RNA–Protein interactions for RNA: ENST00000563235.5

SMG1-207, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,910 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-207ENST00000563235 C1orf115Q9H7X2 142 aa7.37□□□□□ -1.23
SMG1-207ENST00000563235 U3KPZ7 1027 aaPredicted RBP7.36□□□□□ -1.23
SMG1-207ENST00000563235 BRPF1P55201 1214 aaPredicted RBP7.35□□□□□ -1.23
SMG1-207ENST00000563235 ZBTB7CA1YPR0 619 aa7.33□□□□□ -1.24
SMG1-207ENST00000563235 HMGB1P09429 215 aaKnown RBP7.33□□□□□ -1.24
SMG1-207ENST00000563235 TAF7LQ5H9L4 462 aa7.33□□□□□ -1.24
SMG1-207ENST00000563235 PUS7Q96PZ0 661 aaKnown RBP7.33□□□□□ -1.24
SMG1-207ENST00000563235 ZNF428Q96B54 188 aa7.31□□□□□ -1.24
SMG1-207ENST00000563235 DSG3P32926 999 aa7.29□□□□□ -1.24
SMG1-207ENST00000563235 SPRYD3Q8NCJ5 442 aa7.28□□□□□ -1.24
SMG1-207ENST00000563235 POLR3GLQ9BT43 218 aa7.26□□□□□ -1.25
SMG1-207ENST00000563235 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.26□□□□□ -1.25
SMG1-207ENST00000563235 BCL11BQ9C0K0 894 aaPredicted RBP7.26□□□□□ -1.25
SMG1-207ENST00000563235 CAPN15O75808 1086 aa7.25□□□□□ -1.25
SMG1-207ENST00000563235 IFNLR1Q8IU57 520 aaPredicted RBP7.25□□□□□ -1.25
SMG1-207ENST00000563235 ZMYND15Q9H091 742 aa7.24□□□□□ -1.25
SMG1-207ENST00000563235 ARID3CA6NKF2 412 aa7.23□□□□□ -1.25
SMG1-207ENST00000563235 NEFLP07196 543 aa7.23□□□□□ -1.25
SMG1-207ENST00000563235 SPINK5Q9NQ38 1064 aaPredicted RBP7.23□□□□□ -1.25
SMG1-207ENST00000563235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.22□□□□□ -1.25
SMG1-207ENST00000563235 HNRNPUL2Q1KMD3 747 aaKnown RBP7.22□□□□□ -1.25
SMG1-207ENST00000563235 RSPH6AQ9H0K4 717 aa7.22□□□□□ -1.25
SMG1-207ENST00000563235 KCTD17Q8N5Z5 321 aa7.21□□□□□ -1.26
SMG1-207ENST00000563235 RAD21O60216 631 aa7.21□□□□□ -1.26
SMG1-207ENST00000563235 RGS22Q8NE09 1264 aa7.2□□□□□ -1.26
SMG1-207ENST00000563235 SLC4A2P04920 1241 aa7.2□□□□□ -1.26
SMG1-207ENST00000563235 MTMR7Q9Y216 660 aa7.19□□□□□ -1.26
SMG1-207ENST00000563235 ZNF219Q9P2Y4 722 aaPredicted RBP7.18□□□□□ -1.26
SMG1-207ENST00000563235 FOXD4L5Q5VV16 416 aaPredicted RBP7.18□□□□□ -1.26
SMG1-207ENST00000563235 FOXD4L4Q8WXT5 416 aaPredicted RBP7.18□□□□□ -1.26
SMG1-207ENST00000563235 PKNOX2Q96KN3 472 aa7.17□□□□□ -1.26
SMG1-207ENST00000563235 IRX6P78412 446 aaPredicted RBP7.17□□□□□ -1.26
SMG1-207ENST00000563235 RBM25P49756 843 aaKnown RBP7.16□□□□□ -1.26
SMG1-207ENST00000563235 VASPP50552 380 aaPredicted RBP7.16□□□□□ -1.26
SMG1-207ENST00000563235 NEUROD2Q15784 382 aa7.16□□□□□ -1.26
SMG1-207ENST00000563235 ZNF692Q9BU19 519 aaPredicted RBP7.16□□□□□ -1.26
SMG1-207ENST00000563235 POTEHQ6S545 545 aa7.15□□□□□ -1.26
SMG1-207ENST00000563235 BRPF3Q9ULD4 1205 aa7.13□□□□□ -1.27
SMG1-207ENST00000563235 FGD1P98174 961 aa7.12□□□□□ -1.27
SMG1-207ENST00000563235 APBB1O00213 710 aa7.11□□□□□ -1.27
SMG1-207ENST00000563235 CCDC136Q96JN2 1154 aa7.11□□□□□ -1.27
SMG1-207ENST00000563235 BCCIPQ9P287 314 aaKnown RBP eCLIP7.1□□□□□ -1.27
SMG1-207ENST00000563235 CCDC180Q9P1Z9 1646 aa7.1□□□□□ -1.27
SMG1-207ENST00000563235 RGL2O15211 777 aa7.1□□□□□ -1.27
SMG1-207ENST00000563235 FAM177A1Q8N128 213 aaPredicted RBP7.09□□□□□ -1.27
SMG1-207ENST00000563235 ZFP91Q96JP5 570 aaPredicted RBP7.09□□□□□ -1.27
SMG1-207ENST00000563235 CWC22Q9HCG8 908 aaKnown RBP7.07□□□□□ -1.28
SMG1-207ENST00000563235 USP35Q9P2H5 1018 aa7.07□□□□□ -1.28
SMG1-207ENST00000563235 ECM2O94769 699 aaPredicted RBP7.07□□□□□ -1.28
SMG1-207ENST00000563235 ZNF592Q92610 1267 aa7.07□□□□□ -1.28
SMG1-207ENST00000563235 TMED8Q6PL24 325 aaPredicted RBP7.06□□□□□ -1.28
SMG1-207ENST00000563235 LMOD2Q6P5Q4 547 aa7.06□□□□□ -1.28
SMG1-207ENST00000563235 RSPH4AQ5TD94 716 aa7.05□□□□□ -1.28
SMG1-207ENST00000563235 ATXN8OSP0DMR3 200 aa7.04□□□□□ -1.28
SMG1-207ENST00000563235 AEBP1Q8IUX7 1158 aa7.04□□□□□ -1.28
SMG1-207ENST00000563235 CERS3Q8IU89 383 aa7.03□□□□□ -1.28
SMG1-207ENST00000563235 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.03□□□□□ -1.28
SMG1-207ENST00000563235 A0A0U1RQG5 324 aaPredicted RBP7.03□□□□□ -1.28
SMG1-207ENST00000563235 RBM42Q9BTD8 480 aaKnown RBP7.03□□□□□ -1.28
SMG1-207ENST00000563235 ABCB7O75027 752 aa7.02□□□□□ -1.29
SMG1-207ENST00000563235 MYCNP04198 464 aaPredicted RBP7.02□□□□□ -1.29
SMG1-207ENST00000563235 MFAP1P55081 439 aaKnown RBP7.02□□□□□ -1.29
SMG1-207ENST00000563235 TICAM2Q86XR7 235 aa7.01□□□□□ -1.29
SMG1-207ENST00000563235 CCDC82Q8N4S0 544 aa7.01□□□□□ -1.29
SMG1-207ENST00000563235 SLC24A3Q9HC58 644 aa7.01□□□□□ -1.29
SMG1-207ENST00000563235 CHGAP10645 457 aaKnown RBP7□□□□□ -1.29
SMG1-207ENST00000563235 TMCO4Q5TGY1 634 aa6.99□□□□□ -1.29
SMG1-207ENST00000563235 PPM1GO15355 546 aaPredicted RBP6.99□□□□□ -1.29
SMG1-207ENST00000563235 RB1CC1Q8TDY2 1594 aa6.97□□□□□ -1.29
SMG1-207ENST00000563235 PSMD1Q99460 953 aa6.96□□□□□ -1.3
SMG1-207ENST00000563235 GZF1Q9H116 711 aaPredicted RBP6.96□□□□□ -1.3
SMG1-207ENST00000563235 E9PSI1 815 aa6.95□□□□□ -1.3
SMG1-207ENST00000563235 MKRN3Q13064 507 aaKnown RBP6.95□□□□□ -1.3
SMG1-207ENST00000563235 ZEB1P37275 1124 aaPredicted RBP6.94□□□□□ -1.3
SMG1-207ENST00000563235 PRDM16Q9HAZ2 1276 aa6.94□□□□□ -1.3
SMG1-207ENST00000563235 TRAIPQ9BWF2 469 aa6.94□□□□□ -1.3
SMG1-207ENST00000563235 CLSTN1O94985 981 aa6.93□□□□□ -1.3
SMG1-207ENST00000563235 ZNF526Q8TF50 670 aaPredicted RBP6.93□□□□□ -1.3
SMG1-207ENST00000563235 ZC3H15Q8WU90 426 aaKnown RBP6.93□□□□□ -1.3
SMG1-207ENST00000563235 ARID4BQ4LE39 1312 aaPredicted RBP6.93□□□□□ -1.3
SMG1-207ENST00000563235 GPBP1L1Q9HC44 474 aaPredicted RBP6.91□□□□□ -1.3
SMG1-207ENST00000563235 IL27Q8NEV9 243 aa6.9□□□□□ -1.3
SMG1-207ENST00000563235 ZNF326Q5BKZ1 582 aaKnown RBP6.9□□□□□ -1.3
SMG1-207ENST00000563235 CC2D2BQ6DHV5 1058 aa6.9□□□□□ -1.3
SMG1-207ENST00000563235 NAP1L5Q96NT1 182 aaPredicted RBP6.9□□□□□ -1.3
SMG1-207ENST00000563235 ATF5Q9Y2D1 282 aaPredicted RBP6.9□□□□□ -1.3
SMG1-207ENST00000563235 ZNF316A6NFI3 1004 aaPredicted RBP6.9□□□□□ -1.31
SMG1-207ENST00000563235 KDM4AO75164 1064 aa6.9□□□□□ -1.31
SMG1-207ENST00000563235 POLA2Q14181 598 aa6.89□□□□□ -1.31
SMG1-207ENST00000563235 PRDM10Q9NQV6 1147 aa6.89□□□□□ -1.31
SMG1-207ENST00000563235 ZBTB12Q9Y330 459 aaPredicted RBP6.89□□□□□ -1.31
SMG1-207ENST00000563235 CCDC27Q2M243 656 aa6.88□□□□□ -1.31
SMG1-207ENST00000563235 ANO8Q9HCE9 1232 aaPredicted RBP6.88□□□□□ -1.31
SMG1-207ENST00000563235 AAMPQ13685 434 aa6.87□□□□□ -1.31
SMG1-207ENST00000563235 CUX2O14529 1486 aa6.87□□□□□ -1.31
SMG1-207ENST00000563235 CCDC125Q86Z20 511 aa6.86□□□□□ -1.31
SMG1-207ENST00000563235 IRF5Q13568 498 aa6.86□□□□□ -1.31
SMG1-207ENST00000563235 NKX1-1Q15270 411 aaPredicted RBP6.85□□□□□ -1.31
SMG1-207ENST00000563235 CHRDL2Q6WN34 429 aa6.84□□□□□ -1.31
SMG1-207ENST00000563235 PROM2Q8N271 834 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms