RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 FAM212AQ96EL1 285 aa11.83□□□□□ -0.52
VPS39-209ENST00000568029 FXR2P51116 673 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS39-209ENST00000568029 PIP4P2Q8N4L2 257 aa11.81□□□□□ -0.52
VPS39-209ENST00000568029 RGL2O15211 777 aa11.8□□□□□ -0.52
VPS39-209ENST00000568029 DCAF8L2P0C7V8 631 aa11.8□□□□□ -0.52
VPS39-209ENST00000568029 CC2D2AQ9P2K1 1620 aa11.78□□□□□ -0.52
VPS39-209ENST00000568029 CHRM1P11229 460 aaPredicted RBP11.77□□□□□ -0.53
VPS39-209ENST00000568029 DCAF8Q5TAQ9 597 aa11.77□□□□□ -0.53
VPS39-209ENST00000568029 RASEFQ8IZ41 740 aa11.76□□□□□ -0.53
VPS39-209ENST00000568029 SP7Q8TDD2 431 aaPredicted RBP11.76□□□□□ -0.53
VPS39-209ENST00000568029 FARP1Q9Y4F1 1045 aaPredicted RBP11.76□□□□□ -0.53
VPS39-209ENST00000568029 CECR2Q9BXF3 1484 aa11.76□□□□□ -0.53
VPS39-209ENST00000568029 PRKAR2AP13861 404 aaKnown RBP11.73□□□□□ -0.53
VPS39-209ENST00000568029 CHADLQ6NUI6 762 aa11.73□□□□□ -0.53
VPS39-209ENST00000568029 PLCB2Q00722 1185 aa11.72□□□□□ -0.53
VPS39-209ENST00000568029 BBXQ8WY36 941 aaPredicted RBP11.7□□□□□ -0.54
VPS39-209ENST00000568029 TAOK2Q9UL54 1235 aa11.7□□□□□ -0.54
VPS39-209ENST00000568029 HAX1O00165 279 aa11.67□□□□□ -0.54
VPS39-209ENST00000568029 RNF25Q96BH1 459 aaPredicted RBP11.67□□□□□ -0.54
VPS39-209ENST00000568029 RIOK3O14730 519 aaKnown RBP11.66□□□□□ -0.54
VPS39-209ENST00000568029 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.64□□□□□ -0.55
VPS39-209ENST00000568029 HS6ST3Q8IZP7 471 aa11.63□□□□□ -0.55
VPS39-209ENST00000568029 EIF4G1Q04637 1599 aaKnown RBP11.62□□□□□ -0.55
VPS39-209ENST00000568029 SGIP1Q9BQI5 828 aa11.61□□□□□ -0.55
VPS39-209ENST00000568029 CHGAP10645 457 aaKnown RBP11.6□□□□□ -0.55
VPS39-209ENST00000568029 VGFO15240 615 aaPredicted RBP11.59□□□□□ -0.55
VPS39-209ENST00000568029 PYGBP11216 843 aa11.57□□□□□ -0.56
VPS39-209ENST00000568029 TSPYL2Q9H2G4 693 aaPredicted RBP11.57□□□□□ -0.56
VPS39-209ENST00000568029 PAK3O75914 559 aaPredicted RBP11.56□□□□□ -0.56
VPS39-209ENST00000568029 CCDC61Q9Y6R9 512 aa11.56□□□□□ -0.56
VPS39-209ENST00000568029 ZNF467Q7Z7K2 595 aaPredicted RBP11.53□□□□□ -0.56
VPS39-209ENST00000568029 MYO15BQ96JP2 1530 aa11.52□□□□□ -0.57
VPS39-209ENST00000568029 SCRIBQ14160 1630 aa11.5□□□□□ -0.57
VPS39-209ENST00000568029 SPRYD3Q8NCJ5 442 aa11.5□□□□□ -0.57
VPS39-209ENST00000568029 SHROOM4Q9ULL8 1493 aa11.5□□□□□ -0.57
VPS39-209ENST00000568029 PAXIP1Q6ZW49 1069 aaPredicted RBP11.47□□□□□ -0.57
VPS39-209ENST00000568029 ZNF579Q8NAF0 562 aaKnown RBP11.47□□□□□ -0.57
VPS39-209ENST00000568029 STK25O00506 426 aa11.46□□□□□ -0.57
VPS39-209ENST00000568029 HAP1P54257 671 aaPredicted RBP11.46□□□□□ -0.57
VPS39-209ENST00000568029 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.45□□□□□ -0.58
VPS39-209ENST00000568029 EVX2Q03828 476 aa11.45□□□□□ -0.58
VPS39-209ENST00000568029 ZFP91Q96JP5 570 aaPredicted RBP11.45□□□□□ -0.58
VPS39-209ENST00000568029 CD44P16070 742 aaKnown RBP11.43□□□□□ -0.58
VPS39-209ENST00000568029 PDAP1Q13442 181 aaKnown RBP11.43□□□□□ -0.58
VPS39-209ENST00000568029 KIF12Q96FN5 646 aa11.42□□□□□ -0.58
VPS39-209ENST00000568029 CFAP44Q96MT7 982 aa11.42□□□□□ -0.58
VPS39-209ENST00000568029 VSIG10Q8N0Z9 540 aa11.41□□□□□ -0.58
VPS39-209ENST00000568029 BCL11BQ9C0K0 894 aaPredicted RBP11.41□□□□□ -0.58
VPS39-209ENST00000568029 C19orf67A6NJJ6 358 aa11.39□□□□□ -0.59
VPS39-209ENST00000568029 NKX1-1Q15270 411 aaPredicted RBP11.39□□□□□ -0.59
VPS39-209ENST00000568029 RYDENQ9NUL5 291 aaKnown RBP11.39□□□□□ -0.59
VPS39-209ENST00000568029 ZRANB1Q9UGI0 708 aa11.39□□□□□ -0.59
VPS39-209ENST00000568029 PCDHB13Q9Y5F0 798 aa11.39□□□□□ -0.59
VPS39-209ENST00000568029 STK24Q9Y6E0 443 aa11.39□□□□□ -0.59
VPS39-209ENST00000568029 PCDHB8Q9UN66 801 aa11.37□□□□□ -0.59
VPS39-209ENST00000568029 MAP3K13O43283 966 aa11.36□□□□□ -0.59
VPS39-209ENST00000568029 GTPBP6O43824 516 aaPredicted RBP11.34□□□□□ -0.59
VPS39-209ENST00000568029 PSEN1P49768 467 aa11.34□□□□□ -0.59
VPS39-209ENST00000568029 IFNL1Q8IU54 200 aa11.34□□□□□ -0.59
VPS39-209ENST00000568029 CUX2O14529 1486 aa11.33□□□□□ -0.6
VPS39-209ENST00000568029 ZCCHC6Q5VYS8 1495 aaKnown RBP11.31□□□□□ -0.6
VPS39-209ENST00000568029 PHF12Q96QT6 1004 aa11.29□□□□□ -0.6
VPS39-209ENST00000568029 TSHZ2Q9NRE2 1034 aa11.27□□□□□ -0.61
VPS39-209ENST00000568029 CLCN6P51797 869 aa11.26□□□□□ -0.61
VPS39-209ENST00000568029 KDM2AQ9Y2K7 1162 aa11.23□□□□□ -0.61
VPS39-209ENST00000568029 DCAF1Q9Y4B6 1507 aa11.23□□□□□ -0.61
VPS39-209ENST00000568029 GABBR2O75899 941 aa11.22□□□□□ -0.61
VPS39-209ENST00000568029 ERCC6Q03468 1493 aa11.22□□□□□ -0.61
VPS39-209ENST00000568029 SOX12O15370 315 aa11.2□□□□□ -0.62
VPS39-209ENST00000568029 MS4A3Q96HJ5 214 aa11.2□□□□□ -0.62
VPS39-209ENST00000568029 MFRPQ9BY79 579 aa11.18□□□□□ -0.62
VPS39-209ENST00000568029 TIE1P35590 1138 aa11.16□□□□□ -0.62
VPS39-209ENST00000568029 CABP2Q9NPB3 220 aa11.16□□□□□ -0.62
VPS39-209ENST00000568029 NLRP6P59044 892 aa11.15□□□□□ -0.62
VPS39-209ENST00000568029 EFCAB3Q8N7B9 438 aa11.15□□□□□ -0.62
VPS39-209ENST00000568029 TMEM106CQ9BVX2 250 aa11.14□□□□□ -0.63
VPS39-209ENST00000568029 NESP48681 1621 aa11.13□□□□□ -0.63
VPS39-209ENST00000568029 FBXO22Q8NEZ5 403 aa11.13□□□□□ -0.63
VPS39-209ENST00000568029 THOC2Q8NI27 1593 aaKnown RBP11.12□□□□□ -0.63
VPS39-209ENST00000568029 BCANQ96GW7 911 aa11.1□□□□□ -0.63
VPS39-209ENST00000568029 TRPC6Q9Y210 931 aa11.1□□□□□ -0.63
VPS39-209ENST00000568029 GOLGA2Q08379 1002 aa11.08□□□□□ -0.64
VPS39-209ENST00000568029 TTLL13PA6NNM8 815 aa11.07□□□□□ -0.64
VPS39-209ENST00000568029 GALR2O43603 387 aaPredicted RBP11.07□□□□□ -0.64
VPS39-209ENST00000568029 PHF8Q9UPP1 1060 aa11.07□□□□□ -0.64
VPS39-209ENST00000568029 MKRN3Q13064 507 aaKnown RBP11.05□□□□□ -0.64
VPS39-209ENST00000568029 BMP2KQ9NSY1 1161 aaPredicted RBP11.05□□□□□ -0.64
VPS39-209ENST00000568029 ILDR1Q86SU0 546 aaPredicted RBP11.04□□□□□ -0.64
VPS39-209ENST00000568029 LHX8Q68G74 356 aa11.03□□□□□ -0.64
VPS39-209ENST00000568029 SMARCA2P51531 1590 aa11.02□□□□□ -0.65
VPS39-209ENST00000568029 MS4A4AQ96JQ5 239 aa11.01□□□□□ -0.65
VPS39-209ENST00000568029 PPP1R37O75864 691 aa11□□□□□ -0.65
VPS39-209ENST00000568029 KIF21AQ7Z4S6 1674 aa11□□□□□ -0.65
VPS39-209ENST00000568029 TRIM35Q9UPQ4 493 aa10.99□□□□□ -0.65
VPS39-209ENST00000568029 ASTLQ6HA08 431 aaPredicted RBP10.98□□□□□ -0.65
VPS39-209ENST00000568029 NCAPD3P42695 1498 aa10.98□□□□□ -0.65
VPS39-209ENST00000568029 CADPS2Q86UW7 1296 aa10.97□□□□□ -0.65
VPS39-209ENST00000568029 IER5LQ5T953 404 aa10.96□□□□□ -0.65
VPS39-209ENST00000568029 ATMINO43313 823 aaPredicted RBP10.95□□□□□ -0.66
VPS39-209ENST00000568029 POTEIP0CG38 1075 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms