
UBR1-208ENST00000569066 ARHGEF1Q92888 912 aaKnown RBP12.27□□□□□ -0.44
UBR1-208ENST00000569066 C19orf67A6NJJ6 358 aa12.25□□□□□ -0.45
UBR1-208ENST00000569066 CRISPLD2Q9H0B8 497 aa12.25□□□□□ -0.45
UBR1-208ENST00000569066 TTLL13PA6NNM8 815 aa12.22□□□□□ -0.45
UBR1-208ENST00000569066 MKRN3Q13064 507 aaKnown RBP12.22□□□□□ -0.45
UBR1-208ENST00000569066 MFSD10Q14728 455 aa12.2□□□□□ -0.46
UBR1-208ENST00000569066 DDX27Q96GQ7 796 aaKnown RBP12.2□□□□□ -0.46
UBR1-208ENST00000569066 TESPA1A2RU30 521 aaPredicted RBP12.19□□□□□ -0.46
UBR1-208ENST00000569066 BMP2KQ9NSY1 1161 aaPredicted RBP12.19□□□□□ -0.46
UBR1-208ENST00000569066 GALR2O43603 387 aaPredicted RBP12.18□□□□□ -0.46
UBR1-208ENST00000569066 PDE4AP27815 886 aa12.18□□□□□ -0.46
UBR1-208ENST00000569066 DPY19L2Q6NUT2 758 aa12.16□□□□□ -0.46
UBR1-208ENST00000569066 ZC3H15Q8WU90 426 aaKnown RBP12.16□□□□□ -0.46
UBR1-208ENST00000569066 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.16□□□□□ -0.465e-7■■■□□ 18.4
UBR1-208ENST00000569066 TRIM35Q9UPQ4 493 aa12.15□□□□□ -0.46
UBR1-208ENST00000569066 TIE1P35590 1138 aa12.14□□□□□ -0.47
UBR1-208ENST00000569066 EVX2Q03828 476 aa12.13□□□□□ -0.47
UBR1-208ENST00000569066 ILDR1Q86SU0 546 aaPredicted RBP12.13□□□□□ -0.47
UBR1-208ENST00000569066 TULP1O00294 542 aaPredicted RBP12.11□□□□□ -0.47
UBR1-208ENST00000569066 CAMK2BQ13554 666 aa12.11□□□□□ -0.47
UBR1-208ENST00000569066 TIMELESSQ9UNS1 1208 aa12.08□□□□□ -0.48
UBR1-208ENST00000569066 PPP1R15BQ5SWA1 713 aa12.08□□□□□ -0.48
UBR1-208ENST00000569066 SLC24A3Q9HC58 644 aa12.08□□□□□ -0.48
UBR1-208ENST00000569066 MLLT3P42568 568 aaPredicted RBP12.07□□□□□ -0.48
UBR1-208ENST00000569066 BRPF1P55201 1214 aaPredicted RBP12.07□□□□□ -0.48
UBR1-208ENST00000569066 PDCD7Q8N8D1 485 aaKnown RBP12.06□□□□□ -0.48
UBR1-208ENST00000569066 GPHNQ9NQX3 736 aaPredicted RBP12.06□□□□□ -0.48
UBR1-208ENST00000569066 ARIH1Q9Y4X5 557 aaPredicted RBP12.05□□□□□ -0.48
UBR1-208ENST00000569066 DSG2Q14126 1118 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms