RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 FARP1Q9Y4F1 1045 aaPredicted RBP12.93□□□□□ -0.34
LRRC28-220ENST00000561253 PIP4P2Q8N4L2 257 aa12.86□□□□□ -0.35
LRRC28-220ENST00000561253 PLCB2Q00722 1185 aa12.84□□□□□ -0.35
LRRC28-220ENST00000561253 BBXQ8WY36 941 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-220ENST00000561253 TSPYL2Q9H2G4 693 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-220ENST00000561253 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-220ENST00000561253 CHGAP10645 457 aaKnown RBP12.81□□□□□ -0.36
LRRC28-220ENST00000561253 CHRM1P11229 460 aaPredicted RBP12.81□□□□□ -0.36
LRRC28-220ENST00000561253 RNF25Q96BH1 459 aaPredicted RBP12.81□□□□□ -0.36
LRRC28-220ENST00000561253 RIOK3O14730 519 aaKnown RBP12.8□□□□□ -0.36
LRRC28-220ENST00000561253 PYGBP11216 843 aa12.8□□□□□ -0.36
LRRC28-220ENST00000561253 TAOK2Q9UL54 1235 aa12.8□□□□□ -0.36
LRRC28-220ENST00000561253 PAK3O75914 559 aaPredicted RBP12.74□□□□□ -0.37
LRRC28-220ENST00000561253 HS6ST3Q8IZP7 471 aa12.72□□□□□ -0.37
LRRC28-220ENST00000561253 VGFO15240 615 aaPredicted RBP12.71□□□□□ -0.37
LRRC28-220ENST00000561253 HAP1P54257 671 aaPredicted RBP12.7□□□□□ -0.38
LRRC28-220ENST00000561253 PAXIP1Q6ZW49 1069 aaPredicted RBP12.69□□□□□ -0.38
LRRC28-220ENST00000561253 CFAP44Q96MT7 982 aa12.68□□□□□ -0.38
LRRC28-220ENST00000561253 CCDC61Q9Y6R9 512 aa12.68□□□□□ -0.38
LRRC28-220ENST00000561253 STK25O00506 426 aa12.66□□□□□ -0.38
LRRC28-220ENST00000561253 ZNF467Q7Z7K2 595 aaPredicted RBP12.64□□□□□ -0.39
LRRC28-220ENST00000561253 SPRYD3Q8NCJ5 442 aa12.64□□□□□ -0.39
LRRC28-220ENST00000561253 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.62□□□□□ -0.39
LRRC28-220ENST00000561253 ZFP91Q96JP5 570 aaPredicted RBP12.62□□□□□ -0.39
LRRC28-220ENST00000561253 SGIP1Q9BQI5 828 aa12.62□□□□□ -0.39
LRRC28-220ENST00000561253 CD44P16070 742 aaKnown RBP12.6□□□□□ -0.39
LRRC28-220ENST00000561253 BCL11BQ9C0K0 894 aaPredicted RBP12.59□□□□□ -0.39
LRRC28-220ENST00000561253 DNAJC5Q9H3Z4 198 aa12.59□□□□□ -0.39
LRRC28-220ENST00000561253 ZRANB1Q9UGI0 708 aa12.59□□□□□ -0.39
LRRC28-220ENST00000561253 STK24Q9Y6E0 443 aa12.59□□□□□ -0.39
LRRC28-220ENST00000561253 PCDHB8Q9UN66 801 aa12.57□□□□□ -0.4
LRRC28-220ENST00000561253 PCDHB13Q9Y5F0 798 aa12.57□□□□□ -0.4
LRRC28-220ENST00000561253 ZNF579Q8NAF0 562 aaKnown RBP12.56□□□□□ -0.4
LRRC28-220ENST00000561253 PDAP1Q13442 181 aaKnown RBP12.55□□□□□ -0.4
LRRC28-220ENST00000561253 CCDC180Q9P1Z9 1646 aa12.54□□□□□ -0.4
LRRC28-220ENST00000561253 MAP3K13O43283 966 aa12.53□□□□□ -0.4
LRRC28-220ENST00000561253 KIF12Q96FN5 646 aa12.53□□□□□ -0.4
LRRC28-220ENST00000561253 NKX1-1Q15270 411 aaPredicted RBP12.51□□□□□ -0.41
LRRC28-220ENST00000561253 IFNL1Q8IU54 200 aa12.5□□□□□ -0.41
LRRC28-220ENST00000561253 PSEN1P49768 467 aa12.49□□□□□ -0.41
LRRC28-220ENST00000561253 C19orf67A6NJJ6 358 aa12.48□□□□□ -0.41
LRRC28-220ENST00000561253 VSIG10Q8N0Z9 540 aa12.48□□□□□ -0.41
LRRC28-220ENST00000561253 PHF12Q96QT6 1004 aa12.48□□□□□ -0.41
LRRC28-220ENST00000561253 RYDENQ9NUL5 291 aaKnown RBP12.44□□□□□ -0.42
LRRC28-220ENST00000561253 GTPBP6O43824 516 aaPredicted RBP12.43□□□□□ -0.42
LRRC28-220ENST00000561253 TSHZ2Q9NRE2 1034 aa12.43□□□□□ -0.42
LRRC28-220ENST00000561253 HAX1O00165 279 aa12.38□□□□□ -0.43
LRRC28-220ENST00000561253 KDM2AQ9Y2K7 1162 aa12.35□□□□□ -0.43
LRRC28-220ENST00000561253 MS4A3Q96HJ5 214 aa12.34□□□□□ -0.43
LRRC28-220ENST00000561253 CABP2Q9NPB3 220 aa12.34□□□□□ -0.43
LRRC28-220ENST00000561253 EFCAB3Q8N7B9 438 aa12.3□□□□□ -0.44
LRRC28-220ENST00000561253 TMEM106CQ9BVX2 250 aa12.3□□□□□ -0.44
LRRC28-220ENST00000561253 GOLGA2Q08379 1002 aa12.28□□□□□ -0.44
LRRC28-220ENST00000561253 MFRPQ9BY79 579 aa12.27□□□□□ -0.45
LRRC28-220ENST00000561253 SOX12O15370 315 aa12.26□□□□□ -0.45
LRRC28-220ENST00000561253 TRPC6Q9Y210 931 aa12.26□□□□□ -0.45
LRRC28-220ENST00000561253 CLCN6P51797 869 aa12.25□□□□□ -0.45
LRRC28-220ENST00000561253 NLRP6P59044 892 aa12.24□□□□□ -0.45
LRRC28-220ENST00000561253 EVX2Q03828 476 aa12.24□□□□□ -0.45
LRRC28-220ENST00000561253 TIE1P35590 1138 aa12.22□□□□□ -0.45
LRRC28-220ENST00000561253 PHF8Q9UPP1 1060 aa12.22□□□□□ -0.45
LRRC28-220ENST00000561253 GALR2O43603 387 aaPredicted RBP12.21□□□□□ -0.45
LRRC28-220ENST00000561253 MKRN3Q13064 507 aaKnown RBP12.19□□□□□ -0.46
LRRC28-220ENST00000561253 FBXO22Q8NEZ5 403 aa12.19□□□□□ -0.46
LRRC28-220ENST00000561253 TTLL13PA6NNM8 815 aa12.18□□□□□ -0.46
LRRC28-220ENST00000561253 BCANQ96GW7 911 aa12.18□□□□□ -0.46
LRRC28-220ENST00000561253 BMP2KQ9NSY1 1161 aaPredicted RBP12.17□□□□□ -0.46
LRRC28-220ENST00000561253 POTEHQ6S545 545 aa12.15□□□□□ -0.46
LRRC28-220ENST00000561253 ABCC9O60706 1549 aa12.15□□□□□ -0.46
LRRC28-220ENST00000561253 PPP1R37O75864 691 aa12.13□□□□□ -0.47
LRRC28-220ENST00000561253 TRIM35Q9UPQ4 493 aa12.12□□□□□ -0.47
LRRC28-220ENST00000561253 MS4A4AQ96JQ5 239 aa12.09□□□□□ -0.47
LRRC28-220ENST00000561253 CADPS2Q86UW7 1296 aa12.08□□□□□ -0.48
LRRC28-220ENST00000561253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.08□□□□□ -0.481e-7■■■□□ 18.9
LRRC28-220ENST00000561253 GABBR2O75899 941 aa12.06□□□□□ -0.48
LRRC28-220ENST00000561253 WDR70Q9NW82 654 aa12.06□□□□□ -0.48
LRRC28-220ENST00000561253 ATN1P54259 1190 aaPredicted RBP12.04□□□□□ -0.48
LRRC28-220ENST00000561253 ATMINO43313 823 aaPredicted RBP12.03□□□□□ -0.48
LRRC28-220ENST00000561253 ASTLQ6HA08 431 aaPredicted RBP12.03□□□□□ -0.48
LRRC28-220ENST00000561253 NBR1Q14596 966 aa12□□□□□ -0.49
LRRC28-220ENST00000561253 ILDR1Q86SU0 546 aaPredicted RBP12□□□□□ -0.49
LRRC28-220ENST00000561253 DCBLD2Q96PD2 775 aa11.99□□□□□ -0.49
LRRC28-220ENST00000561253 IER5LQ5T953 404 aa11.97□□□□□ -0.49
LRRC28-220ENST00000561253 P3H3Q8IVL6 736 aa11.97□□□□□ -0.49
LRRC28-220ENST00000561253 OCEL1Q9H607 264 aa11.94□□□□□ -0.5
LRRC28-220ENST00000561253 PDE4AP27815 886 aa11.93□□□□□ -0.5
LRRC28-220ENST00000561253 IRX5P78411 483 aaPredicted RBP11.93□□□□□ -0.5
LRRC28-220ENST00000561253 DPY19L2Q6NUT2 758 aa11.93□□□□□ -0.5
LRRC28-220ENST00000561253 PDCD7Q8N8D1 485 aaKnown RBP11.92□□□□□ -0.5
LRRC28-220ENST00000561253 PLCG2P16885 1265 aa11.91□□□□□ -0.5
LRRC28-220ENST00000561253 NCKAP5LQ9HCH0 1330 aa11.9□□□□□ -0.5
LRRC28-220ENST00000561253 ZCCHC6Q5VYS8 1495 aaKnown RBP11.9□□□□□ -0.5
LRRC28-220ENST00000561253 LARP6Q9BRS8 491 aaKnown RBP11.9□□□□□ -0.5
LRRC28-220ENST00000561253 G3V3G9 751 aa11.89□□□□□ -0.51
LRRC28-220ENST00000561253 KCNV2Q8TDN2 545 aa11.88□□□□□ -0.51
LRRC28-220ENST00000561253 CRISPLD2Q9H0B8 497 aa11.88□□□□□ -0.51
LRRC28-220ENST00000561253 SEC24BO95487 1268 aa11.87□□□□□ -0.51
LRRC28-220ENST00000561253 E2F4Q16254 413 aa11.87□□□□□ -0.51
LRRC28-220ENST00000561253 MICALL2Q8IY33 904 aa11.87□□□□□ -0.51
LRRC28-220ENST00000561253 SP7Q8TDD2 431 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms