RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 CCDC61Q9Y6R9 512 aa14.14□□□□□ -0.15
SCFD1-218ENST00000556256 ATMINO43313 823 aaPredicted RBP14.11□□□□□ -0.15
SCFD1-218ENST00000556256 PLEKHG5O94827 1062 aa14.08□□□□□ -0.16
SCFD1-218ENST00000556256 KIF12Q96FN5 646 aa14.08□□□□□ -0.16
SCFD1-218ENST00000556256 METRNQ9UJH8 293 aa14.06□□□□□ -0.16
SCFD1-218ENST00000556256 C7P10643 843 aa14.04□□□□□ -0.16
SCFD1-218ENST00000556256 RASEFQ8IZ41 740 aa14.04□□□□□ -0.16
SCFD1-218ENST00000556256 SLC39A7Q92504 469 aa14.04□□□□□ -0.16
SCFD1-218ENST00000556256 ATN1P54259 1190 aaPredicted RBP13.99□□□□□ -0.17
SCFD1-218ENST00000556256 PLCD3Q8N3E9 789 aa13.99□□□□□ -0.17
SCFD1-218ENST00000556256 MAP3K13O43283 966 aa13.98□□□□□ -0.17
SCFD1-218ENST00000556256 POTEJP0CG39 1038 aa13.98□□□□□ -0.17
SCFD1-218ENST00000556256 TRPC6Q9Y210 931 aa13.97□□□□□ -0.17
SCFD1-218ENST00000556256 BMP2KQ9NSY1 1161 aaPredicted RBP13.94□□□□□ -0.18
SCFD1-218ENST00000556256 FKBP8Q14318 412 aa13.89□□□□□ -0.19
SCFD1-218ENST00000556256 TIE1P35590 1138 aa13.88□□□□□ -0.19
SCFD1-218ENST00000556256 NUBP1P53384 320 aa13.88□□□□□ -0.19
SCFD1-218ENST00000556256 MAMSTRQ6ZN01 415 aa13.87□□□□□ -0.19
SCFD1-218ENST00000556256 POTEFA5A3E0 1075 aa13.86□□□□□ -0.19
SCFD1-218ENST00000556256 ZBTB47Q9UFB7 747 aaPredicted RBP13.86□□□□□ -0.19
SCFD1-218ENST00000556256 PLSCR2Q9NRY7 297 aa13.84□□□□□ -0.19
SCFD1-218ENST00000556256 POTEMA6NI47 508 aa13.82□□□□□ -0.2
SCFD1-218ENST00000556256 TTLL13PA6NNM8 815 aa13.82□□□□□ -0.2
SCFD1-218ENST00000556256 SGIP1Q9BQI5 828 aa13.81□□□□□ -0.2
SCFD1-218ENST00000556256 PCDHB13Q9Y5F0 798 aa13.81□□□□□ -0.2
SCFD1-218ENST00000556256 POTEGQ6S5H5 508 aa13.78□□□□□ -0.2
SCFD1-218ENST00000556256 SCUBE2Q9NQ36 999 aa13.78□□□□□ -0.2
SCFD1-218ENST00000556256 COLQQ9Y215 455 aaPredicted RBP13.77□□□□□ -0.21
SCFD1-218ENST00000556256 SEC24BO95487 1268 aa13.74□□□□□ -0.21
SCFD1-218ENST00000556256 IFNL1Q8IU54 200 aa13.74□□□□□ -0.21
SCFD1-218ENST00000556256 FAM212AQ96EL1 285 aa13.74□□□□□ -0.21
SCFD1-218ENST00000556256 TRIM35Q9UPQ4 493 aa13.73□□□□□ -0.21
SCFD1-218ENST00000556256 FAM163AQ96GL9 167 aaPredicted RBP13.69□□□□□ -0.22
SCFD1-218ENST00000556256 IER5LQ5T953 404 aa13.68□□□□□ -0.22
SCFD1-218ENST00000556256 LCE2DQ5TA82 110 aaPredicted RBP13.68□□□□□ -0.22
SCFD1-218ENST00000556256 TMEM106CQ9BVX2 250 aa13.66□□□□□ -0.22
SCFD1-218ENST00000556256 DCAF8Q5TAQ9 597 aa13.64□□□□□ -0.23
SCFD1-218ENST00000556256 FBXO3Q9UK99 471 aa13.64□□□□□ -0.23
SCFD1-218ENST00000556256 PYGBP11216 843 aa13.6□□□□□ -0.23
SCFD1-218ENST00000556256 PCDH10Q9P2E7 1040 aa13.59□□□□□ -0.23
SCFD1-218ENST00000556256 PCDHB8Q9UN66 801 aa13.53□□□□□ -0.24
SCFD1-218ENST00000556256 PLCG2P16885 1265 aa13.52□□□□□ -0.25
SCFD1-218ENST00000556256 IRX5P78411 483 aaPredicted RBP13.52□□□□□ -0.25
SCFD1-218ENST00000556256 KLHL34Q8N239 644 aa13.5□□□□□ -0.25
SCFD1-218ENST00000556256 VASPP50552 380 aaPredicted RBP13.49□□□□□ -0.25
SCFD1-218ENST00000556256 SLAIN1Q8ND83 568 aa13.48□□□□□ -0.25
SCFD1-218ENST00000556256 OCEL1Q9H607 264 aa13.47□□□□□ -0.25
SCFD1-218ENST00000556256 GSE1Q14687 1217 aa13.43□□□□□ -0.26
SCFD1-218ENST00000556256 ST18O60284 1047 aa13.38□□□□□ -0.27
SCFD1-218ENST00000556256 CHRM1P11229 460 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-218ENST00000556256 ZNF467Q7Z7K2 595 aaPredicted RBP13.37□□□□□ -0.27
SCFD1-218ENST00000556256 CDAN1Q8IWY9 1227 aa13.33□□□□□ -0.28
SCFD1-218ENST00000556256 PDCD7Q8N8D1 485 aaKnown RBP13.31□□□□□ -0.28
SCFD1-218ENST00000556256 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.31□□□□□ -0.28
SCFD1-218ENST00000556256 PSEN1P49768 467 aa13.29□□□□□ -0.28
SCFD1-218ENST00000556256 GOLGA2Q08379 1002 aa13.28□□□□□ -0.28
SCFD1-218ENST00000556256 MKRN3Q13064 507 aaKnown RBP13.28□□□□□ -0.28
SCFD1-218ENST00000556256 IFNLR1Q8IU57 520 aaPredicted RBP13.27□□□□□ -0.29
SCFD1-218ENST00000556256 SPOCK2Q92563 424 aa13.24□□□□□ -0.29
SCFD1-218ENST00000556256 SNPHO15079 494 aa13.23□□□□□ -0.29
SCFD1-218ENST00000556256 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.23□□□□□ -0.291e-7■■■□□ 16
SCFD1-218ENST00000556256 L3MBTL3Q96JM7 780 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-218ENST00000556256 CIZ1Q9ULV3 898 aaPredicted RBP13.21□□□□□ -0.29
SCFD1-218ENST00000556256 TMEM121BQ9BXQ6 578 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-218ENST00000556256 PDAP1Q13442 181 aaKnown RBP13.19□□□□□ -0.3
SCFD1-218ENST00000556256 C3orf67Q6ZVT6 689 aa13.18□□□□□ -0.3
SCFD1-218ENST00000556256 ILDR1Q86SU0 546 aaPredicted RBP13.16□□□□□ -0.3
SCFD1-218ENST00000556256 MARVELD3Q96A59 401 aa13.15□□□□□ -0.3
SCFD1-218ENST00000556256 DPY19L2Q6NUT2 758 aa13.13□□□□□ -0.31
SCFD1-218ENST00000556256 CABP2Q9NPB3 220 aa13.12□□□□□ -0.31
SCFD1-218ENST00000556256 SPNS2Q8IVW8 549 aa13.02□□□□□ -0.33
SCFD1-218ENST00000556256 BOLA1Q9Y3E2 137 aa13.02□□□□□ -0.33
SCFD1-218ENST00000556256 EMP3P54852 163 aa13.01□□□□□ -0.33
SCFD1-218ENST00000556256 G3V3G9 751 aa12.98□□□□□ -0.33
SCFD1-218ENST00000556256 MMRN1Q13201 1228 aa12.98□□□□□ -0.33
SCFD1-218ENST00000556256 TRIM41Q8WV44 630 aa12.98□□□□□ -0.33
SCFD1-218ENST00000556256 POTEB3A0JP26 581 aa12.97□□□□□ -0.33
SCFD1-218ENST00000556256 POTEBQ6S5H4 581 aa12.97□□□□□ -0.33
SCFD1-218ENST00000556256 EFCAB3Q8N7B9 438 aa12.96□□□□□ -0.33
SCFD1-218ENST00000556256 FAM205CA6NFA0 338 aa12.94□□□□□ -0.34
SCFD1-218ENST00000556256 HOXB3P14651 431 aaPredicted RBP12.93□□□□□ -0.34
SCFD1-218ENST00000556256 HS3ST6Q96QI5 342 aa12.93□□□□□ -0.34
SCFD1-218ENST00000556256 KRTAP3-3Q9BYR6 98 aa12.88□□□□□ -0.35
SCFD1-218ENST00000556256 KRTAP3-2Q9BYR7 98 aa12.88□□□□□ -0.35
SCFD1-218ENST00000556256 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
SCFD1-218ENST00000556256 RNF25Q96BH1 459 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-218ENST00000556256 ZNF710Q8N1W2 664 aa12.84□□□□□ -0.35
SCFD1-218ENST00000556256 HOXB1P14653 301 aaPredicted RBP12.83□□□□□ -0.36
SCFD1-218ENST00000556256 DOK7Q18PE1 504 aa12.82□□□□□ -0.36
SCFD1-218ENST00000556256 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-218ENST00000556256 SOX12O15370 315 aa12.81□□□□□ -0.36
SCFD1-218ENST00000556256 MICALL2Q8IY33 904 aa12.81□□□□□ -0.36
SCFD1-218ENST00000556256 ZFP91Q96JP5 570 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-218ENST00000556256 TMEM92Q6UXU6 159 aa12.79□□□□□ -0.36
SCFD1-218ENST00000556256 VGFO15240 615 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-218ENST00000556256 MS4A4AQ96JQ5 239 aa12.78□□□□□ -0.36
SCFD1-218ENST00000556256 PHF8Q9UPP1 1060 aa12.76□□□□□ -0.37
SCFD1-218ENST00000556256 ERBB3P21860 1342 aa12.75□□□□□ -0.37
SCFD1-218ENST00000556256 RIMBP2O15034 1052 aa12.73□□□□□ -0.37
SCFD1-218ENST00000556256 VARS2Q5ST30 1063 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms