RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SP7Q8TDD2 431 aaPredicted RBP7.4□□□□□ -1.22
VPS35-208ENST00000568612 PHF12Q96QT6 1004 aa7.4□□□□□ -1.22
VPS35-208ENST00000568612 GSE1Q14687 1217 aa7.39□□□□□ -1.23
VPS35-208ENST00000568612 ZNF579Q8NAF0 562 aaKnown RBP7.37□□□□□ -1.23
VPS35-208ENST00000568612 CCDC61Q9Y6R9 512 aa7.36□□□□□ -1.23
VPS35-208ENST00000568612 PYGBP11216 843 aa7.35□□□□□ -1.23
VPS35-208ENST00000568612 GABBR2O75899 941 aa7.33□□□□□ -1.24
VPS35-208ENST00000568612 MAP3K13O43283 966 aa7.31□□□□□ -1.24
VPS35-208ENST00000568612 KIF12Q96FN5 646 aa7.31□□□□□ -1.24
VPS35-208ENST00000568612 GALR2O43603 387 aaPredicted RBP7.3□□□□□ -1.24
VPS35-208ENST00000568612 MS4A3Q96HJ5 214 aa7.3□□□□□ -1.24
VPS35-208ENST00000568612 PCDHB13Q9Y5F0 798 aa7.3□□□□□ -1.24
VPS35-208ENST00000568612 CLCN6P51797 869 aa7.29□□□□□ -1.24
VPS35-208ENST00000568612 ECM2O94769 699 aaPredicted RBP7.27□□□□□ -1.25
VPS35-208ENST00000568612 TRIM41Q8WV44 630 aa7.26□□□□□ -1.25
VPS35-208ENST00000568612 DCBLD2Q96PD2 775 aa7.26□□□□□ -1.25
VPS35-208ENST00000568612 PCDHB8Q9UN66 801 aa7.25□□□□□ -1.25
VPS35-208ENST00000568612 IFNL1Q8IU54 200 aa7.24□□□□□ -1.25
VPS35-208ENST00000568612 CHRM1P11229 460 aaPredicted RBP7.23□□□□□ -1.25
VPS35-208ENST00000568612 PKD2Q13563 968 aa7.23□□□□□ -1.25
VPS35-208ENST00000568612 SGIP1Q9BQI5 828 aa7.23□□□□□ -1.25
VPS35-208ENST00000568612 ZNF467Q7Z7K2 595 aaPredicted RBP7.22□□□□□ -1.25
VPS35-208ENST00000568612 TRPC6Q9Y210 931 aa7.21□□□□□ -1.26
VPS35-208ENST00000568612 AMER1Q5JTC6 1135 aaPredicted RBP7.18□□□□□ -1.26
VPS35-208ENST00000568612 RIOK3O14730 519 aaKnown RBP7.17□□□□□ -1.26
VPS35-208ENST00000568612 RGL2O15211 777 aa7.17□□□□□ -1.26
VPS35-208ENST00000568612 DCAF8L2P0C7V8 631 aa7.17□□□□□ -1.26
VPS35-208ENST00000568612 TMEM106CQ9BVX2 250 aa7.17□□□□□ -1.26
VPS35-208ENST00000568612 BMP2KQ9NSY1 1161 aaPredicted RBP7.17□□□□□ -1.26
VPS35-208ENST00000568612 TIE1P35590 1138 aa7.16□□□□□ -1.26
VPS35-208ENST00000568612 PSEN1P49768 467 aa7.16□□□□□ -1.26
VPS35-208ENST00000568612 RNF25Q96BH1 459 aaPredicted RBP7.16□□□□□ -1.26
VPS35-208ENST00000568612 RTN4Q9NQC3 1192 aaKnown RBP7.16□□□□□ -1.26
VPS35-208ENST00000568612 POTEIP0CG38 1075 aa7.15□□□□□ -1.26
VPS35-208ENST00000568612 PDAP1Q13442 181 aaKnown RBP7.15□□□□□ -1.26
VPS35-208ENST00000568612 TTLL13PA6NNM8 815 aa7.14□□□□□ -1.27
VPS35-208ENST00000568612 ATMINO43313 823 aaPredicted RBP7.14□□□□□ -1.27
VPS35-208ENST00000568612 ATN1P54259 1190 aaPredicted RBP7.14□□□□□ -1.27
VPS35-208ENST00000568612 TAOK2Q9UL54 1235 aa7.14□□□□□ -1.27
VPS35-208ENST00000568612 VGFO15240 615 aaPredicted RBP7.13□□□□□ -1.27
VPS35-208ENST00000568612 GOLGA2Q08379 1002 aa7.13□□□□□ -1.27
VPS35-208ENST00000568612 ASTLQ6HA08 431 aaPredicted RBP7.12□□□□□ -1.27
VPS35-208ENST00000568612 TRIM35Q9UPQ4 493 aa7.12□□□□□ -1.27
VPS35-208ENST00000568612 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.11□□□□□ -1.27
VPS35-208ENST00000568612 ZFP91Q96JP5 570 aaPredicted RBP7.11□□□□□ -1.27
VPS35-208ENST00000568612 PELP1Q8IZL8 1130 aaKnown RBP7.1□□□□□ -1.27
VPS35-208ENST00000568612 STK25O00506 426 aa7.09□□□□□ -1.27
VPS35-208ENST00000568612 CABP2Q9NPB3 220 aa7.09□□□□□ -1.27
VPS35-208ENST00000568612 MKRN3Q13064 507 aaKnown RBP7.08□□□□□ -1.28
VPS35-208ENST00000568612 SLC39A7Q92504 469 aa7.08□□□□□ -1.28
VPS35-208ENST00000568612 STK24Q9Y6E0 443 aa7.08□□□□□ -1.28
VPS35-208ENST00000568612 BCL11BQ9C0K0 894 aaPredicted RBP7.07□□□□□ -1.28
VPS35-208ENST00000568612 METRNQ9UJH8 293 aa7.07□□□□□ -1.28
VPS35-208ENST00000568612 SEC24BO95487 1268 aa7.06□□□□□ -1.28
VPS35-208ENST00000568612 CHGAP10645 457 aaKnown RBP7.06□□□□□ -1.28
VPS35-208ENST00000568612 C7P10643 843 aa7.05□□□□□ -1.28
VPS35-208ENST00000568612 EFCAB3Q8N7B9 438 aa7.03□□□□□ -1.28
VPS35-208ENST00000568612 PLCG2P16885 1265 aa7.02□□□□□ -1.29
VPS35-208ENST00000568612 IER5LQ5T953 404 aa7.02□□□□□ -1.29
VPS35-208ENST00000568612 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.01□□□□□ -1.293e-7■□□□□ 10.8
VPS35-208ENST00000568612 HS6ST3Q8IZP7 471 aa6.99□□□□□ -1.29
VPS35-208ENST00000568612 COLQQ9Y215 455 aaPredicted RBP6.99□□□□□ -1.29
VPS35-208ENST00000568612 OCEL1Q9H607 264 aa6.98□□□□□ -1.29
VPS35-208ENST00000568612 IRX5P78411 483 aaPredicted RBP6.97□□□□□ -1.29
VPS35-208ENST00000568612 POTEFA5A3E0 1075 aa6.96□□□□□ -1.3
VPS35-208ENST00000568612 SOX12O15370 315 aa6.96□□□□□ -1.3
VPS35-208ENST00000568612 LHX8Q68G74 356 aa6.96□□□□□ -1.3
VPS35-208ENST00000568612 PHF8Q9UPP1 1060 aa6.96□□□□□ -1.3
VPS35-208ENST00000568612 G3V3G9 751 aa6.94□□□□□ -1.3
VPS35-208ENST00000568612 NLRP6P59044 892 aa6.94□□□□□ -1.3
VPS35-208ENST00000568612 POTEB2H3BUK9 544 aa6.93□□□□□ -1.3
VPS35-208ENST00000568612 DPY19L2Q6NUT2 758 aa6.93□□□□□ -1.3
VPS35-208ENST00000568612 PDCD7Q8N8D1 485 aaKnown RBP6.93□□□□□ -1.3
VPS35-208ENST00000568612 MFRPQ9BY79 579 aa6.92□□□□□ -1.3
VPS35-208ENST00000568612 L3MBTL3Q96JM7 780 aaPredicted RBP6.9□□□□□ -1.3
VPS35-208ENST00000568612 SCUBE2Q9NQ36 999 aa6.89□□□□□ -1.31
VPS35-208ENST00000568612 NKX1-1Q15270 411 aaPredicted RBP6.88□□□□□ -1.31
VPS35-208ENST00000568612 MAMSTRQ6ZN01 415 aa6.88□□□□□ -1.31
VPS35-208ENST00000568612 C3orf67Q6ZVT6 689 aa6.88□□□□□ -1.31
VPS35-208ENST00000568612 FBXO22Q8NEZ5 403 aa6.88□□□□□ -1.31
VPS35-208ENST00000568612 MS4A4AQ96JQ5 239 aa6.88□□□□□ -1.31
VPS35-208ENST00000568612 BOLA1Q9Y3E2 137 aa6.88□□□□□ -1.31
VPS35-208ENST00000568612 POTEJP0CG39 1038 aa6.87□□□□□ -1.31
VPS35-208ENST00000568612 ILDR1Q86SU0 546 aaPredicted RBP6.87□□□□□ -1.31
VPS35-208ENST00000568612 BBXQ8WY36 941 aaPredicted RBP6.87□□□□□ -1.31
VPS35-208ENST00000568612 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.87□□□□□ -1.31
VPS35-208ENST00000568612 RYDENQ9NUL5 291 aaKnown RBP6.86□□□□□ -1.31
VPS35-208ENST00000568612 DNAJC5Q9H3Z4 198 aa6.85□□□□□ -1.31
VPS35-208ENST00000568612 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.85□□□□□ -1.31
VPS35-208ENST00000568612 OTUD5Q96G74 571 aa6.84□□□□□ -1.31
VPS35-208ENST00000568612 CFAP44Q96MT7 982 aa6.84□□□□□ -1.31
VPS35-208ENST00000568612 PPP1R37O75864 691 aa6.83□□□□□ -1.32
VPS35-208ENST00000568612 MICALL2Q8IY33 904 aa6.83□□□□□ -1.32
VPS35-208ENST00000568612 PAXIP1Q6ZW49 1069 aaPredicted RBP6.82□□□□□ -1.32
VPS35-208ENST00000568612 SLAIN1Q8ND83 568 aa6.82□□□□□ -1.32
VPS35-208ENST00000568612 GTPBP6O43824 516 aaPredicted RBP6.81□□□□□ -1.32
VPS35-208ENST00000568612 SPRYD3Q8NCJ5 442 aa6.81□□□□□ -1.32
VPS35-208ENST00000568612 TMEM121BQ9BXQ6 578 aaPredicted RBP6.79□□□□□ -1.32
VPS35-208ENST00000568612 TMC2Q8TDI7 906 aa6.74□□□□□ -1.33
VPS35-208ENST00000568612 TMEM92Q6UXU6 159 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms