RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 METRNQ9UJH8 293 aa8.44□□□□□ -1.06
SPG11-223ENST00000560858 MAMSTRQ6ZN01 415 aa8.43□□□□□ -1.06
SPG11-223ENST00000560858 ATMINO43313 823 aaPredicted RBP8.42□□□□□ -1.06
SPG11-223ENST00000560858 MS4A3Q96HJ5 214 aa8.42□□□□□ -1.06
SPG11-223ENST00000560858 POTEGQ6S5H5 508 aa8.41□□□□□ -1.06
SPG11-223ENST00000560858 TSPYL2Q9H2G4 693 aaPredicted RBP8.41□□□□□ -1.06
SPG11-223ENST00000560858 PCDH10Q9P2E7 1040 aa8.4□□□□□ -1.06
SPG11-223ENST00000560858 PLEKHG5O94827 1062 aa8.38□□□□□ -1.07
SPG11-223ENST00000560858 SCUBE2Q9NQ36 999 aa8.36□□□□□ -1.07
SPG11-223ENST00000560858 CCDC61Q9Y6R9 512 aa8.35□□□□□ -1.07
SPG11-223ENST00000560858 POTEJP0CG39 1038 aa8.32□□□□□ -1.08
SPG11-223ENST00000560858 ATN1P54259 1190 aaPredicted RBP8.32□□□□□ -1.08
SPG11-223ENST00000560858 KIF12Q96FN5 646 aa8.32□□□□□ -1.08
SPG11-223ENST00000560858 MIER1Q8N108 512 aa8.31□□□□□ -1.08
SPG11-223ENST00000560858 PROM2Q8N271 834 aa8.31□□□□□ -1.08
SPG11-223ENST00000560858 FAM163AQ96GL9 167 aaPredicted RBP8.31□□□□□ -1.08
SPG11-223ENST00000560858 TIE1P35590 1138 aa8.27□□□□□ -1.09
SPG11-223ENST00000560858 BMP2KQ9NSY1 1161 aaPredicted RBP8.27□□□□□ -1.09
SPG11-223ENST00000560858 MAP3K13O43283 966 aa8.26□□□□□ -1.09
SPG11-223ENST00000560858 SEC24BO95487 1268 aa8.26□□□□□ -1.09
SPG11-223ENST00000560858 RASEFQ8IZ41 740 aa8.22□□□□□ -1.09
SPG11-223ENST00000560858 SGIP1Q9BQI5 828 aa8.21□□□□□ -1.1
SPG11-223ENST00000560858 TRPC6Q9Y210 931 aa8.21□□□□□ -1.1
SPG11-223ENST00000560858 POTEFA5A3E0 1075 aa8.2□□□□□ -1.1
SPG11-223ENST00000560858 TTLL13PA6NNM8 815 aa8.2□□□□□ -1.1
SPG11-223ENST00000560858 PLCD3Q8N3E9 789 aa8.2□□□□□ -1.1
SPG11-223ENST00000560858 ZBTB47Q9UFB7 747 aaPredicted RBP8.2□□□□□ -1.1
SPG11-223ENST00000560858 LCE2DQ5TA82 110 aaPredicted RBP8.19□□□□□ -1.1
SPG11-223ENST00000560858 IER5LQ5T953 404 aa8.18□□□□□ -1.1
SPG11-223ENST00000560858 COLQQ9Y215 455 aaPredicted RBP8.17□□□□□ -1.1
SPG11-223ENST00000560858 PCDHB13Q9Y5F0 798 aa8.17□□□□□ -1.1
SPG11-223ENST00000560858 TRIM35Q9UPQ4 493 aa8.16□□□□□ -1.1
SPG11-223ENST00000560858 CDAN1Q8IWY9 1227 aa8.11□□□□□ -1.11
SPG11-223ENST00000560858 SLAIN1Q8ND83 568 aa8.1□□□□□ -1.11
SPG11-223ENST00000560858 FAM212AQ96EL1 285 aa8.1□□□□□ -1.11
SPG11-223ENST00000560858 NUBP1P53384 320 aa8.09□□□□□ -1.11
SPG11-223ENST00000560858 IFNL1Q8IU54 200 aa8.09□□□□□ -1.11
SPG11-223ENST00000560858 TMEM106CQ9BVX2 250 aa8.09□□□□□ -1.11
SPG11-223ENST00000560858 PLCG2P16885 1265 aa8.08□□□□□ -1.12
SPG11-223ENST00000560858 ST18O60284 1047 aa8.05□□□□□ -1.12
SPG11-223ENST00000560858 OCEL1Q9H607 264 aa8.02□□□□□ -1.13
SPG11-223ENST00000560858 SNPHO15079 494 aa8.01□□□□□ -1.13
SPG11-223ENST00000560858 IRX5P78411 483 aaPredicted RBP8.01□□□□□ -1.13
SPG11-223ENST00000560858 DCAF8Q5TAQ9 597 aa8.01□□□□□ -1.13
SPG11-223ENST00000560858 TMEM121BQ9BXQ6 578 aaPredicted RBP7.99□□□□□ -1.13
SPG11-223ENST00000560858 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.98□□□□□ -1.13
SPG11-223ENST00000560858 PYGBP11216 843 aa7.96□□□□□ -1.14
SPG11-223ENST00000560858 FKBP8Q14318 412 aa7.93□□□□□ -1.14
SPG11-223ENST00000560858 GOLGA2Q08379 1002 aa7.92□□□□□ -1.14
SPG11-223ENST00000560858 FBXO3Q9UK99 471 aa7.92□□□□□ -1.14
SPG11-223ENST00000560858 PCDHB8Q9UN66 801 aa7.92□□□□□ -1.14
SPG11-223ENST00000560858 MMRN1Q13201 1228 aa7.9□□□□□ -1.14
SPG11-223ENST00000560858 SPNS2Q8IVW8 549 aa7.9□□□□□ -1.14
SPG11-223ENST00000560858 MKRN3Q13064 507 aaKnown RBP7.89□□□□□ -1.15
SPG11-223ENST00000560858 C3orf67Q6ZVT6 689 aa7.89□□□□□ -1.15
SPG11-223ENST00000560858 MARVELD3Q96A59 401 aa7.89□□□□□ -1.15
SPG11-223ENST00000560858 L3MBTL3Q96JM7 780 aaPredicted RBP7.89□□□□□ -1.15
SPG11-223ENST00000560858 GSE1Q14687 1217 aa7.88□□□□□ -1.15
SPG11-223ENST00000560858 ZNF467Q7Z7K2 595 aaPredicted RBP7.88□□□□□ -1.15
SPG11-223ENST00000560858 KLHL34Q8N239 644 aa7.86□□□□□ -1.15
SPG11-223ENST00000560858 EMP3P54852 163 aa7.84□□□□□ -1.15
SPG11-223ENST00000560858 PDCD7Q8N8D1 485 aaKnown RBP7.83□□□□□ -1.16
SPG11-223ENST00000560858 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.83□□□□□ -1.161e-6■■■■■ 29.6
SPG11-223ENST00000560858 CHRM1P11229 460 aaPredicted RBP7.81□□□□□ -1.16
SPG11-223ENST00000560858 PSEN1P49768 467 aa7.79□□□□□ -1.16
SPG11-223ENST00000560858 G3V3G9 751 aa7.78□□□□□ -1.16
SPG11-223ENST00000560858 FAM205CA6NFA0 338 aa7.77□□□□□ -1.17
SPG11-223ENST00000560858 HS3ST6Q96QI5 342 aa7.77□□□□□ -1.17
SPG11-223ENST00000560858 VASPP50552 380 aaPredicted RBP7.76□□□□□ -1.17
SPG11-223ENST00000560858 PDAP1Q13442 181 aaKnown RBP7.74□□□□□ -1.17
SPG11-223ENST00000560858 ILDR1Q86SU0 546 aaPredicted RBP7.72□□□□□ -1.17
SPG11-223ENST00000560858 ZNF710Q8N1W2 664 aa7.71□□□□□ -1.18
SPG11-223ENST00000560858 KRTAP3-3Q9BYR6 98 aa7.71□□□□□ -1.18
SPG11-223ENST00000560858 KRTAP3-2Q9BYR7 98 aa7.71□□□□□ -1.18
SPG11-223ENST00000560858 BOLA1Q9Y3E2 137 aa7.71□□□□□ -1.18
SPG11-223ENST00000560858 POTEB3A0JP26 581 aa7.7□□□□□ -1.18
SPG11-223ENST00000560858 DPY19L2Q6NUT2 758 aa7.7□□□□□ -1.18
SPG11-223ENST00000560858 POTEBQ6S5H4 581 aa7.7□□□□□ -1.18
SPG11-223ENST00000560858 CABP2Q9NPB3 220 aa7.69□□□□□ -1.18
SPG11-223ENST00000560858 CIZ1Q9ULV3 898 aaPredicted RBP7.68□□□□□ -1.18
SPG11-223ENST00000560858 DOK7Q18PE1 504 aa7.67□□□□□ -1.18
SPG11-223ENST00000560858 HOXB3P14651 431 aaPredicted RBP7.66□□□□□ -1.18
SPG11-223ENST00000560858 HOXB1P14653 301 aaPredicted RBP7.66□□□□□ -1.18
SPG11-223ENST00000560858 SPOCK2Q92563 424 aa7.66□□□□□ -1.18
SPG11-223ENST00000560858 ERBB3P21860 1342 aa7.66□□□□□ -1.18
SPG11-223ENST00000560858 RIMBP2O15034 1052 aa7.65□□□□□ -1.18
SPG11-223ENST00000560858 IFNLR1Q8IU57 520 aaPredicted RBP7.58□□□□□ -1.2
SPG11-223ENST00000560858 RNF166Q96A37 237 aaPredicted RBP7.58□□□□□ -1.2
SPG11-223ENST00000560858 VARS2Q5ST30 1063 aaKnown RBP7.57□□□□□ -1.2
SPG11-223ENST00000560858 TRIM41Q8WV44 630 aa7.57□□□□□ -1.2
SPG11-223ENST00000560858 ZSWIM6Q9HCJ5 1215 aa7.57□□□□□ -1.2
SPG11-223ENST00000560858 EFCAB3Q8N7B9 438 aa7.56□□□□□ -1.2
SPG11-223ENST00000560858 MYT1LQ9UL68 1186 aa7.55□□□□□ -1.2
SPG11-223ENST00000560858 ZNF687Q8N1G0 1237 aa7.54□□□□□ -1.2
SPG11-223ENST00000560858 SOX12O15370 315 aa7.52□□□□□ -1.21
SPG11-223ENST00000560858 MICALL2Q8IY33 904 aa7.52□□□□□ -1.21
SPG11-223ENST00000560858 PTGER2P43116 358 aa7.51□□□□□ -1.21
SPG11-223ENST00000560858 GPR153Q6NV75 609 aa7.5□□□□□ -1.21
SPG11-223ENST00000560858 TMEM92Q6UXU6 159 aa7.47□□□□□ -1.21
SPG11-223ENST00000560858 ANKRD13DQ6ZTN6 518 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms