RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 CEP164Q9UPV0 1460 aa14.15□□□□□ -0.14
ACTN1-216ENST00000556083 PPP1R15AO75807 674 aaPredicted RBP14.15□□□□□ -0.14
ACTN1-216ENST00000556083 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.15□□□□□ -0.142e-7■□□□□ 9
ACTN1-216ENST00000556083 BECN1Q14457 450 aa14.14□□□□□ -0.15
ACTN1-216ENST00000556083 CDK11BP21127 795 aaKnown RBP14.14□□□□□ -0.15
ACTN1-216ENST00000556083 MS4A1P11836 297 aa14.14□□□□□ -0.15
ACTN1-216ENST00000556083 BAZ1BQ9UIG0 1483 aaKnown RBP14.13□□□□□ -0.15
ACTN1-216ENST00000556083 PNNQ9H307 717 aaKnown RBP14.13□□□□□ -0.15
ACTN1-216ENST00000556083 WRNQ14191 1432 aaPredicted RBP eCLIP14.13□□□□□ -0.15
ACTN1-216ENST00000556083 HDGFP51858 240 aaKnown RBP14.12□□□□□ -0.15
ACTN1-216ENST00000556083 DDX10Q13206 875 aaKnown RBP14.12□□□□□ -0.15
ACTN1-216ENST00000556083 FKBP8Q14318 412 aa14.12□□□□□ -0.15
ACTN1-216ENST00000556083 FAM9BQ8IZU0 186 aa14.12□□□□□ -0.15
ACTN1-216ENST00000556083 FHAD1B1AJZ9 1412 aa14.12□□□□□ -0.15
ACTN1-216ENST00000556083 TNIKQ9UKE5 1360 aa14.11□□□□□ -0.15
ACTN1-216ENST00000556083 GOLGA6L22H0YM25 854 aa14.1□□□□□ -0.15
ACTN1-216ENST00000556083 NCLP19338 710 aaKnown RBP14.1□□□□□ -0.15
ACTN1-216ENST00000556083 HAP1P54257 671 aaPredicted RBP14.09□□□□□ -0.15
ACTN1-216ENST00000556083 CHIC2Q9UKJ5 165 aa14.09□□□□□ -0.15
ACTN1-216ENST00000556083 NUDCQ9Y266 331 aa14.08□□□□□ -0.15
ACTN1-216ENST00000556083 CFAP44Q96MT7 982 aa14.08□□□□□ -0.16
ACTN1-216ENST00000556083 CFDP1Q9UEE9 299 aaPredicted RBP14.08□□□□□ -0.16
ACTN1-216ENST00000556083 CASC1Q6TDU7 716 aa14.07□□□□□ -0.16
ACTN1-216ENST00000556083 BAZ1AQ9NRL2 1556 aaPredicted RBP14.06□□□□□ -0.16
ACTN1-216ENST00000556083 BCL11AQ9H165 835 aa14.06□□□□□ -0.16
ACTN1-216ENST00000556083 KNSTRNQ9Y448 316 aa14.05□□□□□ -0.16
ACTN1-216ENST00000556083 CHMP4AQ9BY43 222 aa14.03□□□□□ -0.16
ACTN1-216ENST00000556083 KANK1Q14678 1352 aa14.02□□□□□ -0.16
ACTN1-216ENST00000556083 CEP162Q5TB80 1403 aa14.02□□□□□ -0.17
ACTN1-216ENST00000556083 KDM2AQ9Y2K7 1162 aa14.02□□□□□ -0.17
ACTN1-216ENST00000556083 MAPK8IP3Q9UPT6 1336 aa13.97□□□□□ -0.17
ACTN1-216ENST00000556083 C14orf37Q86TY3 774 aa13.97□□□□□ -0.17
ACTN1-216ENST00000556083 ZRSR1Q15695 479 aaKnown RBP13.96□□□□□ -0.17
ACTN1-216ENST00000556083 CCNB3Q8WWL7 1395 aa13.94□□□□□ -0.18
ACTN1-216ENST00000556083 ARID4BQ4LE39 1312 aaPredicted RBP13.94□□□□□ -0.18
ACTN1-216ENST00000556083 ERCC6Q03468 1493 aa13.93□□□□□ -0.18
ACTN1-216ENST00000556083 RRP7BPQ9NSQ0 103 aa13.93□□□□□ -0.18
ACTN1-216ENST00000556083 PPM1GO15355 546 aaPredicted RBP13.93□□□□□ -0.18
ACTN1-216ENST00000556083 CARD11Q9BXL7 1154 aa13.93□□□□□ -0.18
ACTN1-216ENST00000556083 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
ACTN1-216ENST00000556083 CARMIL2Q6F5E8 1435 aa13.91□□□□□ -0.18
ACTN1-216ENST00000556083 SCAF1Q9H7N4 1312 aaKnown RBP13.9□□□□□ -0.18
ACTN1-216ENST00000556083 FTSJ3Q8IY81 847 aaKnown RBP13.9□□□□□ -0.19
ACTN1-216ENST00000556083 POGKQ9P215 609 aa13.89□□□□□ -0.19
ACTN1-216ENST00000556083 TMF1P82094 1093 aa13.89□□□□□ -0.19
ACTN1-216ENST00000556083 TRIM44Q96DX7 344 aaPredicted RBP13.89□□□□□ -0.19
ACTN1-216ENST00000556083 NRDCO43847 1150 aa13.88□□□□□ -0.19
ACTN1-216ENST00000556083 SALL2Q9Y467 1007 aaPredicted RBP13.86□□□□□ -0.19
ACTN1-216ENST00000556083 RSPH4AQ5TD94 716 aa13.86□□□□□ -0.19
ACTN1-216ENST00000556083 CALD1Q05682 793 aaKnown RBP13.86□□□□□ -0.19
ACTN1-216ENST00000556083 PDS5BQ9NTI5 1447 aa13.85□□□□□ -0.19
ACTN1-216ENST00000556083 GOLGA6L6A8MZA4 724 aa13.85□□□□□ -0.19
ACTN1-216ENST00000556083 ERICH6BQ5W0A0 696 aa13.85□□□□□ -0.19
ACTN1-216ENST00000556083 HDAC5Q9UQL6 1122 aa13.85□□□□□ -0.19
ACTN1-216ENST00000556083 PLPPR3Q6T4P5 718 aa13.84□□□□□ -0.19
ACTN1-216ENST00000556083 CARMIL1Q5VZK9 1371 aa13.84□□□□□ -0.19
ACTN1-216ENST00000556083 SMARCA2P51531 1590 aa13.83□□□□□ -0.19
ACTN1-216ENST00000556083 FMN1Q68DA7 1419 aa13.81□□□□□ -0.2
ACTN1-216ENST00000556083 RGL3Q3MIN7 710 aa13.81□□□□□ -0.2
ACTN1-216ENST00000556083 PPP4R2Q9NY27 417 aa13.81□□□□□ -0.2
ACTN1-216ENST00000556083 CCER2I3L3R5 266 aa13.8□□□□□ -0.2
ACTN1-216ENST00000556083 PTMSP20962 102 aa13.79□□□□□ -0.2
ACTN1-216ENST00000556083 TNNT2P45379 298 aaPredicted RBP13.79□□□□□ -0.2
ACTN1-216ENST00000556083 L1TD1Q5T7N2 865 aaKnown RBP13.78□□□□□ -0.2
ACTN1-216ENST00000556083 MYO15BQ96JP2 1530 aa13.78□□□□□ -0.2
ACTN1-216ENST00000556083 MCCP23508 829 aa13.77□□□□□ -0.21
ACTN1-216ENST00000556083 A0A0G2JS52 829 aa13.76□□□□□ -0.21
ACTN1-216ENST00000556083 IPO8O15397 1037 aaKnown RBP13.76□□□□□ -0.21
ACTN1-216ENST00000556083 EIF3AQ14152 1382 aaKnown RBP13.75□□□□□ -0.21
ACTN1-216ENST00000556083 CUX2O14529 1486 aa13.75□□□□□ -0.21
ACTN1-216ENST00000556083 ARHGAP35Q9NRY4 1499 aa13.75□□□□□ -0.21
ACTN1-216ENST00000556083 EFCAB2Q5VUJ9 269 aa13.75□□□□□ -0.21
ACTN1-216ENST00000556083 MIER1Q8N108 512 aa13.75□□□□□ -0.21
ACTN1-216ENST00000556083 HDGFL2Q7Z4V5 671 aaPredicted RBP13.74□□□□□ -0.21
ACTN1-216ENST00000556083 ZBTB7CA1YPR0 619 aa13.74□□□□□ -0.21
ACTN1-216ENST00000556083 PTMAP06454 111 aaKnown RBP13.73□□□□□ -0.21
ACTN1-216ENST00000556083 VPS8Q8N3P4 1428 aa13.72□□□□□ -0.21
ACTN1-216ENST00000556083 SETD5Q9C0A6 1442 aa13.71□□□□□ -0.21
ACTN1-216ENST00000556083 ANKRD30AQ9BXX3 1397 aa13.71□□□□□ -0.21
ACTN1-216ENST00000556083 RALBP1Q15311 655 aa13.7□□□□□ -0.22
ACTN1-216ENST00000556083 GOLGA2Q08379 1002 aa13.7□□□□□ -0.22
ACTN1-216ENST00000556083 OS9Q13438 667 aaPredicted RBP13.7□□□□□ -0.22
ACTN1-216ENST00000556083 FGD1P98174 961 aa13.69□□□□□ -0.22
ACTN1-216ENST00000556083 ROCK2O75116 1388 aaKnown RBP13.69□□□□□ -0.22
ACTN1-216ENST00000556083 NPHP1O15259 732 aa13.68□□□□□ -0.22
ACTN1-216ENST00000556083 RTF1Q92541 710 aaKnown RBP13.68□□□□□ -0.22
ACTN1-216ENST00000556083 HTATSF1O43719 755 aaKnown RBP13.68□□□□□ -0.22
ACTN1-216ENST00000556083 KTN1Q86UP2 1357 aaKnown RBP13.68□□□□□ -0.22
ACTN1-216ENST00000556083 MORC1Q86VD1 984 aa13.67□□□□□ -0.22
ACTN1-216ENST00000556083 PHLDB1Q86UU1 1377 aa13.67□□□□□ -0.22
ACTN1-216ENST00000556083 KCNJ4P48050 445 aa13.66□□□□□ -0.22
ACTN1-216ENST00000556083 ABCC8Q09428 1581 aa13.66□□□□□ -0.22
ACTN1-216ENST00000556083 CCDC34Q96HJ3 373 aa13.65□□□□□ -0.22
ACTN1-216ENST00000556083 GOLGA6L4A6NEF3 574 aa13.65□□□□□ -0.22
ACTN1-216ENST00000556083 CHMP4CQ96CF2 233 aa13.65□□□□□ -0.22
ACTN1-216ENST00000556083 DCAF11Q8TEB1 546 aa13.64□□□□□ -0.23
ACTN1-216ENST00000556083 U2SURPO15042 1029 aaKnown RBP13.64□□□□□ -0.23
ACTN1-216ENST00000556083 LMOD3Q0VAK6 560 aa13.64□□□□□ -0.23
ACTN1-216ENST00000556083 HSCBQ8IWL3 235 aa13.64□□□□□ -0.23
ACTN1-216ENST00000556083 HSP90AB1P08238 724 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms