RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 ZBTB7CA1YPR0 619 aa18.05■□□□□ 0.48
TRAF3-208ENST00000560371 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.03■□□□□ 0.48
TRAF3-208ENST00000560371 HAP1P54257 671 aaPredicted RBP18.01■□□□□ 0.47
TRAF3-208ENST00000560371 RGL3Q3MIN7 710 aa17.99■□□□□ 0.47
TRAF3-208ENST00000560371 CFDP1Q9UEE9 299 aaPredicted RBP17.99■□□□□ 0.47
TRAF3-208ENST00000560371 DCAF1Q9Y4B6 1507 aa17.99■□□□□ 0.47
TRAF3-208ENST00000560371 KIF27Q86VH2 1401 aa17.98■□□□□ 0.47
TRAF3-208ENST00000560371 FKBP8Q14318 412 aa17.97■□□□□ 0.47
TRAF3-208ENST00000560371 MRS2Q9HD23 443 aa17.96■□□□□ 0.47
TRAF3-208ENST00000560371 EEA1Q15075 1411 aa17.96■□□□□ 0.47
TRAF3-208ENST00000560371 EIF4G2P78344 907 aaKnown RBP eCLIP17.96■□□□□ 0.466e-8■■■■□ 21.2
TRAF3-208ENST00000560371 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.46
TRAF3-208ENST00000560371 GOLGA3Q08378 1498 aa17.95■□□□□ 0.46
TRAF3-208ENST00000560371 ANP32BQ92688 251 aaKnown RBP17.94■□□□□ 0.46
TRAF3-208ENST00000560371 ACIN1Q9UKV3 1341 aaKnown RBP17.94■□□□□ 0.46
TRAF3-208ENST00000560371 MYH16Q9H6N6 1097 aa17.91■□□□□ 0.46
TRAF3-208ENST00000560371 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
TRAF3-208ENST00000560371 HIRIP3Q9BW71 556 aaPredicted RBP17.91■□□□□ 0.46
TRAF3-208ENST00000560371 CCDC136Q96JN2 1154 aa17.9■□□□□ 0.46
TRAF3-208ENST00000560371 BAZ1AQ9NRL2 1556 aaPredicted RBP17.86■□□□□ 0.45
TRAF3-208ENST00000560371 CDCA8Q53HL2 280 aa17.85■□□□□ 0.45
TRAF3-208ENST00000560371 PPM1GO15355 546 aaPredicted RBP17.85■□□□□ 0.45
TRAF3-208ENST00000560371 CEP162Q5TB80 1403 aa17.83■□□□□ 0.45
TRAF3-208ENST00000560371 ARXQ96QS3 562 aa17.82■□□□□ 0.44
TRAF3-208ENST00000560371 LMOD2Q6P5Q4 547 aa17.82■□□□□ 0.44
TRAF3-208ENST00000560371 CFAP53Q96M91 514 aa17.81■□□□□ 0.44
TRAF3-208ENST00000560371 KNSTRNQ9Y448 316 aa17.8■□□□□ 0.44
TRAF3-208ENST00000560371 POGKQ9P215 609 aa17.79■□□□□ 0.44
TRAF3-208ENST00000560371 CEP164Q9UPV0 1460 aa17.79■□□□□ 0.44
TRAF3-208ENST00000560371 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
TRAF3-208ENST00000560371 EIF5BO60841 1220 aaKnown RBP17.76■□□□□ 0.43
TRAF3-208ENST00000560371 CARD11Q9BXL7 1154 aa17.74■□□□□ 0.43
TRAF3-208ENST00000560371 MLECQ14165 292 aa17.71■□□□□ 0.43
TRAF3-208ENST00000560371 CDK11BP21127 795 aaKnown RBP17.7■□□□□ 0.42
TRAF3-208ENST00000560371 FHAD1B1AJZ9 1412 aa17.69■□□□□ 0.42
TRAF3-208ENST00000560371 CCNB3Q8WWL7 1395 aa17.69■□□□□ 0.42
TRAF3-208ENST00000560371 HDGFP51858 240 aaKnown RBP17.68■□□□□ 0.42
TRAF3-208ENST00000560371 KANK1Q14678 1352 aa17.68■□□□□ 0.42
TRAF3-208ENST00000560371 NPHP1O15259 732 aa17.67■□□□□ 0.42
TRAF3-208ENST00000560371 CUX2O14529 1486 aa17.67■□□□□ 0.42
TRAF3-208ENST00000560371 NUDCQ9Y266 331 aa17.65■□□□□ 0.42
TRAF3-208ENST00000560371 TNIKQ9UKE5 1360 aa17.65■□□□□ 0.42
TRAF3-208ENST00000560371 CARMIL1Q5VZK9 1371 aa17.64■□□□□ 0.42
TRAF3-208ENST00000560371 LAS1LQ9Y4W2 734 aaKnown RBP17.64■□□□□ 0.42
TRAF3-208ENST00000560371 MAPK8IP3Q9UPT6 1336 aa17.64■□□□□ 0.41
TRAF3-208ENST00000560371 TULP1O00294 542 aaPredicted RBP17.64■□□□□ 0.41
TRAF3-208ENST00000560371 IRX6P78412 446 aaPredicted RBP17.64■□□□□ 0.41
TRAF3-208ENST00000560371 FTSJ3Q8IY81 847 aaKnown RBP17.62■□□□□ 0.41
TRAF3-208ENST00000560371 NEUROD2Q15784 382 aa17.62■□□□□ 0.41
TRAF3-208ENST00000560371 MIER1Q8N108 512 aa17.61■□□□□ 0.41
TRAF3-208ENST00000560371 TNNT2P45379 298 aaPredicted RBP17.61■□□□□ 0.41
TRAF3-208ENST00000560371 CECR2Q9BXF3 1484 aa17.59■□□□□ 0.41
TRAF3-208ENST00000560371 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
TRAF3-208ENST00000560371 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
TRAF3-208ENST00000560371 SENP3-EIF4A1A0A087X0R7 540 aa17.57■□□□□ 0.4
TRAF3-208ENST00000560371 GGT6Q6P531 493 aa17.57■□□□□ 0.4
TRAF3-208ENST00000560371 CARMIL2Q6F5E8 1435 aa17.57■□□□□ 0.4
TRAF3-208ENST00000560371 DCAF11Q8TEB1 546 aa17.56■□□□□ 0.4
TRAF3-208ENST00000560371 U2SURPO15042 1029 aaKnown RBP17.55■□□□□ 0.4
TRAF3-208ENST00000560371 SRPK2P78362 688 aaKnown RBP17.54■□□□□ 0.4
TRAF3-208ENST00000560371 PNNQ9H307 717 aaKnown RBP17.54■□□□□ 0.4
TRAF3-208ENST00000560371 CASC1Q6TDU7 716 aa17.53■□□□□ 0.4
TRAF3-208ENST00000560371 SOX12O15370 315 aa17.52■□□□□ 0.4
TRAF3-208ENST00000560371 BECN1Q14457 450 aa17.52■□□□□ 0.39
TRAF3-208ENST00000560371 MYO15BQ96JP2 1530 aa17.52■□□□□ 0.39
TRAF3-208ENST00000560371 NBR1Q14596 966 aa17.51■□□□□ 0.39
TRAF3-208ENST00000560371 TMF1P82094 1093 aa17.51■□□□□ 0.39
TRAF3-208ENST00000560371 CC2D1BQ5T0F9 858 aaKnown RBP17.5■□□□□ 0.39
TRAF3-208ENST00000560371 SIN3AQ96ST3 1273 aa17.5■□□□□ 0.39
TRAF3-208ENST00000560371 NCLP19338 710 aaKnown RBP17.5■□□□□ 0.39
TRAF3-208ENST00000560371 SAFB2Q14151 953 aaKnown RBP eCLIP17.49■□□□□ 0.39
TRAF3-208ENST00000560371 SOGA1O94964 1423 aa17.48■□□□□ 0.39
TRAF3-208ENST00000560371 NCBP3Q53F19 620 aaKnown RBP17.48■□□□□ 0.39
TRAF3-208ENST00000560371 GOLGA2Q08379 1002 aa17.46■□□□□ 0.38
TRAF3-208ENST00000560371 STK26Q9P289 416 aa17.46■□□□□ 0.38
TRAF3-208ENST00000560371 OS9Q13438 667 aaPredicted RBP17.45■□□□□ 0.38
TRAF3-208ENST00000560371 FRAT1Q92837 279 aaPredicted RBP17.44■□□□□ 0.38
TRAF3-208ENST00000560371 CHMP4BQ9H444 224 aaKnown RBP17.44■□□□□ 0.38
TRAF3-208ENST00000560371 ARHGAP35Q9NRY4 1499 aa17.43■□□□□ 0.38
TRAF3-208ENST00000560371 GOLGA6L22H0YM25 854 aa17.43■□□□□ 0.38
TRAF3-208ENST00000560371 ZRSR1Q15695 479 aaKnown RBP17.43■□□□□ 0.38
TRAF3-208ENST00000560371 EFCAB2Q5VUJ9 269 aa17.42■□□□□ 0.38
TRAF3-208ENST00000560371 TDRD9Q8NDG6 1382 aaKnown RBP17.42■□□□□ 0.38
TRAF3-208ENST00000560371 DDRGK1Q96HY6 314 aa17.41■□□□□ 0.38
TRAF3-208ENST00000560371 ABCC8Q09428 1581 aa17.41■□□□□ 0.38
TRAF3-208ENST00000560371 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
TRAF3-208ENST00000560371 PAK3O75914 559 aaPredicted RBP17.4■□□□□ 0.38
TRAF3-208ENST00000560371 MS4A1P11836 297 aa17.4■□□□□ 0.38
TRAF3-208ENST00000560371 MROH2BQ7Z745 1585 aa17.39■□□□□ 0.37
TRAF3-208ENST00000560371 SUPT16HQ9Y5B9 1047 aaKnown RBP17.39■□□□□ 0.37
TRAF3-208ENST00000560371 MORC1Q86VD1 984 aa17.38■□□□□ 0.37
TRAF3-208ENST00000560371 RTF1Q92541 710 aaKnown RBP17.37■□□□□ 0.37
TRAF3-208ENST00000560371 FGD1P98174 961 aa17.37■□□□□ 0.37
TRAF3-208ENST00000560371 PKD2Q13563 968 aa17.36■□□□□ 0.37
TRAF3-208ENST00000560371 WIZO95785 1651 aa17.36■□□□□ 0.37
TRAF3-208ENST00000560371 HDGFL2Q7Z4V5 671 aaPredicted RBP17.36■□□□□ 0.37
TRAF3-208ENST00000560371 FMN1Q68DA7 1419 aa17.36■□□□□ 0.37
TRAF3-208ENST00000560371 KCNJ4P48050 445 aa17.35■□□□□ 0.37
TRAF3-208ENST00000560371 TAOK2Q9UL54 1235 aa17.34■□□□□ 0.37
TRAF3-208ENST00000560371 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms