RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PLCD3Q8N3E9 789 aa14.34□□□□□ -0.11
SCFD1-216ENST00000555550 ATMINO43313 823 aaPredicted RBP14.33□□□□□ -0.12
SCFD1-216ENST00000555550 FKBP8Q14318 412 aa14.33□□□□□ -0.12
SCFD1-216ENST00000555550 RASEFQ8IZ41 740 aa14.33□□□□□ -0.12
SCFD1-216ENST00000555550 ASTLQ6HA08 431 aaPredicted RBP14.32□□□□□ -0.12
SCFD1-216ENST00000555550 KIF12Q96FN5 646 aa14.32□□□□□ -0.12
SCFD1-216ENST00000555550 OTUD5Q96G74 571 aa14.32□□□□□ -0.12
SCFD1-216ENST00000555550 MAP3K13O43283 966 aa14.26□□□□□ -0.13
SCFD1-216ENST00000555550 METRNQ9UJH8 293 aa14.26□□□□□ -0.13
SCFD1-216ENST00000555550 TRPC6Q9Y210 931 aa14.25□□□□□ -0.13
SCFD1-216ENST00000555550 ATN1P54259 1190 aaPredicted RBP14.23□□□□□ -0.13
SCFD1-216ENST00000555550 SLC39A7Q92504 469 aa14.22□□□□□ -0.13
SCFD1-216ENST00000555550 C7P10643 843 aa14.21□□□□□ -0.13
SCFD1-216ENST00000555550 POTEJP0CG39 1038 aa14.17□□□□□ -0.14
SCFD1-216ENST00000555550 NUBP1P53384 320 aa14.17□□□□□ -0.14
SCFD1-216ENST00000555550 BMP2KQ9NSY1 1161 aaPredicted RBP14.17□□□□□ -0.14
SCFD1-216ENST00000555550 ZBTB47Q9UFB7 747 aaPredicted RBP14.13□□□□□ -0.15
SCFD1-216ENST00000555550 TIE1P35590 1138 aa14.09□□□□□ -0.15
SCFD1-216ENST00000555550 POTEFA5A3E0 1075 aa14.08□□□□□ -0.16
SCFD1-216ENST00000555550 PCDHB13Q9Y5F0 798 aa14.08□□□□□ -0.16
SCFD1-216ENST00000555550 TTLL13PA6NNM8 815 aa14.06□□□□□ -0.16
SCFD1-216ENST00000555550 FAM212AQ96EL1 285 aa14.03□□□□□ -0.16
SCFD1-216ENST00000555550 IFNL1Q8IU54 200 aa14.01□□□□□ -0.17
SCFD1-216ENST00000555550 SGIP1Q9BQI5 828 aa14.01□□□□□ -0.17
SCFD1-216ENST00000555550 MAMSTRQ6ZN01 415 aa14□□□□□ -0.17
SCFD1-216ENST00000555550 COLQQ9Y215 455 aaPredicted RBP14□□□□□ -0.17
SCFD1-216ENST00000555550 DCAF8Q5TAQ9 597 aa13.98□□□□□ -0.17
SCFD1-216ENST00000555550 FBXO3Q9UK99 471 aa13.98□□□□□ -0.17
SCFD1-216ENST00000555550 TRIM35Q9UPQ4 493 aa13.98□□□□□ -0.17
SCFD1-216ENST00000555550 SEC24BO95487 1268 aa13.96□□□□□ -0.17
SCFD1-216ENST00000555550 PLSCR2Q9NRY7 297 aa13.95□□□□□ -0.18
SCFD1-216ENST00000555550 POTEMA6NI47 508 aa13.94□□□□□ -0.18
SCFD1-216ENST00000555550 SCUBE2Q9NQ36 999 aa13.94□□□□□ -0.18
SCFD1-216ENST00000555550 PYGBP11216 843 aa13.92□□□□□ -0.18
SCFD1-216ENST00000555550 POTEGQ6S5H5 508 aa13.91□□□□□ -0.18
SCFD1-216ENST00000555550 TMEM106CQ9BVX2 250 aa13.91□□□□□ -0.18
SCFD1-216ENST00000555550 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
SCFD1-216ENST00000555550 FAM163AQ96GL9 167 aaPredicted RBP13.88□□□□□ -0.19
SCFD1-216ENST00000555550 IER5LQ5T953 404 aa13.86□□□□□ -0.19
SCFD1-216ENST00000555550 VASPP50552 380 aaPredicted RBP13.85□□□□□ -0.19
SCFD1-216ENST00000555550 PCDHB8Q9UN66 801 aa13.84□□□□□ -0.19
SCFD1-216ENST00000555550 LCE2DQ5TA82 110 aaPredicted RBP13.81□□□□□ -0.2
SCFD1-216ENST00000555550 PLCG2P16885 1265 aa13.75□□□□□ -0.21
SCFD1-216ENST00000555550 IRX5P78411 483 aaPredicted RBP13.74□□□□□ -0.21
SCFD1-216ENST00000555550 GSE1Q14687 1217 aa13.72□□□□□ -0.21
SCFD1-216ENST00000555550 SLAIN1Q8ND83 568 aa13.69□□□□□ -0.22
SCFD1-216ENST00000555550 OCEL1Q9H607 264 aa13.68□□□□□ -0.22
SCFD1-216ENST00000555550 IFNLR1Q8IU57 520 aaPredicted RBP13.65□□□□□ -0.22
SCFD1-216ENST00000555550 ZNF467Q7Z7K2 595 aaPredicted RBP13.63□□□□□ -0.23
SCFD1-216ENST00000555550 PCDH10Q9P2E7 1040 aa13.63□□□□□ -0.23
SCFD1-216ENST00000555550 CHRM1P11229 460 aaPredicted RBP13.62□□□□□ -0.23
SCFD1-216ENST00000555550 CIZ1Q9ULV3 898 aaPredicted RBP13.59□□□□□ -0.23
SCFD1-216ENST00000555550 PSEN1P49768 467 aa13.58□□□□□ -0.24
SCFD1-216ENST00000555550 SPOCK2Q92563 424 aa13.58□□□□□ -0.24
SCFD1-216ENST00000555550 GOLGA2Q08379 1002 aa13.56□□□□□ -0.24
SCFD1-216ENST00000555550 ST18O60284 1047 aa13.55□□□□□ -0.24
SCFD1-216ENST00000555550 MKRN3Q13064 507 aaKnown RBP13.54□□□□□ -0.24
SCFD1-216ENST00000555550 PDCD7Q8N8D1 485 aaKnown RBP13.53□□□□□ -0.24
SCFD1-216ENST00000555550 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.52□□□□□ -0.25
SCFD1-216ENST00000555550 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.49□□□□□ -0.252e-7■■□□□ 12.9
SCFD1-216ENST00000555550 CDAN1Q8IWY9 1227 aa13.48□□□□□ -0.25
SCFD1-216ENST00000555550 PDAP1Q13442 181 aaKnown RBP13.47□□□□□ -0.25
SCFD1-216ENST00000555550 DPY19L2Q6NUT2 758 aa13.43□□□□□ -0.26
SCFD1-216ENST00000555550 L3MBTL3Q96JM7 780 aaPredicted RBP13.43□□□□□ -0.26
SCFD1-216ENST00000555550 CABP2Q9NPB3 220 aa13.43□□□□□ -0.26
SCFD1-216ENST00000555550 C3orf67Q6ZVT6 689 aa13.41□□□□□ -0.26
SCFD1-216ENST00000555550 SNPHO15079 494 aa13.38□□□□□ -0.27
SCFD1-216ENST00000555550 MARVELD3Q96A59 401 aa13.37□□□□□ -0.27
SCFD1-216ENST00000555550 ILDR1Q86SU0 546 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-216ENST00000555550 TMEM121BQ9BXQ6 578 aaPredicted RBP13.32□□□□□ -0.28
SCFD1-216ENST00000555550 EFCAB3Q8N7B9 438 aa13.27□□□□□ -0.29
SCFD1-216ENST00000555550 BOLA1Q9Y3E2 137 aa13.26□□□□□ -0.29
SCFD1-216ENST00000555550 G3V3G9 751 aa13.25□□□□□ -0.29
SCFD1-216ENST00000555550 TRIM41Q8WV44 630 aa13.25□□□□□ -0.29
SCFD1-216ENST00000555550 EMP3P54852 163 aa13.2□□□□□ -0.3
SCFD1-216ENST00000555550 RNF25Q96BH1 459 aaPredicted RBP13.18□□□□□ -0.3
SCFD1-216ENST00000555550 POTEB3A0JP26 581 aa13.16□□□□□ -0.3
SCFD1-216ENST00000555550 RIOK3O14730 519 aaKnown RBP13.16□□□□□ -0.3
SCFD1-216ENST00000555550 POTEBQ6S5H4 581 aa13.16□□□□□ -0.3
SCFD1-216ENST00000555550 FAM205CA6NFA0 338 aa13.15□□□□□ -0.3
SCFD1-216ENST00000555550 SPNS2Q8IVW8 549 aa13.15□□□□□ -0.3
SCFD1-216ENST00000555550 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.14□□□□□ -0.31
SCFD1-216ENST00000555550 ZFP91Q96JP5 570 aaPredicted RBP13.14□□□□□ -0.31
SCFD1-216ENST00000555550 HOXB3P14651 431 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-216ENST00000555550 HS3ST6Q96QI5 342 aa13.12□□□□□ -0.31
SCFD1-216ENST00000555550 MMRN1Q13201 1228 aa13.11□□□□□ -0.31
SCFD1-216ENST00000555550 VGFO15240 615 aaPredicted RBP13.08□□□□□ -0.32
SCFD1-216ENST00000555550 PHF8Q9UPP1 1060 aa13.08□□□□□ -0.32
SCFD1-216ENST00000555550 SOX12O15370 315 aa13.07□□□□□ -0.32
SCFD1-216ENST00000555550 MS4A4AQ96JQ5 239 aa13.07□□□□□ -0.32
SCFD1-216ENST00000555550 TMEM92Q6UXU6 159 aa13.06□□□□□ -0.32
SCFD1-216ENST00000555550 MICALL2Q8IY33 904 aa13.06□□□□□ -0.32
SCFD1-216ENST00000555550 ZNF710Q8N1W2 664 aa13.06□□□□□ -0.32
SCFD1-216ENST00000555550 KRTAP3-3Q9BYR6 98 aa13.04□□□□□ -0.32
SCFD1-216ENST00000555550 KRTAP3-2Q9BYR7 98 aa13.04□□□□□ -0.32
SCFD1-216ENST00000555550 DOK7Q18PE1 504 aa13.02□□□□□ -0.33
SCFD1-216ENST00000555550 HOXB1P14653 301 aaPredicted RBP13.01□□□□□ -0.33
SCFD1-216ENST00000555550 BCL11BQ9C0K0 894 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-216ENST00000555550 ERBB3P21860 1342 aa12.96□□□□□ -0.33
SCFD1-216ENST00000555550 STK24Q9Y6E0 443 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms