RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 RGL2O15211 777 aa9.12□□□□□ -0.95
SPG11-211ENST00000558561 PYGBP11216 843 aa9.11□□□□□ -0.95
SPG11-211ENST00000558561 CD44P16070 742 aaKnown RBP9.11□□□□□ -0.95
SPG11-211ENST00000558561 TRIM41Q8WV44 630 aa9.11□□□□□ -0.95
SPG11-211ENST00000558561 C19orf67A6NJJ6 358 aa9.09□□□□□ -0.95
SPG11-211ENST00000558561 PAK3O75914 559 aaPredicted RBP9.09□□□□□ -0.95
SPG11-211ENST00000558561 DCAF8L2P0C7V8 631 aa9.09□□□□□ -0.95
SPG11-211ENST00000558561 ZRANB1Q9UGI0 708 aa9.09□□□□□ -0.95
SPG11-211ENST00000558561 CCDC61Q9Y6R9 512 aa9.09□□□□□ -0.95
SPG11-211ENST00000558561 CHRM1P11229 460 aaPredicted RBP9.08□□□□□ -0.96
SPG11-211ENST00000558561 RNF25Q96BH1 459 aaPredicted RBP9.07□□□□□ -0.96
SPG11-211ENST00000558561 HAX1O00165 279 aa9.06□□□□□ -0.96
SPG11-211ENST00000558561 ABCC9O60706 1549 aa9.05□□□□□ -0.96
SPG11-211ENST00000558561 EVX2Q03828 476 aa9.04□□□□□ -0.96
SPG11-211ENST00000558561 SP7Q8TDD2 431 aaPredicted RBP9.03□□□□□ -0.96
SPG11-211ENST00000558561 PHF12Q96QT6 1004 aa9.03□□□□□ -0.96
SPG11-211ENST00000558561 RIOK3O14730 519 aaKnown RBP9.01□□□□□ -0.97
SPG11-211ENST00000558561 KIF12Q96FN5 646 aa9.01□□□□□ -0.97
SPG11-211ENST00000558561 MAP3K13O43283 966 aa9□□□□□ -0.97
SPG11-211ENST00000558561 PCDHB8Q9UN66 801 aa9□□□□□ -0.97
SPG11-211ENST00000558561 PCDHB13Q9Y5F0 798 aa9□□□□□ -0.97
SPG11-211ENST00000558561 CCDC180Q9P1Z9 1646 aa9□□□□□ -0.97
SPG11-211ENST00000558561 ZNF579Q8NAF0 562 aaKnown RBP8.98□□□□□ -0.97
SPG11-211ENST00000558561 IFNL1Q8IU54 200 aa8.96□□□□□ -0.98
SPG11-211ENST00000558561 CHGAP10645 457 aaKnown RBP8.95□□□□□ -0.98
SPG11-211ENST00000558561 VGFO15240 615 aaPredicted RBP8.94□□□□□ -0.98
SPG11-211ENST00000558561 ZNF467Q7Z7K2 595 aaPredicted RBP8.94□□□□□ -0.98
SPG11-211ENST00000558561 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.92□□□□□ -0.98
SPG11-211ENST00000558561 ZFP91Q96JP5 570 aaPredicted RBP8.92□□□□□ -0.98
SPG11-211ENST00000558561 SGIP1Q9BQI5 828 aa8.92□□□□□ -0.98
SPG11-211ENST00000558561 MS4A3Q96HJ5 214 aa8.91□□□□□ -0.98
SPG11-211ENST00000558561 TAOK2Q9UL54 1235 aa8.91□□□□□ -0.98
SPG11-211ENST00000558561 STK25O00506 426 aa8.89□□□□□ -0.99
SPG11-211ENST00000558561 PDAP1Q13442 181 aaKnown RBP8.89□□□□□ -0.99
SPG11-211ENST00000558561 HS6ST3Q8IZP7 471 aa8.89□□□□□ -0.99
SPG11-211ENST00000558561 PSEN1P49768 467 aa8.88□□□□□ -0.99
SPG11-211ENST00000558561 TRPC6Q9Y210 931 aa8.88□□□□□ -0.99
SPG11-211ENST00000558561 GALR2O43603 387 aaPredicted RBP8.87□□□□□ -0.99
SPG11-211ENST00000558561 BCL11BQ9C0K0 894 aaPredicted RBP8.87□□□□□ -0.99
SPG11-211ENST00000558561 BBXQ8WY36 941 aaPredicted RBP8.86□□□□□ -0.99
SPG11-211ENST00000558561 STK24Q9Y6E0 443 aa8.86□□□□□ -0.99
SPG11-211ENST00000558561 GABBR2O75899 941 aa8.83□□□□□ -1
SPG11-211ENST00000558561 NKX1-1Q15270 411 aaPredicted RBP8.81□□□□□ -1
SPG11-211ENST00000558561 TMEM106CQ9BVX2 250 aa8.81□□□□□ -1
SPG11-211ENST00000558561 CLCN6P51797 869 aa8.8□□□□□ -1
SPG11-211ENST00000558561 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.8□□□□□ -1
SPG11-211ENST00000558561 DNAJC5Q9H3Z4 198 aa8.79□□□□□ -1
SPG11-211ENST00000558561 PLCB2Q00722 1185 aa8.78□□□□□ -1
SPG11-211ENST00000558561 CABP2Q9NPB3 220 aa8.78□□□□□ -1
SPG11-211ENST00000558561 BMP2KQ9NSY1 1161 aaPredicted RBP8.78□□□□□ -1
SPG11-211ENST00000558561 TIE1P35590 1138 aa8.77□□□□□ -1.01
SPG11-211ENST00000558561 PAXIP1Q6ZW49 1069 aaPredicted RBP8.77□□□□□ -1.01
SPG11-211ENST00000558561 TTLL13PA6NNM8 815 aa8.76□□□□□ -1.01
SPG11-211ENST00000558561 CFAP44Q96MT7 982 aa8.76□□□□□ -1.01
SPG11-211ENST00000558561 EFCAB3Q8N7B9 438 aa8.75□□□□□ -1.01
SPG11-211ENST00000558561 SPRYD3Q8NCJ5 442 aa8.74□□□□□ -1.01
SPG11-211ENST00000558561 GTPBP6O43824 516 aaPredicted RBP8.72□□□□□ -1.01
SPG11-211ENST00000558561 ATN1P54259 1190 aaPredicted RBP8.72□□□□□ -1.01
SPG11-211ENST00000558561 ATMINO43313 823 aaPredicted RBP8.71□□□□□ -1.02
SPG11-211ENST00000558561 GOLGA2Q08379 1002 aa8.7□□□□□ -1.02
SPG11-211ENST00000558561 MFRPQ9BY79 579 aa8.7□□□□□ -1.02
SPG11-211ENST00000558561 TRIM35Q9UPQ4 493 aa8.7□□□□□ -1.02
SPG11-211ENST00000558561 ASTLQ6HA08 431 aaPredicted RBP8.69□□□□□ -1.02
SPG11-211ENST00000558561 DCBLD2Q96PD2 775 aa8.69□□□□□ -1.02
SPG11-211ENST00000558561 SOX12O15370 315 aa8.68□□□□□ -1.02
SPG11-211ENST00000558561 SLC24A1O60721 1099 aa8.68□□□□□ -1.02
SPG11-211ENST00000558561 PHF8Q9UPP1 1060 aa8.68□□□□□ -1.02
SPG11-211ENST00000558561 MKRN3Q13064 507 aaKnown RBP8.67□□□□□ -1.02
SPG11-211ENST00000558561 PELP1Q8IZL8 1130 aaKnown RBP8.67□□□□□ -1.02
SPG11-211ENST00000558561 POTEIP0CG38 1075 aa8.66□□□□□ -1.02
SPG11-211ENST00000558561 HAP1P54257 671 aaPredicted RBP8.66□□□□□ -1.02
SPG11-211ENST00000558561 FBXO22Q8NEZ5 403 aa8.65□□□□□ -1.02
SPG11-211ENST00000558561 NLRP6P59044 892 aa8.64□□□□□ -1.03
SPG11-211ENST00000558561 TSHZ2Q9NRE2 1034 aa8.64□□□□□ -1.03
SPG11-211ENST00000558561 MS4A4AQ96JQ5 239 aa8.63□□□□□ -1.03
SPG11-211ENST00000558561 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.63□□□□□ -1.031e-7■■■□□ 15.1
SPG11-211ENST00000558561 PPP1R37O75864 691 aa8.62□□□□□ -1.03
SPG11-211ENST00000558561 RYDENQ9NUL5 291 aaKnown RBP8.62□□□□□ -1.03
SPG11-211ENST00000558561 DPY19L2Q6NUT2 758 aa8.59□□□□□ -1.03
SPG11-211ENST00000558561 ILDR1Q86SU0 546 aaPredicted RBP8.59□□□□□ -1.03
SPG11-211ENST00000558561 IRX5P78411 483 aaPredicted RBP8.58□□□□□ -1.04
SPG11-211ENST00000558561 IER5LQ5T953 404 aa8.58□□□□□ -1.04
SPG11-211ENST00000558561 PDCD7Q8N8D1 485 aaKnown RBP8.57□□□□□ -1.04
SPG11-211ENST00000558561 COLQQ9Y215 455 aaPredicted RBP8.57□□□□□ -1.04
SPG11-211ENST00000558561 OCEL1Q9H607 264 aa8.56□□□□□ -1.04
SPG11-211ENST00000558561 SLC39A7Q92504 469 aa8.55□□□□□ -1.04
SPG11-211ENST00000558561 POTEFA5A3E0 1075 aa8.54□□□□□ -1.04
SPG11-211ENST00000558561 SEC24BO95487 1268 aa8.54□□□□□ -1.04
SPG11-211ENST00000558561 C7P10643 843 aa8.54□□□□□ -1.04
SPG11-211ENST00000558561 METRNQ9UJH8 293 aa8.54□□□□□ -1.04
SPG11-211ENST00000558561 RB1CC1Q8TDY2 1594 aa8.53□□□□□ -1.04
SPG11-211ENST00000558561 PLCG2P16885 1265 aa8.53□□□□□ -1.04
SPG11-211ENST00000558561 KDM2AQ9Y2K7 1162 aa8.53□□□□□ -1.04
SPG11-211ENST00000558561 CADPS2Q86UW7 1296 aa8.52□□□□□ -1.05
SPG11-211ENST00000558561 NACADO15069 1562 aa8.51□□□□□ -1.05
SPG11-211ENST00000558561 VSIG10Q8N0Z9 540 aa8.5□□□□□ -1.05
SPG11-211ENST00000558561 ZCCHC6Q5VYS8 1495 aaKnown RBP8.48□□□□□ -1.05
SPG11-211ENST00000558561 UNC13AQ9UPW8 1703 aa8.46□□□□□ -1.05
SPG11-211ENST00000558561 LHX8Q68G74 356 aa8.46□□□□□ -1.06
SPG11-211ENST00000558561 MICALL2Q8IY33 904 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms