RNA–Protein interactions for RNA: ENST00000563645.1

GDE1-202, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 2

Gene GDE1, Length 769 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-202ENST00000563645 CCDC61Q9Y6R9 512 aa11.45□□□□□ -0.58
GDE1-202ENST00000563645 PHF12Q96QT6 1004 aa11.44□□□□□ -0.58
GDE1-202ENST00000563645 CLCN6P51797 869 aa11.42□□□□□ -0.58
GDE1-202ENST00000563645 GABBR2O75899 941 aa11.41□□□□□ -0.58
GDE1-202ENST00000563645 DCAF8Q5TAQ9 597 aa11.39□□□□□ -0.59
GDE1-202ENST00000563645 GSE1Q14687 1217 aa11.38□□□□□ -0.59
GDE1-202ENST00000563645 KIF12Q96FN5 646 aa11.34□□□□□ -0.59
GDE1-202ENST00000563645 GALR2O43603 387 aaPredicted RBP11.32□□□□□ -0.6
GDE1-202ENST00000563645 CIZ1Q9ULV3 898 aaPredicted RBP11.32□□□□□ -0.6
GDE1-202ENST00000563645 MS4A3Q96HJ5 214 aa11.3□□□□□ -0.6
GDE1-202ENST00000563645 MAP3K13O43283 966 aa11.29□□□□□ -0.6
GDE1-202ENST00000563645 PYGBP11216 843 aa11.28□□□□□ -0.6
GDE1-202ENST00000563645 SGIP1Q9BQI5 828 aa11.26□□□□□ -0.61
GDE1-202ENST00000563645 PCDHB13Q9Y5F0 798 aa11.25□□□□□ -0.61
GDE1-202ENST00000563645 CHRM1P11229 460 aaPredicted RBP11.23□□□□□ -0.61
GDE1-202ENST00000563645 TRIM41Q8WV44 630 aa11.23□□□□□ -0.61
GDE1-202ENST00000563645 DCBLD2Q96PD2 775 aa11.21□□□□□ -0.61
GDE1-202ENST00000563645 IFNL1Q8IU54 200 aa11.2□□□□□ -0.62
GDE1-202ENST00000563645 POTEIP0CG38 1075 aa11.17□□□□□ -0.62
GDE1-202ENST00000563645 ZNF467Q7Z7K2 595 aaPredicted RBP11.16□□□□□ -0.62
GDE1-202ENST00000563645 TRPC6Q9Y210 931 aa11.16□□□□□ -0.62
GDE1-202ENST00000563645 TIE1P35590 1138 aa11.14□□□□□ -0.63
GDE1-202ENST00000563645 PCDHB8Q9UN66 801 aa11.14□□□□□ -0.63
GDE1-202ENST00000563645 PKD2Q13563 968 aa11.12□□□□□ -0.63
GDE1-202ENST00000563645 ASTLQ6HA08 431 aaPredicted RBP11.12□□□□□ -0.63
GDE1-202ENST00000563645 BMP2KQ9NSY1 1161 aaPredicted RBP11.12□□□□□ -0.63
GDE1-202ENST00000563645 ATMINO43313 823 aaPredicted RBP11.11□□□□□ -0.63
GDE1-202ENST00000563645 ECM2O94769 699 aaPredicted RBP11.09□□□□□ -0.63
GDE1-202ENST00000563645 TTLL13PA6NNM8 815 aa11.08□□□□□ -0.64
GDE1-202ENST00000563645 ATN1P54259 1190 aaPredicted RBP11.06□□□□□ -0.64
GDE1-202ENST00000563645 RNF25Q96BH1 459 aaPredicted RBP11.06□□□□□ -0.64
GDE1-202ENST00000563645 TMEM106CQ9BVX2 250 aa11.06□□□□□ -0.64
GDE1-202ENST00000563645 RIOK3O14730 519 aaKnown RBP11.04□□□□□ -0.64
GDE1-202ENST00000563645 PDAP1Q13442 181 aaKnown RBP11.04□□□□□ -0.64
GDE1-202ENST00000563645 PELP1Q8IZL8 1130 aaKnown RBP11.04□□□□□ -0.64
GDE1-202ENST00000563645 PSEN1P49768 467 aa11.03□□□□□ -0.64
GDE1-202ENST00000563645 SLC39A7Q92504 469 aa11□□□□□ -0.65
GDE1-202ENST00000563645 TRIM35Q9UPQ4 493 aa11□□□□□ -0.65
GDE1-202ENST00000563645 RGL2O15211 777 aa10.99□□□□□ -0.65
GDE1-202ENST00000563645 VGFO15240 615 aaPredicted RBP10.98□□□□□ -0.65
GDE1-202ENST00000563645 METRNQ9UJH8 293 aa10.97□□□□□ -0.65
GDE1-202ENST00000563645 C7P10643 843 aa10.96□□□□□ -0.65
GDE1-202ENST00000563645 TAOK2Q9UL54 1235 aa10.96□□□□□ -0.65
GDE1-202ENST00000563645 IER5LQ5T953 404 aa10.94□□□□□ -0.66
GDE1-202ENST00000563645 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.93□□□□□ -0.66
GDE1-202ENST00000563645 AMER1Q5JTC6 1135 aaPredicted RBP10.93□□□□□ -0.66
GDE1-202ENST00000563645 ZFP91Q96JP5 570 aaPredicted RBP10.93□□□□□ -0.66
GDE1-202ENST00000563645 GOLGA2Q08379 1002 aa10.91□□□□□ -0.66
GDE1-202ENST00000563645 CABP2Q9NPB3 220 aa10.89□□□□□ -0.67
GDE1-202ENST00000563645 MKRN3Q13064 507 aaKnown RBP10.87□□□□□ -0.67
GDE1-202ENST00000563645 POTEFA5A3E0 1075 aa10.86□□□□□ -0.67
GDE1-202ENST00000563645 SEC24BO95487 1268 aa10.86□□□□□ -0.67
GDE1-202ENST00000563645 RTN4Q9NQC3 1192 aaKnown RBP10.86□□□□□ -0.67
GDE1-202ENST00000563645 IRX5P78411 483 aaPredicted RBP10.85□□□□□ -0.67
GDE1-202ENST00000563645 LHX8Q68G74 356 aa10.85□□□□□ -0.67
GDE1-202ENST00000563645 BCL11BQ9C0K0 894 aaPredicted RBP10.85□□□□□ -0.67
GDE1-202ENST00000563645 COLQQ9Y215 455 aaPredicted RBP10.85□□□□□ -0.67
GDE1-202ENST00000563645 STK25O00506 426 aa10.84□□□□□ -0.67
GDE1-202ENST00000563645 PLCG2P16885 1265 aa10.83□□□□□ -0.68
GDE1-202ENST00000563645 STK24Q9Y6E0 443 aa10.83□□□□□ -0.68
GDE1-202ENST00000563645 EFCAB3Q8N7B9 438 aa10.81□□□□□ -0.68
GDE1-202ENST00000563645 OCEL1Q9H607 264 aa10.81□□□□□ -0.68
GDE1-202ENST00000563645 POTEB2H3BUK9 544 aa10.8□□□□□ -0.68
GDE1-202ENST00000563645 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.79□□□□□ -0.68
GDE1-202ENST00000563645 HS6ST3Q8IZP7 471 aa10.78□□□□□ -0.68
GDE1-202ENST00000563645 ILDR1Q86SU0 546 aaPredicted RBP10.77□□□□□ -0.69
GDE1-202ENST00000563645 PDCD7Q8N8D1 485 aaKnown RBP10.77□□□□□ -0.69
GDE1-202ENST00000563645 SOX12O15370 315 aa10.75□□□□□ -0.69
GDE1-202ENST00000563645 DCAF8L2P0C7V8 631 aa10.74□□□□□ -0.69
GDE1-202ENST00000563645 CHGAP10645 457 aaKnown RBP10.74□□□□□ -0.69
GDE1-202ENST00000563645 POTEJP0CG39 1038 aa10.73□□□□□ -0.69
GDE1-202ENST00000563645 PHF8Q9UPP1 1060 aa10.71□□□□□ -0.69
GDE1-202ENST00000563645 MAMSTRQ6ZN01 415 aa10.7□□□□□ -0.7
GDE1-202ENST00000563645 NLRP6P59044 892 aa10.68□□□□□ -0.7
GDE1-202ENST00000563645 MFRPQ9BY79 579 aa10.68□□□□□ -0.7
GDE1-202ENST00000563645 DPY19L2Q6NUT2 758 aa10.67□□□□□ -0.7
GDE1-202ENST00000563645 FBXO22Q8NEZ5 403 aa10.67□□□□□ -0.7
GDE1-202ENST00000563645 OTUD5Q96G74 571 aa10.67□□□□□ -0.7
GDE1-202ENST00000563645 L3MBTL3Q96JM7 780 aaPredicted RBP10.67□□□□□ -0.7
GDE1-202ENST00000563645 MS4A4AQ96JQ5 239 aa10.67□□□□□ -0.7
GDE1-202ENST00000563645 DNAJC5Q9H3Z4 198 aa10.67□□□□□ -0.7
GDE1-202ENST00000563645 SCUBE2Q9NQ36 999 aa10.67□□□□□ -0.7
GDE1-202ENST00000563645 BOLA1Q9Y3E2 137 aa10.62□□□□□ -0.71
GDE1-202ENST00000563645 G3V3G9 751 aa10.61□□□□□ -0.71
GDE1-202ENST00000563645 NKX1-1Q15270 411 aaPredicted RBP10.61□□□□□ -0.71
GDE1-202ENST00000563645 C3orf67Q6ZVT6 689 aa10.59□□□□□ -0.71
GDE1-202ENST00000563645 TMEM121BQ9BXQ6 578 aaPredicted RBP10.57□□□□□ -0.72
GDE1-202ENST00000563645 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.57□□□□□ -0.72
GDE1-202ENST00000563645 MICALL2Q8IY33 904 aa10.56□□□□□ -0.72
GDE1-202ENST00000563645 RYDENQ9NUL5 291 aaKnown RBP10.55□□□□□ -0.72
GDE1-202ENST00000563645 SLAIN1Q8ND83 568 aa10.53□□□□□ -0.72
GDE1-202ENST00000563645 BBXQ8WY36 941 aaPredicted RBP10.51□□□□□ -0.73
GDE1-202ENST00000563645 PPP1R37O75864 691 aa10.5□□□□□ -0.73
GDE1-202ENST00000563645 GTPBP6O43824 516 aaPredicted RBP10.48□□□□□ -0.73
GDE1-202ENST00000563645 TMEM92Q6UXU6 159 aa10.43□□□□□ -0.74
GDE1-202ENST00000563645 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.43□□□□□ -0.74
GDE1-202ENST00000563645 SNPHO15079 494 aa10.38□□□□□ -0.75
GDE1-202ENST00000563645 SPRYD3Q8NCJ5 442 aa10.36□□□□□ -0.75
GDE1-202ENST00000563645 KIF3CO14782 793 aa10.35□□□□□ -0.75
GDE1-202ENST00000563645 C2orf72A6NCS6 295 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms