RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 ZBTB47Q9UFB7 747 aaPredicted RBP11.03□□□□□ -0.64
SCFD1-223ENST00000557076 CCDC61Q9Y6R9 512 aa11.02□□□□□ -0.65
SCFD1-223ENST00000557076 MS4A3Q96HJ5 214 aa11.01□□□□□ -0.65
SCFD1-223ENST00000557076 ASTLQ6HA08 431 aaPredicted RBP10.95□□□□□ -0.66
SCFD1-223ENST00000557076 RASEFQ8IZ41 740 aa10.95□□□□□ -0.66
SCFD1-223ENST00000557076 KIF12Q96FN5 646 aa10.95□□□□□ -0.66
SCFD1-223ENST00000557076 FBXO3Q9UK99 471 aa10.94□□□□□ -0.66
SCFD1-223ENST00000557076 ATMINO43313 823 aaPredicted RBP10.91□□□□□ -0.66
SCFD1-223ENST00000557076 PELP1Q8IZL8 1130 aaKnown RBP10.89□□□□□ -0.67
SCFD1-223ENST00000557076 SLC39A7Q92504 469 aa10.89□□□□□ -0.67
SCFD1-223ENST00000557076 MAP3K13O43283 966 aa10.88□□□□□ -0.67
SCFD1-223ENST00000557076 NUBP1P53384 320 aa10.88□□□□□ -0.67
SCFD1-223ENST00000557076 C7P10643 843 aa10.87□□□□□ -0.67
SCFD1-223ENST00000557076 FAM212AQ96EL1 285 aa10.86□□□□□ -0.67
SCFD1-223ENST00000557076 METRNQ9UJH8 293 aa10.86□□□□□ -0.67
SCFD1-223ENST00000557076 SGIP1Q9BQI5 828 aa10.85□□□□□ -0.67
SCFD1-223ENST00000557076 TIE1P35590 1138 aa10.84□□□□□ -0.67
SCFD1-223ENST00000557076 ATN1P54259 1190 aaPredicted RBP10.83□□□□□ -0.68
SCFD1-223ENST00000557076 POTEB2H3BUK9 544 aa10.82□□□□□ -0.68
SCFD1-223ENST00000557076 CCDC180Q9P1Z9 1646 aa10.82□□□□□ -0.68
SCFD1-223ENST00000557076 BMP2KQ9NSY1 1161 aaPredicted RBP10.81□□□□□ -0.68
SCFD1-223ENST00000557076 OTUD5Q96G74 571 aa10.8□□□□□ -0.68
SCFD1-223ENST00000557076 PCDHB13Q9Y5F0 798 aa10.79□□□□□ -0.68
SCFD1-223ENST00000557076 TRPC6Q9Y210 931 aa10.78□□□□□ -0.68
SCFD1-223ENST00000557076 VASPP50552 380 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-223ENST00000557076 TTLL13PA6NNM8 815 aa10.74□□□□□ -0.69
SCFD1-223ENST00000557076 MAMSTRQ6ZN01 415 aa10.74□□□□□ -0.69
SCFD1-223ENST00000557076 DCAF8Q5TAQ9 597 aa10.73□□□□□ -0.69
SCFD1-223ENST00000557076 IFNL1Q8IU54 200 aa10.71□□□□□ -0.69
SCFD1-223ENST00000557076 KLHL34Q8N239 644 aa10.71□□□□□ -0.69
SCFD1-223ENST00000557076 IER5LQ5T953 404 aa10.69□□□□□ -0.7
SCFD1-223ENST00000557076 SCUBE2Q9NQ36 999 aa10.68□□□□□ -0.7
SCFD1-223ENST00000557076 TRIM35Q9UPQ4 493 aa10.68□□□□□ -0.7
SCFD1-223ENST00000557076 SEC24BO95487 1268 aa10.67□□□□□ -0.7
SCFD1-223ENST00000557076 POTEJP0CG39 1038 aa10.67□□□□□ -0.7
SCFD1-223ENST00000557076 GSE1Q14687 1217 aa10.66□□□□□ -0.7
SCFD1-223ENST00000557076 POTEFA5A3E0 1075 aa10.65□□□□□ -0.7
SCFD1-223ENST00000557076 PYGBP11216 843 aa10.65□□□□□ -0.7
SCFD1-223ENST00000557076 TMEM106CQ9BVX2 250 aa10.65□□□□□ -0.7
SCFD1-223ENST00000557076 COLQQ9Y215 455 aaPredicted RBP10.6□□□□□ -0.71
SCFD1-223ENST00000557076 RB1CC1Q8TDY2 1594 aa10.57□□□□□ -0.72
SCFD1-223ENST00000557076 ZNF467Q7Z7K2 595 aaPredicted RBP10.57□□□□□ -0.72
SCFD1-223ENST00000557076 PCDHB8Q9UN66 801 aa10.56□□□□□ -0.72
SCFD1-223ENST00000557076 CHRM1P11229 460 aaPredicted RBP10.55□□□□□ -0.72
SCFD1-223ENST00000557076 PLCG2P16885 1265 aa10.55□□□□□ -0.72
SCFD1-223ENST00000557076 SPOCK2Q92563 424 aa10.55□□□□□ -0.72
SCFD1-223ENST00000557076 DNAJC5Q9H3Z4 198 aa10.55□□□□□ -0.72
SCFD1-223ENST00000557076 IFNLR1Q8IU57 520 aaPredicted RBP10.53□□□□□ -0.72
SCFD1-223ENST00000557076 IRX5P78411 483 aaPredicted RBP10.52□□□□□ -0.73
SCFD1-223ENST00000557076 POTEMA6NI47 508 aa10.51□□□□□ -0.73
SCFD1-223ENST00000557076 OCEL1Q9H607 264 aa10.49□□□□□ -0.73
SCFD1-223ENST00000557076 POTEGQ6S5H5 508 aa10.48□□□□□ -0.73
SCFD1-223ENST00000557076 GOLGA2Q08379 1002 aa10.46□□□□□ -0.73
SCFD1-223ENST00000557076 CIZ1Q9ULV3 898 aaPredicted RBP10.46□□□□□ -0.73
SCFD1-223ENST00000557076 NACADO15069 1562 aa10.45□□□□□ -0.74
SCFD1-223ENST00000557076 DCAF8L2P0C7V8 631 aa10.45□□□□□ -0.74
SCFD1-223ENST00000557076 FAM163AQ96GL9 167 aaPredicted RBP10.44□□□□□ -0.74
SCFD1-223ENST00000557076 PSEN1P49768 467 aa10.43□□□□□ -0.74
SCFD1-223ENST00000557076 MKRN3Q13064 507 aaKnown RBP10.42□□□□□ -0.74
SCFD1-223ENST00000557076 SLAIN1Q8ND83 568 aa10.42□□□□□ -0.74
SCFD1-223ENST00000557076 PCDH10Q9P2E7 1040 aa10.42□□□□□ -0.74
SCFD1-223ENST00000557076 PDAP1Q13442 181 aaKnown RBP10.41□□□□□ -0.74
SCFD1-223ENST00000557076 LCE2DQ5TA82 110 aaPredicted RBP10.4□□□□□ -0.74
SCFD1-223ENST00000557076 TRIM41Q8WV44 630 aa10.4□□□□□ -0.74
SCFD1-223ENST00000557076 PLSCR2Q9NRY7 297 aa10.38□□□□□ -0.75
SCFD1-223ENST00000557076 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.36□□□□□ -0.75
SCFD1-223ENST00000557076 PDCD7Q8N8D1 485 aaKnown RBP10.35□□□□□ -0.75
SCFD1-223ENST00000557076 L3MBTL3Q96JM7 780 aaPredicted RBP10.34□□□□□ -0.75
SCFD1-223ENST00000557076 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.34□□□□□ -0.753e-10■■■□□ 14.9
SCFD1-223ENST00000557076 C3orf67Q6ZVT6 689 aa10.3□□□□□ -0.76
SCFD1-223ENST00000557076 CABP2Q9NPB3 220 aa10.3□□□□□ -0.76
SCFD1-223ENST00000557076 SNPHO15079 494 aa10.29□□□□□ -0.76
SCFD1-223ENST00000557076 ILDR1Q86SU0 546 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-223ENST00000557076 CECR2Q9BXF3 1484 aa10.28□□□□□ -0.76
SCFD1-223ENST00000557076 BICRAQ9NZM4 1560 aa10.27□□□□□ -0.76
SCFD1-223ENST00000557076 ST18O60284 1047 aa10.27□□□□□ -0.77
SCFD1-223ENST00000557076 TMEM121BQ9BXQ6 578 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-223ENST00000557076 MYO15BQ96JP2 1530 aa10.23□□□□□ -0.77
SCFD1-223ENST00000557076 G3V3G9 751 aa10.23□□□□□ -0.77
SCFD1-223ENST00000557076 RIOK3O14730 519 aaKnown RBP10.2□□□□□ -0.78
SCFD1-223ENST00000557076 BOLA1Q9Y3E2 137 aa10.19□□□□□ -0.78
SCFD1-223ENST00000557076 DPY19L2Q6NUT2 758 aa10.18□□□□□ -0.78
SCFD1-223ENST00000557076 CDAN1Q8IWY9 1227 aa10.18□□□□□ -0.78
SCFD1-223ENST00000557076 UNC13AQ9UPW8 1703 aa10.17□□□□□ -0.78
SCFD1-223ENST00000557076 VGFO15240 615 aaPredicted RBP10.17□□□□□ -0.78
SCFD1-223ENST00000557076 EFCAB3Q8N7B9 438 aa10.17□□□□□ -0.78
SCFD1-223ENST00000557076 CC2D2AQ9P2K1 1620 aa10.16□□□□□ -0.78
SCFD1-223ENST00000557076 RNF25Q96BH1 459 aaPredicted RBP10.16□□□□□ -0.78
SCFD1-223ENST00000557076 SHROOM4Q9ULL8 1493 aa10.15□□□□□ -0.78
SCFD1-223ENST00000557076 TAOK2Q9UL54 1235 aa10.14□□□□□ -0.79
SCFD1-223ENST00000557076 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.13□□□□□ -0.79
SCFD1-223ENST00000557076 ZFP91Q96JP5 570 aaPredicted RBP10.13□□□□□ -0.79
SCFD1-223ENST00000557076 SOX12O15370 315 aa10.12□□□□□ -0.79
SCFD1-223ENST00000557076 MARVELD3Q96A59 401 aa10.08□□□□□ -0.8
SCFD1-223ENST00000557076 EMP3P54852 163 aa10.06□□□□□ -0.8
SCFD1-223ENST00000557076 EIF4G1Q04637 1599 aaKnown RBP10.05□□□□□ -0.8
SCFD1-223ENST00000557076 MICALL2Q8IY33 904 aa10.04□□□□□ -0.8
SCFD1-223ENST00000557076 ECM2O94769 699 aaPredicted RBP10.02□□□□□ -0.81
SCFD1-223ENST00000557076 DOK7Q18PE1 504 aa10.02□□□□□ -0.81
SCFD1-223ENST00000557076 PHF8Q9UPP1 1060 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms