RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PAK3O75914 559 aaPredicted RBP5.64□□□□□ -1.51
USP3-209ENST00000558925 C7P10643 843 aa5.64□□□□□ -1.51
USP3-209ENST00000558925 SLC39A7Q92504 469 aa5.64□□□□□ -1.51
USP3-209ENST00000558925 FAM163AQ96GL9 167 aaPredicted RBP5.64□□□□□ -1.51
USP3-209ENST00000558925 ATN1P54259 1190 aaPredicted RBP5.63□□□□□ -1.51
USP3-209ENST00000558925 STAG3Q9UJ98 1225 aa5.63□□□□□ -1.51
USP3-209ENST00000558925 TRPC6Q9Y210 931 aa5.62□□□□□ -1.51
USP3-209ENST00000558925 SPDYE4A6NLX3 237 aa5.59□□□□□ -1.51
USP3-209ENST00000558925 MAMSTRQ6ZN01 415 aa5.59□□□□□ -1.51
USP3-209ENST00000558925 NPM1P06748 294 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP3-209ENST00000558925 BMP2KQ9NSY1 1161 aaPredicted RBP5.58□□□□□ -1.52
USP3-209ENST00000558925 CCDC61Q9Y6R9 512 aa5.57□□□□□ -1.52
USP3-209ENST00000558925 CSRNP3Q8WYN3 585 aa5.56□□□□□ -1.52
USP3-209ENST00000558925 TSPYL2Q9H2G4 693 aaPredicted RBP5.56□□□□□ -1.52
USP3-209ENST00000558925 SCUBE2Q9NQ36 999 aa5.56□□□□□ -1.52
USP3-209ENST00000558925 COLQQ9Y215 455 aaPredicted RBP5.56□□□□□ -1.52
USP3-209ENST00000558925 CDAN1Q8IWY9 1227 aa5.55□□□□□ -1.52
USP3-209ENST00000558925 KIF12Q96FN5 646 aa5.55□□□□□ -1.52
USP3-209ENST00000558925 MAP3K13O43283 966 aa5.51□□□□□ -1.53
USP3-209ENST00000558925 TTLL13PA6NNM8 815 aa5.49□□□□□ -1.53
USP3-209ENST00000558925 ST18O60284 1047 aa5.48□□□□□ -1.53
USP3-209ENST00000558925 TIE1P35590 1138 aa5.48□□□□□ -1.53
USP3-209ENST00000558925 RASEFQ8IZ41 740 aa5.47□□□□□ -1.53
USP3-209ENST00000558925 MMRN1Q13201 1228 aa5.46□□□□□ -1.54
USP3-209ENST00000558925 PROM2Q8N271 834 aa5.45□□□□□ -1.54
USP3-209ENST00000558925 TRIM35Q9UPQ4 493 aa5.45□□□□□ -1.54
USP3-209ENST00000558925 SEC24BO95487 1268 aa5.44□□□□□ -1.54
USP3-209ENST00000558925 SPNS2Q8IVW8 549 aa5.44□□□□□ -1.54
USP3-209ENST00000558925 SLAIN1Q8ND83 568 aa5.43□□□□□ -1.54
USP3-209ENST00000558925 IER5LQ5T953 404 aa5.4□□□□□ -1.54
USP3-209ENST00000558925 IFNL1Q8IU54 200 aa5.38□□□□□ -1.55
USP3-209ENST00000558925 IRX5P78411 483 aaPredicted RBP5.37□□□□□ -1.55
USP3-209ENST00000558925 MARVELD3Q96A59 401 aa5.37□□□□□ -1.55
USP3-209ENST00000558925 PCDHB13Q9Y5F0 798 aa5.37□□□□□ -1.55
USP3-209ENST00000558925 POTEB3A0JP26 581 aa5.35□□□□□ -1.55
USP3-209ENST00000558925 POTEBQ6S5H4 581 aa5.35□□□□□ -1.55
USP3-209ENST00000558925 NUBP1P53384 320 aa5.34□□□□□ -1.55
USP3-209ENST00000558925 MIER1Q8N108 512 aa5.34□□□□□ -1.55
USP3-209ENST00000558925 SGIP1Q9BQI5 828 aa5.34□□□□□ -1.55
USP3-209ENST00000558925 TMEM106CQ9BVX2 250 aa5.34□□□□□ -1.55
USP3-209ENST00000558925 PLCG2P16885 1265 aa5.33□□□□□ -1.56
USP3-209ENST00000558925 TMEM121BQ9BXQ6 578 aaPredicted RBP5.33□□□□□ -1.56
USP3-209ENST00000558925 KRTAP3-3Q9BYR6 98 aa5.33□□□□□ -1.56
USP3-209ENST00000558925 KRTAP3-2Q9BYR7 98 aa5.33□□□□□ -1.56
USP3-209ENST00000558925 EHMT2Q96KQ7 1210 aa5.29□□□□□ -1.56
USP3-209ENST00000558925 OCEL1Q9H607 264 aa5.28□□□□□ -1.56
USP3-209ENST00000558925 PDCD7Q8N8D1 485 aaKnown RBP5.26□□□□□ -1.57
USP3-209ENST00000558925 HS3ST6Q96QI5 342 aa5.26□□□□□ -1.57
USP3-209ENST00000558925 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.26□□□□□ -1.57
USP3-209ENST00000558925 PLEKHG5O94827 1062 aa5.25□□□□□ -1.57
USP3-209ENST00000558925 EMP3P54852 163 aa5.25□□□□□ -1.57
USP3-209ENST00000558925 FAM205CA6NFA0 338 aa5.24□□□□□ -1.57
USP3-209ENST00000558925 SNPHO15079 494 aa5.24□□□□□ -1.57
USP3-209ENST00000558925 PLCD3Q8N3E9 789 aa5.24□□□□□ -1.57
USP3-209ENST00000558925 PCDHB8Q9UN66 801 aa5.24□□□□□ -1.57
USP3-209ENST00000558925 PYGBP11216 843 aa5.22□□□□□ -1.57
USP3-209ENST00000558925 FAM212AQ96EL1 285 aa5.22□□□□□ -1.57
USP3-209ENST00000558925 HOXB3P14651 431 aaPredicted RBP5.17□□□□□ -1.58
USP3-209ENST00000558925 C3orf67Q6ZVT6 689 aa5.17□□□□□ -1.58
USP3-209ENST00000558925 DPY19L2Q6NUT2 758 aa5.16□□□□□ -1.58
USP3-209ENST00000558925 ZBTB47Q9UFB7 747 aaPredicted RBP5.16□□□□□ -1.58
USP3-209ENST00000558925 DCAF8Q5TAQ9 597 aa5.15□□□□□ -1.59
USP3-209ENST00000558925 ILDR1Q86SU0 546 aaPredicted RBP5.15□□□□□ -1.59
USP3-209ENST00000558925 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.13□□□□□ -1.592e-7■□□□□ 10.5
USP3-209ENST00000558925 RNF166Q96A37 237 aaPredicted RBP5.12□□□□□ -1.59
USP3-209ENST00000558925 L3MBTL3Q96JM7 780 aaPredicted RBP5.12□□□□□ -1.59
USP3-209ENST00000558925 HOXB1P14653 301 aaPredicted RBP5.11□□□□□ -1.59
USP3-209ENST00000558925 MKRN3Q13064 507 aaKnown RBP5.11□□□□□ -1.59
USP3-209ENST00000558925 ERBB3P21860 1342 aa5.08□□□□□ -1.6
USP3-209ENST00000558925 PSEN1P49768 467 aa5.08□□□□□ -1.6
USP3-209ENST00000558925 VARS2Q5ST30 1063 aaKnown RBP5.08□□□□□ -1.6
USP3-209ENST00000558925 GOLGA2Q08379 1002 aa5.07□□□□□ -1.6
USP3-209ENST00000558925 ZNF467Q7Z7K2 595 aaPredicted RBP5.07□□□□□ -1.6
USP3-209ENST00000558925 MYT1LQ9UL68 1186 aa5.07□□□□□ -1.6
USP3-209ENST00000558925 BOLA1Q9Y3E2 137 aa5.07□□□□□ -1.6
USP3-209ENST00000558925 TMEM92Q6UXU6 159 aa5.05□□□□□ -1.6
USP3-209ENST00000558925 ZNF710Q8N1W2 664 aa5.04□□□□□ -1.6
USP3-209ENST00000558925 CHRM1P11229 460 aaPredicted RBP5.03□□□□□ -1.6
USP3-209ENST00000558925 CABP2Q9NPB3 220 aa5.03□□□□□ -1.6
USP3-209ENST00000558925 DOK7Q18PE1 504 aa5.02□□□□□ -1.61
USP3-209ENST00000558925 ZNF687Q8N1G0 1237 aa5.02□□□□□ -1.61
USP3-209ENST00000558925 PDAP1Q13442 181 aaKnown RBP5.01□□□□□ -1.61
USP3-209ENST00000558925 FKBP8Q14318 412 aa5.01□□□□□ -1.61
USP3-209ENST00000558925 GPR153Q6NV75 609 aa5.01□□□□□ -1.61
USP3-209ENST00000558925 GSE1Q14687 1217 aa5□□□□□ -1.61
USP3-209ENST00000558925 ANKRD13DQ6ZTN6 518 aa4.97□□□□□ -1.61
USP3-209ENST00000558925 KHSRPQ92945 711 aaKnown RBP eCLIP4.97□□□□□ -1.61
USP3-209ENST00000558925 G3V3G9 751 aa4.96□□□□□ -1.62
USP3-209ENST00000558925 ARSIQ5FYB1 569 aa4.96□□□□□ -1.62
USP3-209ENST00000558925 POTEEQ6S8J3 1075 aa4.96□□□□□ -1.62
USP3-209ENST00000558925 MICALL2Q8IY33 904 aa4.96□□□□□ -1.62
USP3-209ENST00000558925 RIMBP2O15034 1052 aa4.95□□□□□ -1.62
USP3-209ENST00000558925 VASPP50552 380 aaPredicted RBP4.95□□□□□ -1.62
USP3-209ENST00000558925 KLHL34Q8N239 644 aa4.95□□□□□ -1.62
USP3-209ENST00000558925 EFCAB3Q8N7B9 438 aa4.95□□□□□ -1.62
USP3-209ENST00000558925 ZSWIM6Q9HCJ5 1215 aa4.95□□□□□ -1.62
USP3-209ENST00000558925 PTGER2P43116 358 aa4.94□□□□□ -1.62
USP3-209ENST00000558925 LSM11P83369 360 aaKnown RBP eCLIP4.94□□□□□ -1.62
USP3-209ENST00000558925 MS4A4AQ96JQ5 239 aa4.94□□□□□ -1.62
USP3-209ENST00000558925 PLA2G2EQ9NZK7 142 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms