RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 HNRNPUQ00839 825 aaKnown RBP eCLIP11.07□□□□□ -0.64
SYNE2-220ENST00000555612 RSF1Q96T23 1441 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-220ENST00000555612 LMOD2Q6P5Q4 547 aa11.05□□□□□ -0.64
SYNE2-220ENST00000555612 CFDP1Q9UEE9 299 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-220ENST00000555612 CLIP1P30622 1438 aa11.05□□□□□ -0.64
SYNE2-220ENST00000555612 HSP90AA1P07900 732 aaKnown RBP11.05□□□□□ -0.64
SYNE2-220ENST00000555612 ACIN1Q9UKV3 1341 aaKnown RBP11.04□□□□□ -0.64
SYNE2-220ENST00000555612 ARXQ96QS3 562 aa11.04□□□□□ -0.64
SYNE2-220ENST00000555612 MLECQ14165 292 aa11.03□□□□□ -0.64
SYNE2-220ENST00000555612 EEA1Q15075 1411 aa11.02□□□□□ -0.65
SYNE2-220ENST00000555612 HIRIP3Q9BW71 556 aaPredicted RBP11.01□□□□□ -0.65
SYNE2-220ENST00000555612 ANP32AP39687 249 aaKnown RBP11.01□□□□□ -0.65
SYNE2-220ENST00000555612 BAZ1AQ9NRL2 1556 aaPredicted RBP11□□□□□ -0.65
SYNE2-220ENST00000555612 PPM1GO15355 546 aaPredicted RBP11□□□□□ -0.65
SYNE2-220ENST00000555612 MRS2Q9HD23 443 aa10.99□□□□□ -0.65
SYNE2-220ENST00000555612 UPF2Q9HAU5 1272 aaKnown RBP10.98□□□□□ -0.65
SYNE2-220ENST00000555612 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.98□□□□□ -0.65
SYNE2-220ENST00000555612 WRNQ14191 1432 aaPredicted RBP eCLIP10.98□□□□□ -0.65
SYNE2-220ENST00000555612 KIF27Q86VH2 1401 aa10.97□□□□□ -0.65
SYNE2-220ENST00000555612 POGKQ9P215 609 aa10.96□□□□□ -0.65
SYNE2-220ENST00000555612 FKBP8Q14318 412 aa10.95□□□□□ -0.66
SYNE2-220ENST00000555612 MYH16Q9H6N6 1097 aa10.95□□□□□ -0.66
SYNE2-220ENST00000555612 EIF4G2P78344 907 aaKnown RBP eCLIP10.95□□□□□ -0.66
SYNE2-220ENST00000555612 GOLGA3Q08378 1498 aa10.93□□□□□ -0.66
SYNE2-220ENST00000555612 NPHP1O15259 732 aa10.92□□□□□ -0.66
SYNE2-220ENST00000555612 EIF4G1Q04637 1599 aaKnown RBP10.92□□□□□ -0.66
SYNE2-220ENST00000555612 CFAP53Q96M91 514 aa10.91□□□□□ -0.66
SYNE2-220ENST00000555612 CCDC136Q96JN2 1154 aa10.89□□□□□ -0.67
SYNE2-220ENST00000555612 SENP3-EIF4A1A0A087X0R7 540 aa10.89□□□□□ -0.67
SYNE2-220ENST00000555612 KNSTRNQ9Y448 316 aa10.89□□□□□ -0.67
SYNE2-220ENST00000555612 CARD11Q9BXL7 1154 aa10.89□□□□□ -0.67
SYNE2-220ENST00000555612 CDCA8Q53HL2 280 aa10.88□□□□□ -0.67
SYNE2-220ENST00000555612 ANP32BQ92688 251 aaKnown RBP10.87□□□□□ -0.67
SYNE2-220ENST00000555612 CCNB3Q8WWL7 1395 aa10.87□□□□□ -0.67
SYNE2-220ENST00000555612 CEP162Q5TB80 1403 aa10.87□□□□□ -0.67
SYNE2-220ENST00000555612 LAS1LQ9Y4W2 734 aaKnown RBP10.86□□□□□ -0.67
SYNE2-220ENST00000555612 TNNT2P45379 298 aaPredicted RBP10.86□□□□□ -0.67
SYNE2-220ENST00000555612 SOX12O15370 315 aa10.86□□□□□ -0.67
SYNE2-220ENST00000555612 GGT6Q6P531 493 aa10.86□□□□□ -0.67
SYNE2-220ENST00000555612 TNIKQ9UKE5 1360 aa10.86□□□□□ -0.67
SYNE2-220ENST00000555612 NEUROD2Q15784 382 aa10.85□□□□□ -0.67
SYNE2-220ENST00000555612 HDGFP51858 240 aaKnown RBP10.84□□□□□ -0.67
SYNE2-220ENST00000555612 KANK1Q14678 1352 aa10.84□□□□□ -0.67
SYNE2-220ENST00000555612 MAPK8IP3Q9UPT6 1336 aa10.84□□□□□ -0.67
SYNE2-220ENST00000555612 CUX2O14529 1486 aa10.83□□□□□ -0.68
SYNE2-220ENST00000555612 IRX6P78412 446 aaPredicted RBP10.83□□□□□ -0.68
SYNE2-220ENST00000555612 SAFB2Q14151 953 aaKnown RBP eCLIP10.83□□□□□ -0.68
SYNE2-220ENST00000555612 CEP164Q9UPV0 1460 aa10.81□□□□□ -0.68
SYNE2-220ENST00000555612 CARMIL1Q5VZK9 1371 aa10.81□□□□□ -0.68
SYNE2-220ENST00000555612 NUDCQ9Y266 331 aa10.81□□□□□ -0.68
SYNE2-220ENST00000555612 CECR2Q9BXF3 1484 aa10.81□□□□□ -0.68
SYNE2-220ENST00000555612 U2SURPO15042 1029 aaKnown RBP10.79□□□□□ -0.68
SYNE2-220ENST00000555612 SRPK2P78362 688 aaKnown RBP10.79□□□□□ -0.68
SYNE2-220ENST00000555612 CDK11BP21127 795 aaKnown RBP10.79□□□□□ -0.68
SYNE2-220ENST00000555612 STK26Q9P289 416 aa10.78□□□□□ -0.68
SYNE2-220ENST00000555612 PDS5BQ9NTI5 1447 aa10.78□□□□□ -0.68
SYNE2-220ENST00000555612 DCAF11Q8TEB1 546 aa10.77□□□□□ -0.69
SYNE2-220ENST00000555612 CC2D1BQ5T0F9 858 aaKnown RBP10.76□□□□□ -0.69
SYNE2-220ENST00000555612 FTSJ3Q8IY81 847 aaKnown RBP10.76□□□□□ -0.69
SYNE2-220ENST00000555612 TULP1O00294 542 aaPredicted RBP10.76□□□□□ -0.69
SYNE2-220ENST00000555612 CARMIL2Q6F5E8 1435 aa10.76□□□□□ -0.69
SYNE2-220ENST00000555612 TDRD9Q8NDG6 1382 aaKnown RBP10.75□□□□□ -0.69
SYNE2-220ENST00000555612 NCAPD3P42695 1498 aa10.75□□□□□ -0.69
SYNE2-220ENST00000555612 SIN3AQ96ST3 1273 aa10.75□□□□□ -0.69
SYNE2-220ENST00000555612 PEG3Q9GZU2 1588 aa10.75□□□□□ -0.69
SYNE2-220ENST00000555612 PAK3O75914 559 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-220ENST00000555612 TAOK2Q9UL54 1235 aa10.74□□□□□ -0.69
SYNE2-220ENST00000555612 FHAD1B1AJZ9 1412 aa10.73□□□□□ -0.69
SYNE2-220ENST00000555612 CCDC9Q9Y3X0 531 aaKnown RBP10.73□□□□□ -0.69
SYNE2-220ENST00000555612 OS9Q13438 667 aaPredicted RBP10.73□□□□□ -0.69
SYNE2-220ENST00000555612 MIER1Q8N108 512 aa10.73□□□□□ -0.69
SYNE2-220ENST00000555612 SMARCA2P51531 1590 aa10.72□□□□□ -0.69
SYNE2-220ENST00000555612 CSB-PGBD3P0DP91 1061 aa10.72□□□□□ -0.69
SYNE2-220ENST00000555612 MROH2BQ7Z745 1585 aa10.72□□□□□ -0.69
SYNE2-220ENST00000555612 GOLGA2Q08379 1002 aa10.72□□□□□ -0.69
SYNE2-220ENST00000555612 SOGA1O94964 1423 aa10.71□□□□□ -0.69
SYNE2-220ENST00000555612 TMF1P82094 1093 aa10.71□□□□□ -0.7
SYNE2-220ENST00000555612 EFCAB2Q5VUJ9 269 aa10.71□□□□□ -0.7
SYNE2-220ENST00000555612 FRAT1Q92837 279 aaPredicted RBP10.71□□□□□ -0.7
SYNE2-220ENST00000555612 CASC1Q6TDU7 716 aa10.69□□□□□ -0.7
SYNE2-220ENST00000555612 TPRNQ4KMQ1 711 aa10.69□□□□□ -0.7
SYNE2-220ENST00000555612 ZNF330Q9Y3S2 320 aaPredicted RBP10.68□□□□□ -0.7
SYNE2-220ENST00000555612 MORC1Q86VD1 984 aa10.68□□□□□ -0.7
SYNE2-220ENST00000555612 TOP2AP11388 1531 aaKnown RBP10.67□□□□□ -0.7
SYNE2-220ENST00000555612 ATAD2BQ9ULI0 1458 aa10.67□□□□□ -0.7
SYNE2-220ENST00000555612 NCLP19338 710 aaKnown RBP10.67□□□□□ -0.7
SYNE2-220ENST00000555612 PKD2Q13563 968 aa10.67□□□□□ -0.7
SYNE2-220ENST00000555612 PNNQ9H307 717 aaKnown RBP10.67□□□□□ -0.7
SYNE2-220ENST00000555612 KIF3BO15066 747 aa10.67□□□□□ -0.7
SYNE2-220ENST00000555612 HDGFL2Q7Z4V5 671 aaPredicted RBP10.66□□□□□ -0.7
SYNE2-220ENST00000555612 NBR1Q14596 966 aa10.66□□□□□ -0.7
SYNE2-220ENST00000555612 CYB5RLQ6IPT4 315 aa10.66□□□□□ -0.7
SYNE2-220ENST00000555612 BICRAQ9NZM4 1560 aa10.66□□□□□ -0.7
SYNE2-220ENST00000555612 NUTM2DQ5VT03 806 aaPredicted RBP10.66□□□□□ -0.7
SYNE2-220ENST00000555612 RTF1Q92541 710 aaKnown RBP10.65□□□□□ -0.7
SYNE2-220ENST00000555612 EID1Q9Y6B2 187 aa10.65□□□□□ -0.7
SYNE2-220ENST00000555612 FOXD1Q16676 465 aa10.65□□□□□ -0.7
SYNE2-220ENST00000555612 AEBP2Q6ZN18 517 aaPredicted RBP10.64□□□□□ -0.71
SYNE2-220ENST00000555612 FGD1P98174 961 aa10.63□□□□□ -0.71
SYNE2-220ENST00000555612 ZRSR1Q15695 479 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms