RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 METRNQ9UJH8 293 aa14.75□□□□□ -0.05
CHD9-215ENST00000565442 CCDC61Q9Y6R9 512 aa14.74□□□□□ -0.05
CHD9-215ENST00000565442 SLC39A7Q92504 469 aa14.73□□□□□ -0.05
CHD9-215ENST00000565442 C7P10643 843 aa14.71□□□□□ -0.05
CHD9-215ENST00000565442 PLSCR2Q9NRY7 297 aa14.69□□□□□ -0.06
CHD9-215ENST00000565442 PLEKHG5O94827 1062 aa14.67□□□□□ -0.06
CHD9-215ENST00000565442 KIF12Q96FN5 646 aa14.66□□□□□ -0.06
CHD9-215ENST00000565442 MIER1Q8N108 512 aa14.64□□□□□ -0.07
CHD9-215ENST00000565442 ATN1P54259 1190 aaPredicted RBP14.63□□□□□ -0.07
CHD9-215ENST00000565442 POTEJP0CG39 1038 aa14.62□□□□□ -0.07
CHD9-215ENST00000565442 POTEMA6NI47 508 aa14.59□□□□□ -0.07
CHD9-215ENST00000565442 RASEFQ8IZ41 740 aa14.59□□□□□ -0.07
CHD9-215ENST00000565442 MAMSTRQ6ZN01 415 aa14.58□□□□□ -0.08
CHD9-215ENST00000565442 MAP3K13O43283 966 aa14.56□□□□□ -0.08
CHD9-215ENST00000565442 BMP2KQ9NSY1 1161 aaPredicted RBP14.56□□□□□ -0.08
CHD9-215ENST00000565442 TRPC6Q9Y210 931 aa14.56□□□□□ -0.08
CHD9-215ENST00000565442 POTEGQ6S5H5 508 aa14.53□□□□□ -0.08
CHD9-215ENST00000565442 TIE1P35590 1138 aa14.52□□□□□ -0.09
CHD9-215ENST00000565442 PLCD3Q8N3E9 789 aa14.5□□□□□ -0.09
CHD9-215ENST00000565442 SCUBE2Q9NQ36 999 aa14.5□□□□□ -0.09
CHD9-215ENST00000565442 POTEFA5A3E0 1075 aa14.48□□□□□ -0.09
CHD9-215ENST00000565442 TTLL13PA6NNM8 815 aa14.43□□□□□ -0.1
CHD9-215ENST00000565442 ZBTB47Q9UFB7 747 aaPredicted RBP14.43□□□□□ -0.1
CHD9-215ENST00000565442 SGIP1Q9BQI5 828 aa14.4□□□□□ -0.1
CHD9-215ENST00000565442 NUBP1P53384 320 aa14.39□□□□□ -0.11
CHD9-215ENST00000565442 PCDHB13Q9Y5F0 798 aa14.39□□□□□ -0.11
CHD9-215ENST00000565442 SEC24BO95487 1268 aa14.37□□□□□ -0.11
CHD9-215ENST00000565442 LCE2DQ5TA82 110 aaPredicted RBP14.37□□□□□ -0.11
CHD9-215ENST00000565442 COLQQ9Y215 455 aaPredicted RBP14.37□□□□□ -0.11
CHD9-215ENST00000565442 PCDH10Q9P2E7 1040 aa14.36□□□□□ -0.11
CHD9-215ENST00000565442 FAM163AQ96GL9 167 aaPredicted RBP14.35□□□□□ -0.11
CHD9-215ENST00000565442 TRIM35Q9UPQ4 493 aa14.35□□□□□ -0.11
CHD9-215ENST00000565442 IER5LQ5T953 404 aa14.32□□□□□ -0.12
CHD9-215ENST00000565442 FAM212AQ96EL1 285 aa14.31□□□□□ -0.12
CHD9-215ENST00000565442 FKBP8Q14318 412 aa14.29□□□□□ -0.12
CHD9-215ENST00000565442 IFNL1Q8IU54 200 aa14.29□□□□□ -0.12
CHD9-215ENST00000565442 TMEM106CQ9BVX2 250 aa14.23□□□□□ -0.13
CHD9-215ENST00000565442 PLCG2P16885 1265 aa14.15□□□□□ -0.14
CHD9-215ENST00000565442 DCAF8Q5TAQ9 597 aa14.13□□□□□ -0.15
CHD9-215ENST00000565442 SLAIN1Q8ND83 568 aa14.12□□□□□ -0.15
CHD9-215ENST00000565442 PYGBP11216 843 aa14.11□□□□□ -0.15
CHD9-215ENST00000565442 IRX5P78411 483 aaPredicted RBP14.11□□□□□ -0.15
CHD9-215ENST00000565442 FBXO3Q9UK99 471 aa14.09□□□□□ -0.15
CHD9-215ENST00000565442 OCEL1Q9H607 264 aa14.04□□□□□ -0.16
CHD9-215ENST00000565442 CDAN1Q8IWY9 1227 aa14.03□□□□□ -0.16
CHD9-215ENST00000565442 PCDHB8Q9UN66 801 aa14.03□□□□□ -0.16
CHD9-215ENST00000565442 ST18O60284 1047 aa14.02□□□□□ -0.17
CHD9-215ENST00000565442 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
CHD9-215ENST00000565442 GSE1Q14687 1217 aa13.93□□□□□ -0.18
CHD9-215ENST00000565442 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.93□□□□□ -0.18
CHD9-215ENST00000565442 VASPP50552 380 aaPredicted RBP13.92□□□□□ -0.18
CHD9-215ENST00000565442 ZNF467Q7Z7K2 595 aaPredicted RBP13.92□□□□□ -0.18
CHD9-215ENST00000565442 SNPHO15079 494 aa13.88□□□□□ -0.19
CHD9-215ENST00000565442 TMEM121BQ9BXQ6 578 aaPredicted RBP13.88□□□□□ -0.19
CHD9-215ENST00000565442 GOLGA2Q08379 1002 aa13.86□□□□□ -0.19
CHD9-215ENST00000565442 PDCD7Q8N8D1 485 aaKnown RBP13.86□□□□□ -0.19
CHD9-215ENST00000565442 CHRM1P11229 460 aaPredicted RBP13.84□□□□□ -0.19
CHD9-215ENST00000565442 MKRN3Q13064 507 aaKnown RBP13.84□□□□□ -0.19
CHD9-215ENST00000565442 C3orf67Q6ZVT6 689 aa13.81□□□□□ -0.2
CHD9-215ENST00000565442 PSEN1P49768 467 aa13.79□□□□□ -0.2
CHD9-215ENST00000565442 L3MBTL3Q96JM7 780 aaPredicted RBP13.79□□□□□ -0.2
CHD9-215ENST00000565442 MARVELD3Q96A59 401 aa13.77□□□□□ -0.21
CHD9-215ENST00000565442 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.76□□□□□ -0.212e-7■■■■■ 30.7
CHD9-215ENST00000565442 PDAP1Q13442 181 aaKnown RBP13.71□□□□□ -0.21
CHD9-215ENST00000565442 ILDR1Q86SU0 546 aaPredicted RBP13.69□□□□□ -0.22
CHD9-215ENST00000565442 SPNS2Q8IVW8 549 aa13.69□□□□□ -0.22
CHD9-215ENST00000565442 MMRN1Q13201 1228 aa13.68□□□□□ -0.22
CHD9-215ENST00000565442 SPOCK2Q92563 424 aa13.67□□□□□ -0.22
CHD9-215ENST00000565442 EMP3P54852 163 aa13.66□□□□□ -0.22
CHD9-215ENST00000565442 CIZ1Q9ULV3 898 aaPredicted RBP13.65□□□□□ -0.22
CHD9-215ENST00000565442 IFNLR1Q8IU57 520 aaPredicted RBP13.64□□□□□ -0.23
CHD9-215ENST00000565442 CABP2Q9NPB3 220 aa13.63□□□□□ -0.23
CHD9-215ENST00000565442 DPY19L2Q6NUT2 758 aa13.62□□□□□ -0.23
CHD9-215ENST00000565442 G3V3G9 751 aa13.57□□□□□ -0.24
CHD9-215ENST00000565442 HS3ST6Q96QI5 342 aa13.57□□□□□ -0.24
CHD9-215ENST00000565442 BOLA1Q9Y3E2 137 aa13.57□□□□□ -0.24
CHD9-215ENST00000565442 POTEB3A0JP26 581 aa13.55□□□□□ -0.24
CHD9-215ENST00000565442 FAM205CA6NFA0 338 aa13.55□□□□□ -0.24
CHD9-215ENST00000565442 POTEBQ6S5H4 581 aa13.55□□□□□ -0.24
CHD9-215ENST00000565442 KRTAP3-3Q9BYR6 98 aa13.52□□□□□ -0.25
CHD9-215ENST00000565442 KRTAP3-2Q9BYR7 98 aa13.52□□□□□ -0.25
CHD9-215ENST00000565442 HOXB3P14651 431 aaPredicted RBP13.49□□□□□ -0.25
CHD9-215ENST00000565442 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
CHD9-215ENST00000565442 ZNF710Q8N1W2 664 aa13.43□□□□□ -0.26
CHD9-215ENST00000565442 EFCAB3Q8N7B9 438 aa13.43□□□□□ -0.26
CHD9-215ENST00000565442 DOK7Q18PE1 504 aa13.42□□□□□ -0.26
CHD9-215ENST00000565442 HOXB1P14653 301 aaPredicted RBP13.41□□□□□ -0.26
CHD9-215ENST00000565442 ERBB3P21860 1342 aa13.35□□□□□ -0.27
CHD9-215ENST00000565442 RIMBP2O15034 1052 aa13.33□□□□□ -0.28
CHD9-215ENST00000565442 MICALL2Q8IY33 904 aa13.33□□□□□ -0.28
CHD9-215ENST00000565442 RIOK3O14730 519 aaKnown RBP13.29□□□□□ -0.28
CHD9-215ENST00000565442 SOX12O15370 315 aa13.29□□□□□ -0.28
CHD9-215ENST00000565442 TMEM92Q6UXU6 159 aa13.29□□□□□ -0.28
CHD9-215ENST00000565442 RNF25Q96BH1 459 aaPredicted RBP13.28□□□□□ -0.28
CHD9-215ENST00000565442 VARS2Q5ST30 1063 aaKnown RBP13.26□□□□□ -0.29
CHD9-215ENST00000565442 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.25□□□□□ -0.29
CHD9-215ENST00000565442 ZFP91Q96JP5 570 aaPredicted RBP13.25□□□□□ -0.29
CHD9-215ENST00000565442 MS4A4AQ96JQ5 239 aa13.25□□□□□ -0.29
CHD9-215ENST00000565442 ZSWIM6Q9HCJ5 1215 aa13.25□□□□□ -0.29
CHD9-215ENST00000565442 VGFO15240 615 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms