RNA–Protein interactions for RNA: ENST00000562199.1

CAPN3-211, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 385 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-211ENST00000562199 PLCD3Q8N3E9 789 aa10.03□□□□□ -0.8
CAPN3-211ENST00000562199 LHX8Q68G74 356 aa9.98□□□□□ -0.81
CAPN3-211ENST00000562199 PELP1Q8IZL8 1130 aaKnown RBP9.95□□□□□ -0.82
CAPN3-211ENST00000562199 RASEFQ8IZ41 740 aa9.93□□□□□ -0.82
CAPN3-211ENST00000562199 MS4A3Q96HJ5 214 aa9.92□□□□□ -0.82
CAPN3-211ENST00000562199 CCDC61Q9Y6R9 512 aa9.91□□□□□ -0.82
CAPN3-211ENST00000562199 KIF12Q96FN5 646 aa9.86□□□□□ -0.83
CAPN3-211ENST00000562199 ZBTB47Q9UFB7 747 aaPredicted RBP9.86□□□□□ -0.83
CAPN3-211ENST00000562199 FBXO3Q9UK99 471 aa9.86□□□□□ -0.83
CAPN3-211ENST00000562199 MAP3K13O43283 966 aa9.84□□□□□ -0.83
CAPN3-211ENST00000562199 NUBP1P53384 320 aa9.84□□□□□ -0.83
CAPN3-211ENST00000562199 ATMINO43313 823 aaPredicted RBP9.8□□□□□ -0.84
CAPN3-211ENST00000562199 TRPC6Q9Y210 931 aa9.8□□□□□ -0.84
CAPN3-211ENST00000562199 ERICH6Q7L0X2 663 aa9.79□□□□□ -0.84
CAPN3-211ENST00000562199 ASTLQ6HA08 431 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-211ENST00000562199 DCAF8Q5TAQ9 597 aa9.77□□□□□ -0.85
CAPN3-211ENST00000562199 KLHL34Q8N239 644 aa9.77□□□□□ -0.85
CAPN3-211ENST00000562199 FAM212AQ96EL1 285 aa9.77□□□□□ -0.85
CAPN3-211ENST00000562199 POTEB2H3BUK9 544 aa9.76□□□□□ -0.85
CAPN3-211ENST00000562199 PRKCSHP14314 528 aaPredicted RBP9.76□□□□□ -0.85
CAPN3-211ENST00000562199 VASPP50552 380 aaPredicted RBP9.76□□□□□ -0.85
CAPN3-211ENST00000562199 ATN1P54259 1190 aaPredicted RBP9.76□□□□□ -0.85
CAPN3-211ENST00000562199 PCDHB13Q9Y5F0 798 aa9.75□□□□□ -0.85
CAPN3-211ENST00000562199 RTN4Q9NQC3 1192 aaKnown RBP9.74□□□□□ -0.85
CAPN3-211ENST00000562199 METRNQ9UJH8 293 aa9.74□□□□□ -0.85
CAPN3-211ENST00000562199 BMP2KQ9NSY1 1161 aaPredicted RBP9.73□□□□□ -0.85
CAPN3-211ENST00000562199 SLC39A7Q92504 469 aa9.72□□□□□ -0.85
CAPN3-211ENST00000562199 C7P10643 843 aa9.71□□□□□ -0.86
CAPN3-211ENST00000562199 PYGBP11216 843 aa9.7□□□□□ -0.86
CAPN3-211ENST00000562199 TIE1P35590 1138 aa9.69□□□□□ -0.86
CAPN3-211ENST00000562199 IFNL1Q8IU54 200 aa9.69□□□□□ -0.86
CAPN3-211ENST00000562199 OTUD5Q96G74 571 aa9.68□□□□□ -0.86
CAPN3-211ENST00000562199 TTLL13PA6NNM8 815 aa9.67□□□□□ -0.86
CAPN3-211ENST00000562199 SGIP1Q9BQI5 828 aa9.67□□□□□ -0.86
CAPN3-211ENST00000562199 POTEJP0CG39 1038 aa9.63□□□□□ -0.87
CAPN3-211ENST00000562199 NISCHQ9Y2I1 1504 aa9.62□□□□□ -0.87
CAPN3-211ENST00000562199 IFNLR1Q8IU57 520 aaPredicted RBP9.62□□□□□ -0.87
CAPN3-211ENST00000562199 PCDHB8Q9UN66 801 aa9.62□□□□□ -0.87
CAPN3-211ENST00000562199 TRIM35Q9UPQ4 493 aa9.62□□□□□ -0.87
CAPN3-211ENST00000562199 POTEFA5A3E0 1075 aa9.61□□□□□ -0.87
CAPN3-211ENST00000562199 AMER1Q5JTC6 1135 aaPredicted RBP9.61□□□□□ -0.87
CAPN3-211ENST00000562199 TMEM106CQ9BVX2 250 aa9.61□□□□□ -0.87
CAPN3-211ENST00000562199 SEC24BO95487 1268 aa9.6□□□□□ -0.87
CAPN3-211ENST00000562199 GSE1Q14687 1217 aa9.59□□□□□ -0.87
CAPN3-211ENST00000562199 COLQQ9Y215 455 aaPredicted RBP9.59□□□□□ -0.87
CAPN3-211ENST00000562199 SPOCK2Q92563 424 aa9.56□□□□□ -0.88
CAPN3-211ENST00000562199 ARXQ96QS3 562 aa9.56□□□□□ -0.88
CAPN3-211ENST00000562199 CIZ1Q9ULV3 898 aaPredicted RBP9.56□□□□□ -0.88
CAPN3-211ENST00000562199 MAMSTRQ6ZN01 415 aa9.53□□□□□ -0.88
CAPN3-211ENST00000562199 IER5LQ5T953 404 aa9.51□□□□□ -0.89
CAPN3-211ENST00000562199 SCUBE2Q9NQ36 999 aa9.51□□□□□ -0.89
CAPN3-211ENST00000562199 CHRM1P11229 460 aaPredicted RBP9.48□□□□□ -0.89
CAPN3-211ENST00000562199 ZNF467Q7Z7K2 595 aaPredicted RBP9.48□□□□□ -0.89
CAPN3-211ENST00000562199 PLCG2P16885 1265 aa9.47□□□□□ -0.89
CAPN3-211ENST00000562199 PSEN1P49768 467 aa9.44□□□□□ -0.9
CAPN3-211ENST00000562199 IRX5P78411 483 aaPredicted RBP9.44□□□□□ -0.9
CAPN3-211ENST00000562199 FAM163AQ96GL9 167 aaPredicted RBP9.44□□□□□ -0.9
CAPN3-211ENST00000562199 GOLGA2Q08379 1002 aa9.43□□□□□ -0.9
CAPN3-211ENST00000562199 OCEL1Q9H607 264 aa9.42□□□□□ -0.9
CAPN3-211ENST00000562199 POTEMA6NI47 508 aa9.39□□□□□ -0.91
CAPN3-211ENST00000562199 MKRN3Q13064 507 aaKnown RBP9.39□□□□□ -0.91
CAPN3-211ENST00000562199 PDAP1Q13442 181 aaKnown RBP9.38□□□□□ -0.91
CAPN3-211ENST00000562199 SLAIN1Q8ND83 568 aa9.38□□□□□ -0.91
CAPN3-211ENST00000562199 POTEGQ6S5H5 508 aa9.37□□□□□ -0.91
CAPN3-211ENST00000562199 CABP2Q9NPB3 220 aa9.35□□□□□ -0.91
CAPN3-211ENST00000562199 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.34□□□□□ -0.91
CAPN3-211ENST00000562199 RANGAP1P46060 587 aaPredicted RBP9.33□□□□□ -0.92
CAPN3-211ENST00000562199 LCE2DQ5TA82 110 aaPredicted RBP9.33□□□□□ -0.92
CAPN3-211ENST00000562199 PDCD7Q8N8D1 485 aaKnown RBP9.32□□□□□ -0.92
CAPN3-211ENST00000562199 PLSCR2Q9NRY7 297 aa9.32□□□□□ -0.92
CAPN3-211ENST00000562199 TIMELESSQ9UNS1 1208 aa9.32□□□□□ -0.92
CAPN3-211ENST00000562199 TRIM41Q8WV44 630 aa9.3□□□□□ -0.92
CAPN3-211ENST00000562199 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.3□□□□□ -0.92
CAPN3-211ENST00000562199 DPY19L2Q6NUT2 758 aa9.29□□□□□ -0.92
CAPN3-211ENST00000562199 L3MBTL3Q96JM7 780 aaPredicted RBP9.26□□□□□ -0.93
CAPN3-211ENST00000562199 C3orf67Q6ZVT6 689 aa9.24□□□□□ -0.93
CAPN3-211ENST00000562199 EFCAB3Q8N7B9 438 aa9.24□□□□□ -0.93
CAPN3-211ENST00000562199 RNF25Q96BH1 459 aaPredicted RBP9.24□□□□□ -0.93
CAPN3-211ENST00000562199 RIOK3O14730 519 aaKnown RBP9.23□□□□□ -0.93
CAPN3-211ENST00000562199 ST18O60284 1047 aa9.23□□□□□ -0.93
CAPN3-211ENST00000562199 HOMEZQ8IX15 550 aa9.23□□□□□ -0.93
CAPN3-211ENST00000562199 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.21□□□□□ -0.94
CAPN3-211ENST00000562199 EIF5BO60841 1220 aaKnown RBP9.21□□□□□ -0.94
CAPN3-211ENST00000562199 ZFP91Q96JP5 570 aaPredicted RBP9.21□□□□□ -0.94
CAPN3-211ENST00000562199 G3V3G9 751 aa9.2□□□□□ -0.94
CAPN3-211ENST00000562199 ILDR1Q86SU0 546 aaPredicted RBP9.2□□□□□ -0.94
CAPN3-211ENST00000562199 VGFO15240 615 aaPredicted RBP9.18□□□□□ -0.94
CAPN3-211ENST00000562199 BOLA1Q9Y3E2 137 aa9.18□□□□□ -0.94
CAPN3-211ENST00000562199 TULP1O00294 542 aaPredicted RBP9.16□□□□□ -0.94
CAPN3-211ENST00000562199 SNPHO15079 494 aa9.16□□□□□ -0.94
CAPN3-211ENST00000562199 ECM2O94769 699 aaPredicted RBP9.15□□□□□ -0.94
CAPN3-211ENST00000562199 PCDH10Q9P2E7 1040 aa9.15□□□□□ -0.94
CAPN3-211ENST00000562199 TAOK2Q9UL54 1235 aa9.15□□□□□ -0.94
CAPN3-211ENST00000562199 MARVELD3Q96A59 401 aa9.13□□□□□ -0.95
CAPN3-211ENST00000562199 CDAN1Q8IWY9 1227 aa9.12□□□□□ -0.95
CAPN3-211ENST00000562199 PHF8Q9UPP1 1060 aa9.12□□□□□ -0.95
CAPN3-211ENST00000562199 SOX12O15370 315 aa9.11□□□□□ -0.95
CAPN3-211ENST00000562199 BCL11BQ9C0K0 894 aaPredicted RBP9.11□□□□□ -0.95
CAPN3-211ENST00000562199 STK24Q9Y6E0 443 aa9.11□□□□□ -0.95
CAPN3-211ENST00000562199 PKD2Q13563 968 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms