RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 NPM1P06748 294 aaKnown RBP eCLIP5.78□□□□□ -1.48
NEK9-208ENST00000555961 ZRANB1Q9UGI0 708 aa5.75□□□□□ -1.49
NEK9-208ENST00000555961 POTEJP0CG39 1038 aa5.74□□□□□ -1.49
NEK9-208ENST00000555961 PROM2Q8N271 834 aa5.74□□□□□ -1.49
NEK9-208ENST00000555961 FKBP8Q14318 412 aa5.71□□□□□ -1.5
NEK9-208ENST00000555961 ZNF579Q8NAF0 562 aaKnown RBP5.71□□□□□ -1.5
NEK9-208ENST00000555961 MIER1Q8N108 512 aa5.7□□□□□ -1.5
NEK9-208ENST00000555961 PLCD3Q8N3E9 789 aa5.69□□□□□ -1.5
NEK9-208ENST00000555961 ZBTB47Q9UFB7 747 aaPredicted RBP5.66□□□□□ -1.5
NEK9-208ENST00000555961 METRNQ9UJH8 293 aa5.66□□□□□ -1.5
NEK9-208ENST00000555961 MNX1P50219 401 aaPredicted RBP5.65□□□□□ -1.5
NEK9-208ENST00000555961 PHF12Q96QT6 1004 aa5.64□□□□□ -1.51
NEK9-208ENST00000555961 ST18O60284 1047 aa5.63□□□□□ -1.51
NEK9-208ENST00000555961 TSPYL2Q9H2G4 693 aaPredicted RBP5.63□□□□□ -1.51
NEK9-208ENST00000555961 FBXO3Q9UK99 471 aa5.63□□□□□ -1.51
NEK9-208ENST00000555961 GALR2O43603 387 aaPredicted RBP5.61□□□□□ -1.51
NEK9-208ENST00000555961 PELP1Q8IZL8 1130 aaKnown RBP5.61□□□□□ -1.51
NEK9-208ENST00000555961 C7P10643 843 aa5.6□□□□□ -1.51
NEK9-208ENST00000555961 SLC39A7Q92504 469 aa5.58□□□□□ -1.52
NEK9-208ENST00000555961 FAM212AQ96EL1 285 aa5.56□□□□□ -1.52
NEK9-208ENST00000555961 MS4A3Q96HJ5 214 aa5.56□□□□□ -1.52
NEK9-208ENST00000555961 CCDC61Q9Y6R9 512 aa5.56□□□□□ -1.52
NEK9-208ENST00000555961 RASEFQ8IZ41 740 aa5.55□□□□□ -1.52
NEK9-208ENST00000555961 KLHL34Q8N239 644 aa5.54□□□□□ -1.52
NEK9-208ENST00000555961 KIF12Q96FN5 646 aa5.53□□□□□ -1.52
NEK9-208ENST00000555961 VASPP50552 380 aaPredicted RBP5.51□□□□□ -1.53
NEK9-208ENST00000555961 DCAF8Q5TAQ9 597 aa5.51□□□□□ -1.53
NEK9-208ENST00000555961 MAP3K13O43283 966 aa5.5□□□□□ -1.53
NEK9-208ENST00000555961 NUBP1P53384 320 aa5.5□□□□□ -1.53
NEK9-208ENST00000555961 ASTLQ6HA08 431 aaPredicted RBP5.5□□□□□ -1.53
NEK9-208ENST00000555961 PCDHB13Q9Y5F0 798 aa5.5□□□□□ -1.53
NEK9-208ENST00000555961 ATMINO43313 823 aaPredicted RBP5.49□□□□□ -1.53
NEK9-208ENST00000555961 TIE1P35590 1138 aa5.49□□□□□ -1.53
NEK9-208ENST00000555961 SGIP1Q9BQI5 828 aa5.49□□□□□ -1.53
NEK9-208ENST00000555961 TMEM121BQ9BXQ6 578 aaPredicted RBP5.49□□□□□ -1.53
NEK9-208ENST00000555961 GSE1Q14687 1217 aa5.47□□□□□ -1.53
NEK9-208ENST00000555961 RNF166Q96A37 237 aaPredicted RBP5.47□□□□□ -1.53
NEK9-208ENST00000555961 BMP2KQ9NSY1 1161 aaPredicted RBP5.46□□□□□ -1.54
NEK9-208ENST00000555961 SEC24BO95487 1268 aa5.45□□□□□ -1.54
NEK9-208ENST00000555961 ATN1P54259 1190 aaPredicted RBP5.45□□□□□ -1.54
NEK9-208ENST00000555961 LOC100996750A0A140TA64 210 aa5.43□□□□□ -1.54
NEK9-208ENST00000555961 TTLL13PA6NNM8 815 aa5.43□□□□□ -1.54
NEK9-208ENST00000555961 PYGBP11216 843 aa5.43□□□□□ -1.54
NEK9-208ENST00000555961 KRTAP4-6Q9BYQ5 205 aa5.43□□□□□ -1.54
NEK9-208ENST00000555961 TRPC6Q9Y210 931 aa5.43□□□□□ -1.54
NEK9-208ENST00000555961 IFNL1Q8IU54 200 aa5.42□□□□□ -1.54
NEK9-208ENST00000555961 SPOCK2Q92563 424 aa5.42□□□□□ -1.54
NEK9-208ENST00000555961 TMEM106CQ9BVX2 250 aa5.42□□□□□ -1.54
NEK9-208ENST00000555961 KRTAP3-3Q9BYR6 98 aa5.42□□□□□ -1.54
NEK9-208ENST00000555961 KRTAP3-2Q9BYR7 98 aa5.42□□□□□ -1.54
NEK9-208ENST00000555961 IER5LQ5T953 404 aa5.41□□□□□ -1.54
NEK9-208ENST00000555961 TRIM35Q9UPQ4 493 aa5.41□□□□□ -1.54
NEK9-208ENST00000555961 ZNF467Q7Z7K2 595 aaPredicted RBP5.4□□□□□ -1.54
NEK9-208ENST00000555961 GOLGA2Q08379 1002 aa5.39□□□□□ -1.55
NEK9-208ENST00000555961 MARVELD3Q96A59 401 aa5.39□□□□□ -1.55
NEK9-208ENST00000555961 CIZ1Q9ULV3 898 aaPredicted RBP5.39□□□□□ -1.55
NEK9-208ENST00000555961 PLCG2P16885 1265 aa5.38□□□□□ -1.55
NEK9-208ENST00000555961 PCDHB8Q9UN66 801 aa5.37□□□□□ -1.55
NEK9-208ENST00000555961 IFNLR1Q8IU57 520 aaPredicted RBP5.36□□□□□ -1.55
NEK9-208ENST00000555961 SLAIN1Q8ND83 568 aa5.36□□□□□ -1.55
NEK9-208ENST00000555961 CHRM1P11229 460 aaPredicted RBP5.35□□□□□ -1.55
NEK9-208ENST00000555961 MKRN3Q13064 507 aaKnown RBP5.34□□□□□ -1.55
NEK9-208ENST00000555961 TRIM41Q8WV44 630 aa5.34□□□□□ -1.55
NEK9-208ENST00000555961 COLQQ9Y215 455 aaPredicted RBP5.34□□□□□ -1.55
NEK9-208ENST00000555961 POTEFA5A3E0 1075 aa5.32□□□□□ -1.56
NEK9-208ENST00000555961 PSEN1P49768 467 aa5.32□□□□□ -1.56
NEK9-208ENST00000555961 PDAP1Q13442 181 aaKnown RBP5.32□□□□□ -1.56
NEK9-208ENST00000555961 OCEL1Q9H607 264 aa5.32□□□□□ -1.56
NEK9-208ENST00000555961 IRX5P78411 483 aaPredicted RBP5.3□□□□□ -1.56
NEK9-208ENST00000555961 MYT1LQ9UL68 1186 aa5.29□□□□□ -1.56
NEK9-208ENST00000555961 G3V3G9 751 aa5.28□□□□□ -1.56
NEK9-208ENST00000555961 SNPHO15079 494 aa5.28□□□□□ -1.56
NEK9-208ENST00000555961 EMP3P54852 163 aa5.28□□□□□ -1.56
NEK9-208ENST00000555961 L3MBTL3Q96JM7 780 aaPredicted RBP5.28□□□□□ -1.56
NEK9-208ENST00000555961 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.28□□□□□ -1.56
NEK9-208ENST00000555961 C3orf67Q6ZVT6 689 aa5.27□□□□□ -1.57
NEK9-208ENST00000555961 IRX2Q9BZI1 471 aaPredicted RBP5.27□□□□□ -1.57
NEK9-208ENST00000555961 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.27□□□□□ -1.572e-7■■■□□ 17.5
NEK9-208ENST00000555961 CABP2Q9NPB3 220 aa5.26□□□□□ -1.57
NEK9-208ENST00000555961 HS3ST6Q96QI5 342 aa5.25□□□□□ -1.57
NEK9-208ENST00000555961 PLA2G2EQ9NZK7 142 aa5.25□□□□□ -1.57
NEK9-208ENST00000555961 TAOK2Q9UL54 1235 aa5.25□□□□□ -1.57
NEK9-208ENST00000555961 RIOK3O14730 519 aaKnown RBP5.23□□□□□ -1.57
NEK9-208ENST00000555961 PDCD7Q8N8D1 485 aaKnown RBP5.22□□□□□ -1.57
NEK9-208ENST00000555961 FAM205CA6NFA0 338 aa5.21□□□□□ -1.58
NEK9-208ENST00000555961 VGFO15240 615 aaPredicted RBP5.21□□□□□ -1.58
NEK9-208ENST00000555961 BOLA1Q9Y3E2 137 aa5.19□□□□□ -1.58
NEK9-208ENST00000555961 POTEB3A0JP26 581 aa5.18□□□□□ -1.58
NEK9-208ENST00000555961 POTEBQ6S5H4 581 aa5.18□□□□□ -1.58
NEK9-208ENST00000555961 EFCAB3Q8N7B9 438 aa5.18□□□□□ -1.58
NEK9-208ENST00000555961 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.17□□□□□ -1.58
NEK9-208ENST00000555961 SOX12O15370 315 aa5.17□□□□□ -1.58
NEK9-208ENST00000555961 ECM2O94769 699 aaPredicted RBP5.17□□□□□ -1.58
NEK9-208ENST00000555961 ZFP91Q96JP5 570 aaPredicted RBP5.17□□□□□ -1.58
NEK9-208ENST00000555961 DPY19L2Q6NUT2 758 aa5.15□□□□□ -1.59
NEK9-208ENST00000555961 ILDR1Q86SU0 546 aaPredicted RBP5.15□□□□□ -1.59
NEK9-208ENST00000555961 RNF25Q96BH1 459 aaPredicted RBP5.14□□□□□ -1.59
NEK9-208ENST00000555961 STK24Q9Y6E0 443 aa5.14□□□□□ -1.59
NEK9-208ENST00000555961 STK25O00506 426 aa5.13□□□□□ -1.59
NEK9-208ENST00000555961 NLRP6P59044 892 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms