RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 ZBTB12Q9Y330 459 aaPredicted RBP3.44□□□□□ -1.86
RTF1-207ENST00000561076 TRHP20396 242 aaPredicted RBP3.43□□□□□ -1.86
RTF1-207ENST00000561076 ARID3AQ99856 593 aa3.43□□□□□ -1.86
RTF1-207ENST00000561076 UBTFP17480 764 aaKnown RBP3.42□□□□□ -1.86
RTF1-207ENST00000561076 BRPF1P55201 1214 aaPredicted RBP3.42□□□□□ -1.86
RTF1-207ENST00000561076 TRIM26Q12899 539 aaPredicted RBP3.42□□□□□ -1.86
RTF1-207ENST00000561076 GSE1Q14687 1217 aa3.42□□□□□ -1.86
RTF1-207ENST00000561076 RSPH6AQ9H0K4 717 aa3.42□□□□□ -1.86
RTF1-207ENST00000561076 CCDC9Q9Y3X0 531 aaKnown RBP3.42□□□□□ -1.86
RTF1-207ENST00000561076 STK25O00506 426 aa3.41□□□□□ -1.86
RTF1-207ENST00000561076 PDIA4P13667 645 aaKnown RBP3.4□□□□□ -1.87
RTF1-207ENST00000561076 POLA2Q14181 598 aa3.4□□□□□ -1.87
RTF1-207ENST00000561076 ZNF692Q9BU19 519 aaPredicted RBP3.4□□□□□ -1.87
RTF1-207ENST00000561076 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.39□□□□□ -1.87
RTF1-207ENST00000561076 ZMYND15Q9H091 742 aa3.39□□□□□ -1.87
RTF1-207ENST00000561076 RIOK3O14730 519 aaKnown RBP3.38□□□□□ -1.87
RTF1-207ENST00000561076 GTPBP6O43824 516 aaPredicted RBP3.38□□□□□ -1.87
RTF1-207ENST00000561076 DCAF8Q5TAQ9 597 aa3.38□□□□□ -1.87
RTF1-207ENST00000561076 VGFO15240 615 aaPredicted RBP3.37□□□□□ -1.87
RTF1-207ENST00000561076 SMYD5Q6GMV2 418 aa3.37□□□□□ -1.87
RTF1-207ENST00000561076 PELP1Q8IZL8 1130 aaKnown RBP3.37□□□□□ -1.87
RTF1-207ENST00000561076 STK24Q9Y6E0 443 aa3.37□□□□□ -1.87
RTF1-207ENST00000561076 CAPN15O75808 1086 aa3.36□□□□□ -1.87
RTF1-207ENST00000561076 MYT1Q01538 1121 aa3.36□□□□□ -1.87
RTF1-207ENST00000561076 SLC24A3Q9HC58 644 aa3.36□□□□□ -1.87
RTF1-207ENST00000561076 ZC3H15Q8WU90 426 aaKnown RBP3.35□□□□□ -1.87
RTF1-207ENST00000561076 NKX1-1Q15270 411 aaPredicted RBP3.34□□□□□ -1.87
RTF1-207ENST00000561076 PABPN1Q86U42 306 aaKnown RBP eCLIP3.34□□□□□ -1.87
RTF1-207ENST00000561076 KRI1Q8N9T8 703 aaKnown RBP3.34□□□□□ -1.87
RTF1-207ENST00000561076 HRCP23327 699 aa3.33□□□□□ -1.88
RTF1-207ENST00000561076 KCNV2Q8TDN2 545 aa3.33□□□□□ -1.88
RTF1-207ENST00000561076 FAM212AQ96EL1 285 aa3.33□□□□□ -1.88
RTF1-207ENST00000561076 BCL11BQ9C0K0 894 aaPredicted RBP3.33□□□□□ -1.88
RTF1-207ENST00000561076 SPDYE2BA6NHP3 402 aa3.32□□□□□ -1.88
RTF1-207ENST00000561076 SPDYE6P0CI01 402 aa3.32□□□□□ -1.88
RTF1-207ENST00000561076 SPDYE2Q495Y8 402 aa3.32□□□□□ -1.88
RTF1-207ENST00000561076 IL27Q8NEV9 243 aa3.32□□□□□ -1.88
RTF1-207ENST00000561076 APBB1O00213 710 aa3.31□□□□□ -1.88
RTF1-207ENST00000561076 ARHGEF1Q92888 912 aaKnown RBP3.31□□□□□ -1.88
RTF1-207ENST00000561076 HMGB1P09429 215 aaKnown RBP3.3□□□□□ -1.88
RTF1-207ENST00000561076 RNF25Q96BH1 459 aaPredicted RBP3.3□□□□□ -1.88
RTF1-207ENST00000561076 AK7Q96M32 723 aa3.3□□□□□ -1.88
RTF1-207ENST00000561076 TTBK1Q5TCY1 1321 aaPredicted RBP3.29□□□□□ -1.88
RTF1-207ENST00000561076 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.29□□□□□ -1.88
RTF1-207ENST00000561076 FLIIQ13045 1269 aa3.29□□□□□ -1.88
RTF1-207ENST00000561076 E2F4Q16254 413 aa3.29□□□□□ -1.88
RTF1-207ENST00000561076 ZFP91Q96JP5 570 aaPredicted RBP3.29□□□□□ -1.88
RTF1-207ENST00000561076 ARID3CA6NKF2 412 aa3.28□□□□□ -1.88
RTF1-207ENST00000561076 ABCB7O75027 752 aa3.28□□□□□ -1.88
RTF1-207ENST00000561076 KCTD17Q8N5Z5 321 aa3.28□□□□□ -1.88
RTF1-207ENST00000561076 MYT1LQ9UL68 1186 aa3.28□□□□□ -1.88
RTF1-207ENST00000561076 SEMA3EO15041 775 aa3.27□□□□□ -1.89
RTF1-207ENST00000561076 RAD21O60216 631 aa3.27□□□□□ -1.89
RTF1-207ENST00000561076 ZMYND10O75800 440 aa3.27□□□□□ -1.89
RTF1-207ENST00000561076 AEBP1Q8IUX7 1158 aa3.27□□□□□ -1.89
RTF1-207ENST00000561076 GPBP1L1Q9HC44 474 aaPredicted RBP3.27□□□□□ -1.89
RTF1-207ENST00000561076 SPINK5Q9NQ38 1064 aaPredicted RBP3.27□□□□□ -1.89
RTF1-207ENST00000561076 TESPA1A2RU30 521 aaPredicted RBP3.26□□□□□ -1.89
RTF1-207ENST00000561076 GPIHBP1Q8IV16 184 aa3.26□□□□□ -1.89
RTF1-207ENST00000561076 OSCARQ8IYS5 282 aa3.26□□□□□ -1.89
RTF1-207ENST00000561076 CCDC97Q96F63 343 aaPredicted RBP3.26□□□□□ -1.89
RTF1-207ENST00000561076 SGIP1Q9BQI5 828 aa3.26□□□□□ -1.89
RTF1-207ENST00000561076 KDM4CQ9H3R0 1056 aa3.26□□□□□ -1.89
RTF1-207ENST00000561076 ATP1B4Q9UN42 357 aaPredicted RBP3.26□□□□□ -1.89
RTF1-207ENST00000561076 SSUH2Q9Y2M2 353 aa3.26□□□□□ -1.89
RTF1-207ENST00000561076 SHROOM4Q9ULL8 1493 aa3.26□□□□□ -1.89
RTF1-207ENST00000561076 ZNF316A6NFI3 1004 aaPredicted RBP3.25□□□□□ -1.89
RTF1-207ENST00000561076 TMCO4Q5TGY1 634 aa3.25□□□□□ -1.89
RTF1-207ENST00000561076 BARGINQ6ZT62 677 aa3.25□□□□□ -1.89
RTF1-207ENST00000561076 CHRM1P11229 460 aaPredicted RBP3.24□□□□□ -1.89
RTF1-207ENST00000561076 CCDC82Q8N4S0 544 aa3.24□□□□□ -1.89
RTF1-207ENST00000561076 PYGBP11216 843 aa3.23□□□□□ -1.89
RTF1-207ENST00000561076 CDK11BP21127 795 aaKnown RBP3.23□□□□□ -1.89
RTF1-207ENST00000561076 NUBP1P53384 320 aa3.23□□□□□ -1.89
RTF1-207ENST00000561076 PDE4CQ08493 712 aa3.23□□□□□ -1.89
RTF1-207ENST00000561076 PDE4DQ08499 809 aa3.23□□□□□ -1.89
RTF1-207ENST00000561076 CADPS2Q86UW7 1296 aa3.23□□□□□ -1.89
RTF1-207ENST00000561076 DDRGK1Q96HY6 314 aa3.23□□□□□ -1.89
RTF1-207ENST00000561076 CDK11AQ9UQ88 783 aaPredicted RBP3.23□□□□□ -1.89
RTF1-207ENST00000561076 RBM25P49756 843 aaKnown RBP3.22□□□□□ -1.89
RTF1-207ENST00000561076 MKRN3Q13064 507 aaKnown RBP3.22□□□□□ -1.89
RTF1-207ENST00000561076 ZNF467Q7Z7K2 595 aaPredicted RBP3.22□□□□□ -1.89
RTF1-207ENST00000561076 FBXW7Q969H0 707 aa3.22□□□□□ -1.89
RTF1-207ENST00000561076 SERPINA10Q9UK55 444 aa3.22□□□□□ -1.89
RTF1-207ENST00000561076 PDE4AP27815 886 aa3.21□□□□□ -1.9
RTF1-207ENST00000561076 PCMTD1Q96MG8 357 aaPredicted RBP3.21□□□□□ -1.9
RTF1-207ENST00000561076 C1orf115Q9H7X2 142 aa3.21□□□□□ -1.9
RTF1-207ENST00000561076 ACIN1Q9UKV3 1341 aaKnown RBP3.2□□□□□ -1.9
RTF1-207ENST00000561076 PATL2C9JE40 543 aaKnown RBP3.2□□□□□ -1.9
RTF1-207ENST00000561076 E9PSI1 815 aa3.2□□□□□ -1.9
RTF1-207ENST00000561076 TRIM66O15016 1216 aa3.2□□□□□ -1.9
RTF1-207ENST00000561076 TRAK2O60296 914 aa3.2□□□□□ -1.9
RTF1-207ENST00000561076 HSP90B1P14625 803 aaKnown RBP3.2□□□□□ -1.9
RTF1-207ENST00000561076 NECTIN2Q92692 538 aa3.2□□□□□ -1.9
RTF1-207ENST00000561076 LARP6Q9BRS8 491 aaKnown RBP3.2□□□□□ -1.9
RTF1-207ENST00000561076 TRAIPQ9BWF2 469 aa3.2□□□□□ -1.9
RTF1-207ENST00000561076 A6NJR5 290 aa3.19□□□□□ -1.9
RTF1-207ENST00000561076 NLRP6P59044 892 aa3.19□□□□□ -1.9
RTF1-207ENST00000561076 PDAP1Q13442 181 aaKnown RBP3.19□□□□□ -1.9
RTF1-207ENST00000561076 WWC1Q8IX03 1113 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms