RNA–Protein interactions for RNA: ENST00000558911.1

LRRC28-212, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-212ENST00000558911 PLSCR2Q9NRY7 297 aa9.67□□□□□ -0.86
LRRC28-212ENST00000558911 METRNQ9UJH8 293 aa9.65□□□□□ -0.86
LRRC28-212ENST00000558911 ATMINO43313 823 aaPredicted RBP9.64□□□□□ -0.87
LRRC28-212ENST00000558911 ASTLQ6HA08 431 aaPredicted RBP9.62□□□□□ -0.87
LRRC28-212ENST00000558911 CCDC61Q9Y6R9 512 aa9.62□□□□□ -0.87
LRRC28-212ENST00000558911 PLCD3Q8N3E9 789 aa9.61□□□□□ -0.87
LRRC28-212ENST00000558911 SLC39A7Q92504 469 aa9.61□□□□□ -0.87
LRRC28-212ENST00000558911 ATN1P54259 1190 aaPredicted RBP9.59□□□□□ -0.87
LRRC28-212ENST00000558911 C7P10643 843 aa9.58□□□□□ -0.88
LRRC28-212ENST00000558911 RASEFQ8IZ41 740 aa9.58□□□□□ -0.88
LRRC28-212ENST00000558911 KIF12Q96FN5 646 aa9.58□□□□□ -0.88
LRRC28-212ENST00000558911 TRPC6Q9Y210 931 aa9.58□□□□□ -0.88
LRRC28-212ENST00000558911 MAP3K13O43283 966 aa9.56□□□□□ -0.88
LRRC28-212ENST00000558911 POTEJP0CG39 1038 aa9.53□□□□□ -0.88
LRRC28-212ENST00000558911 BMP2KQ9NSY1 1161 aaPredicted RBP9.53□□□□□ -0.88
LRRC28-212ENST00000558911 POTEMA6NI47 508 aa9.52□□□□□ -0.89
LRRC28-212ENST00000558911 FKBP8Q14318 412 aa9.5□□□□□ -0.89
LRRC28-212ENST00000558911 POTEGQ6S5H5 508 aa9.49□□□□□ -0.89
LRRC28-212ENST00000558911 MAMSTRQ6ZN01 415 aa9.48□□□□□ -0.89
LRRC28-212ENST00000558911 SCUBE2Q9NQ36 999 aa9.48□□□□□ -0.89
LRRC28-212ENST00000558911 FAM163AQ96GL9 167 aaPredicted RBP9.47□□□□□ -0.89
LRRC28-212ENST00000558911 PCDHB13Q9Y5F0 798 aa9.47□□□□□ -0.89
LRRC28-212ENST00000558911 SEC24BO95487 1268 aa9.46□□□□□ -0.9
LRRC28-212ENST00000558911 TIE1P35590 1138 aa9.46□□□□□ -0.9
LRRC28-212ENST00000558911 POTEFA5A3E0 1075 aa9.45□□□□□ -0.9
LRRC28-212ENST00000558911 ZBTB47Q9UFB7 747 aaPredicted RBP9.45□□□□□ -0.9
LRRC28-212ENST00000558911 TTLL13PA6NNM8 815 aa9.44□□□□□ -0.9
LRRC28-212ENST00000558911 NUBP1P53384 320 aa9.42□□□□□ -0.9
LRRC28-212ENST00000558911 TRIM35Q9UPQ4 493 aa9.42□□□□□ -0.9
LRRC28-212ENST00000558911 COLQQ9Y215 455 aaPredicted RBP9.41□□□□□ -0.9
LRRC28-212ENST00000558911 FAM212AQ96EL1 285 aa9.4□□□□□ -0.9
LRRC28-212ENST00000558911 IFNL1Q8IU54 200 aa9.38□□□□□ -0.91
LRRC28-212ENST00000558911 DCAF8Q5TAQ9 597 aa9.37□□□□□ -0.91
LRRC28-212ENST00000558911 TMEM106CQ9BVX2 250 aa9.36□□□□□ -0.91
LRRC28-212ENST00000558911 SGIP1Q9BQI5 828 aa9.35□□□□□ -0.91
LRRC28-212ENST00000558911 PYGBP11216 843 aa9.33□□□□□ -0.92
LRRC28-212ENST00000558911 LCE2DQ5TA82 110 aaPredicted RBP9.33□□□□□ -0.92
LRRC28-212ENST00000558911 PLCG2P16885 1265 aa9.3□□□□□ -0.92
LRRC28-212ENST00000558911 IER5LQ5T953 404 aa9.29□□□□□ -0.92
LRRC28-212ENST00000558911 KLHL34Q8N239 644 aa9.29□□□□□ -0.92
LRRC28-212ENST00000558911 SLAIN1Q8ND83 568 aa9.28□□□□□ -0.92
LRRC28-212ENST00000558911 FBXO3Q9UK99 471 aa9.27□□□□□ -0.93
LRRC28-212ENST00000558911 PCDHB8Q9UN66 801 aa9.27□□□□□ -0.93
LRRC28-212ENST00000558911 PCDH10Q9P2E7 1040 aa9.26□□□□□ -0.93
LRRC28-212ENST00000558911 IRX5P78411 483 aaPredicted RBP9.2□□□□□ -0.94
LRRC28-212ENST00000558911 CDAN1Q8IWY9 1227 aa9.18□□□□□ -0.94
LRRC28-212ENST00000558911 OCEL1Q9H607 264 aa9.18□□□□□ -0.94
LRRC28-212ENST00000558911 ST18O60284 1047 aa9.17□□□□□ -0.94
LRRC28-212ENST00000558911 VASPP50552 380 aaPredicted RBP9.17□□□□□ -0.94
LRRC28-212ENST00000558911 GOLGA2Q08379 1002 aa9.16□□□□□ -0.94
LRRC28-212ENST00000558911 GSE1Q14687 1217 aa9.15□□□□□ -0.94
LRRC28-212ENST00000558911 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.14□□□□□ -0.95
LRRC28-212ENST00000558911 MKRN3Q13064 507 aaKnown RBP9.12□□□□□ -0.95
LRRC28-212ENST00000558911 ZNF467Q7Z7K2 595 aaPredicted RBP9.11□□□□□ -0.95
LRRC28-212ENST00000558911 CIZ1Q9ULV3 898 aaPredicted RBP9.09□□□□□ -0.95
LRRC28-212ENST00000558911 PSEN1P49768 467 aa9.08□□□□□ -0.96
LRRC28-212ENST00000558911 C3orf67Q6ZVT6 689 aa9.08□□□□□ -0.96
LRRC28-212ENST00000558911 MARVELD3Q96A59 401 aa9.08□□□□□ -0.96
LRRC28-212ENST00000558911 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.06□□□□□ -0.96
LRRC28-212ENST00000558911 SNPHO15079 494 aa9.05□□□□□ -0.96
LRRC28-212ENST00000558911 PDCD7Q8N8D1 485 aaKnown RBP9.05□□□□□ -0.96
LRRC28-212ENST00000558911 L3MBTL3Q96JM7 780 aaPredicted RBP9.03□□□□□ -0.96
LRRC28-212ENST00000558911 CHRM1P11229 460 aaPredicted RBP9.01□□□□□ -0.97
LRRC28-212ENST00000558911 IFNLR1Q8IU57 520 aaPredicted RBP9.01□□□□□ -0.97
LRRC28-212ENST00000558911 SPOCK2Q92563 424 aa9.01□□□□□ -0.97
LRRC28-212ENST00000558911 CABP2Q9NPB3 220 aa9.01□□□□□ -0.97
LRRC28-212ENST00000558911 PDAP1Q13442 181 aaKnown RBP9□□□□□ -0.97
LRRC28-212ENST00000558911 DPY19L2Q6NUT2 758 aa8.99□□□□□ -0.97
LRRC28-212ENST00000558911 TMEM121BQ9BXQ6 578 aaPredicted RBP8.99□□□□□ -0.97
LRRC28-212ENST00000558911 G3V3G9 751 aa8.97□□□□□ -0.97
LRRC28-212ENST00000558911 EMP3P54852 163 aa8.96□□□□□ -0.98
LRRC28-212ENST00000558911 FAM205CA6NFA0 338 aa8.93□□□□□ -0.98
LRRC28-212ENST00000558911 SPNS2Q8IVW8 549 aa8.93□□□□□ -0.98
LRRC28-212ENST00000558911 MMRN1Q13201 1228 aa8.92□□□□□ -0.98
LRRC28-212ENST00000558911 BOLA1Q9Y3E2 137 aa8.91□□□□□ -0.98
LRRC28-212ENST00000558911 HS3ST6Q96QI5 342 aa8.89□□□□□ -0.99
LRRC28-212ENST00000558911 POTEB3A0JP26 581 aa8.86□□□□□ -0.99
LRRC28-212ENST00000558911 POTEBQ6S5H4 581 aa8.86□□□□□ -0.99
LRRC28-212ENST00000558911 EFCAB3Q8N7B9 438 aa8.86□□□□□ -0.99
LRRC28-212ENST00000558911 ZNF710Q8N1W2 664 aa8.85□□□□□ -0.99
LRRC28-212ENST00000558911 ILDR1Q86SU0 546 aaPredicted RBP8.84□□□□□ -0.99
LRRC28-212ENST00000558911 HOXB3P14651 431 aaPredicted RBP8.8□□□□□ -1
LRRC28-212ENST00000558911 KRTAP3-3Q9BYR6 98 aa8.8□□□□□ -1
LRRC28-212ENST00000558911 KRTAP3-2Q9BYR7 98 aa8.8□□□□□ -1
LRRC28-212ENST00000558911 ERBB3P21860 1342 aa8.79□□□□□ -1
LRRC28-212ENST00000558911 TRIM41Q8WV44 630 aa8.78□□□□□ -1
LRRC28-212ENST00000558911 DOK7Q18PE1 504 aa8.77□□□□□ -1.01
LRRC28-212ENST00000558911 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.75□□□□□ -1.01
LRRC28-212ENST00000558911 HOXB1P14653 301 aaPredicted RBP8.75□□□□□ -1.01
LRRC28-212ENST00000558911 ZFP91Q96JP5 570 aaPredicted RBP8.75□□□□□ -1.01
LRRC28-212ENST00000558911 RIOK3O14730 519 aaKnown RBP8.74□□□□□ -1.01
LRRC28-212ENST00000558911 RIMBP2O15034 1052 aa8.74□□□□□ -1.01
LRRC28-212ENST00000558911 MICALL2Q8IY33 904 aa8.74□□□□□ -1.01
LRRC28-212ENST00000558911 PHF8Q9UPP1 1060 aa8.73□□□□□ -1.01
LRRC28-212ENST00000558911 VARS2Q5ST30 1063 aaKnown RBP8.72□□□□□ -1.01
LRRC28-212ENST00000558911 TMEM92Q6UXU6 159 aa8.72□□□□□ -1.01
LRRC28-212ENST00000558911 RNF25Q96BH1 459 aaPredicted RBP8.72□□□□□ -1.01
LRRC28-212ENST00000558911 SOX12O15370 315 aa8.7□□□□□ -1.02
LRRC28-212ENST00000558911 VGFO15240 615 aaPredicted RBP8.69□□□□□ -1.02
LRRC28-212ENST00000558911 MS4A4AQ96JQ5 239 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms