RNA–Protein interactions for RNA: ENST00000555541.1

SNX6-204, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-204ENST00000555541 CCDC61Q9Y6R9 512 aa15.22■□□□□ 0.03
SNX6-204ENST00000555541 METRNQ9UJH8 293 aa15.2■□□□□ 0.02
SNX6-204ENST00000555541 C7P10643 843 aa15.17■□□□□ 0.02
SNX6-204ENST00000555541 PLSCR2Q9NRY7 297 aa15.17■□□□□ 0.02
SNX6-204ENST00000555541 SLC39A7Q92504 469 aa15.16■□□□□ 0.02
SNX6-204ENST00000555541 KIF12Q96FN5 646 aa15.14■□□□□ 0.01
SNX6-204ENST00000555541 TSPYL2Q9H2G4 693 aaPredicted RBP15.14■□□□□ 0.01
SNX6-204ENST00000555541 POTEMA6NI47 508 aa15.11■□□□□ 0.01
SNX6-204ENST00000555541 ATN1P54259 1190 aaPredicted RBP15.11■□□□□ 0.01
SNX6-204ENST00000555541 POTEFA5A3E0 1075 aa15.07■□□□□ 0
SNX6-204ENST00000555541 POTEGQ6S5H5 508 aa15.07■□□□□ 0
SNX6-204ENST00000555541 TRPC6Q9Y210 931 aa15.07■□□□□ 0
SNX6-204ENST00000555541 LCE2DQ5TA82 110 aaPredicted RBP15.05■□□□□ -0
SNX6-204ENST00000555541 BMP2KQ9NSY1 1161 aaPredicted RBP15.04■□□□□ -0
SNX6-204ENST00000555541 RASEFQ8IZ41 740 aa15.02■□□□□ -0
SNX6-204ENST00000555541 MAP3K13O43283 966 aa15□□□□□ -0.01
SNX6-204ENST00000555541 MAMSTRQ6ZN01 415 aa14.98□□□□□ -0.01
SNX6-204ENST00000555541 TIE1P35590 1138 aa14.95□□□□□ -0.02
SNX6-204ENST00000555541 MIER1Q8N108 512 aa14.92□□□□□ -0.02
SNX6-204ENST00000555541 PCDH10Q9P2E7 1040 aa14.89□□□□□ -0.03
SNX6-204ENST00000555541 TTLL13PA6NNM8 815 aa14.88□□□□□ -0.03
SNX6-204ENST00000555541 COLQQ9Y215 455 aaPredicted RBP14.88□□□□□ -0.03
SNX6-204ENST00000555541 SCUBE2Q9NQ36 999 aa14.86□□□□□ -0.03
SNX6-204ENST00000555541 PLEKHG5O94827 1062 aa14.83□□□□□ -0.04
SNX6-204ENST00000555541 NUBP1P53384 320 aa14.83□□□□□ -0.04
SNX6-204ENST00000555541 SGIP1Q9BQI5 828 aa14.82□□□□□ -0.04
SNX6-204ENST00000555541 FAM163AQ96GL9 167 aaPredicted RBP14.78□□□□□ -0.04
SNX6-204ENST00000555541 IER5LQ5T953 404 aa14.75□□□□□ -0.05
SNX6-204ENST00000555541 TRIM35Q9UPQ4 493 aa14.75□□□□□ -0.05
SNX6-204ENST00000555541 PLCD3Q8N3E9 789 aa14.73□□□□□ -0.05
SNX6-204ENST00000555541 PCDHB13Q9Y5F0 798 aa14.73□□□□□ -0.05
SNX6-204ENST00000555541 IFNL1Q8IU54 200 aa14.72□□□□□ -0.05
SNX6-204ENST00000555541 SEC24BO95487 1268 aa14.68□□□□□ -0.06
SNX6-204ENST00000555541 ZBTB47Q9UFB7 747 aaPredicted RBP14.65□□□□□ -0.06
SNX6-204ENST00000555541 IRX5P78411 483 aaPredicted RBP14.59□□□□□ -0.07
SNX6-204ENST00000555541 TMEM106CQ9BVX2 250 aa14.59□□□□□ -0.07
SNX6-204ENST00000555541 FAM212AQ96EL1 285 aa14.58□□□□□ -0.08
SNX6-204ENST00000555541 SLAIN1Q8ND83 568 aa14.52□□□□□ -0.09
SNX6-204ENST00000555541 ST18O60284 1047 aa14.51□□□□□ -0.09
SNX6-204ENST00000555541 FKBP8Q14318 412 aa14.51□□□□□ -0.09
SNX6-204ENST00000555541 CDAN1Q8IWY9 1227 aa14.51□□□□□ -0.09
SNX6-204ENST00000555541 PLCG2P16885 1265 aa14.48□□□□□ -0.09
SNX6-204ENST00000555541 PYGBP11216 843 aa14.44□□□□□ -0.1
SNX6-204ENST00000555541 OCEL1Q9H607 264 aa14.43□□□□□ -0.1
SNX6-204ENST00000555541 PCDHB8Q9UN66 801 aa14.4□□□□□ -0.1
SNX6-204ENST00000555541 DCAF8Q5TAQ9 597 aa14.39□□□□□ -0.11
SNX6-204ENST00000555541 PDCD7Q8N8D1 485 aaKnown RBP14.33□□□□□ -0.12
SNX6-204ENST00000555541 TMEM121BQ9BXQ6 578 aaPredicted RBP14.31□□□□□ -0.12
SNX6-204ENST00000555541 FBXO3Q9UK99 471 aa14.28□□□□□ -0.12
SNX6-204ENST00000555541 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.26□□□□□ -0.13
SNX6-204ENST00000555541 CHRM1P11229 460 aaPredicted RBP14.24□□□□□ -0.13
SNX6-204ENST00000555541 SNPHO15079 494 aa14.22□□□□□ -0.13
SNX6-204ENST00000555541 ZNF467Q7Z7K2 595 aaPredicted RBP14.21□□□□□ -0.13
SNX6-204ENST00000555541 ILDR1Q86SU0 546 aaPredicted RBP14.21□□□□□ -0.13
SNX6-204ENST00000555541 SPNS2Q8IVW8 549 aa14.21□□□□□ -0.13
SNX6-204ENST00000555541 VASPP50552 380 aaPredicted RBP14.2□□□□□ -0.14
SNX6-204ENST00000555541 MMRN1Q13201 1228 aa14.19□□□□□ -0.14
SNX6-204ENST00000555541 GSE1Q14687 1217 aa14.19□□□□□ -0.14
SNX6-204ENST00000555541 MARVELD3Q96A59 401 aa14.19□□□□□ -0.14
SNX6-204ENST00000555541 PSEN1P49768 467 aa14.12□□□□□ -0.15
SNX6-204ENST00000555541 POTEB3A0JP26 581 aa14.11□□□□□ -0.15
SNX6-204ENST00000555541 MKRN3Q13064 507 aaKnown RBP14.11□□□□□ -0.15
SNX6-204ENST00000555541 POTEBQ6S5H4 581 aa14.11□□□□□ -0.15
SNX6-204ENST00000555541 L3MBTL3Q96JM7 780 aaPredicted RBP14.11□□□□□ -0.15
SNX6-204ENST00000555541 KLHL34Q8N239 644 aa14.09□□□□□ -0.15
SNX6-204ENST00000555541 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.09□□□□□ -0.157e-7■□□□□ 9.5
SNX6-204ENST00000555541 C3orf67Q6ZVT6 689 aa14.08□□□□□ -0.16
SNX6-204ENST00000555541 DPY19L2Q6NUT2 758 aa14.05□□□□□ -0.16
SNX6-204ENST00000555541 KRTAP3-3Q9BYR6 98 aa14.05□□□□□ -0.16
SNX6-204ENST00000555541 KRTAP3-2Q9BYR7 98 aa14.05□□□□□ -0.16
SNX6-204ENST00000555541 GOLGA2Q08379 1002 aa14.04□□□□□ -0.16
SNX6-204ENST00000555541 PDAP1Q13442 181 aaKnown RBP14.02□□□□□ -0.17
SNX6-204ENST00000555541 EMP3P54852 163 aa14.01□□□□□ -0.17
SNX6-204ENST00000555541 HS3ST6Q96QI5 342 aa13.99□□□□□ -0.17
SNX6-204ENST00000555541 HOXB3P14651 431 aaPredicted RBP13.98□□□□□ -0.17
SNX6-204ENST00000555541 IFNLR1Q8IU57 520 aaPredicted RBP13.98□□□□□ -0.17
SNX6-204ENST00000555541 FAM205CA6NFA0 338 aa13.93□□□□□ -0.18
SNX6-204ENST00000555541 CABP2Q9NPB3 220 aa13.93□□□□□ -0.18
SNX6-204ENST00000555541 BOLA1Q9Y3E2 137 aa13.92□□□□□ -0.18
SNX6-204ENST00000555541 SPOCK2Q92563 424 aa13.91□□□□□ -0.18
SNX6-204ENST00000555541 HOXB1P14653 301 aaPredicted RBP13.83□□□□□ -0.2
SNX6-204ENST00000555541 CIZ1Q9ULV3 898 aaPredicted RBP13.83□□□□□ -0.2
SNX6-204ENST00000555541 EFCAB3Q8N7B9 438 aa13.77□□□□□ -0.21
SNX6-204ENST00000555541 TMEM92Q6UXU6 159 aa13.75□□□□□ -0.21
SNX6-204ENST00000555541 G3V3G9 751 aa13.73□□□□□ -0.21
SNX6-204ENST00000555541 DOK7Q18PE1 504 aa13.72□□□□□ -0.21
SNX6-204ENST00000555541 ZNF710Q8N1W2 664 aa13.69□□□□□ -0.22
SNX6-204ENST00000555541 MICALL2Q8IY33 904 aa13.68□□□□□ -0.22
SNX6-204ENST00000555541 TRIM41Q8WV44 630 aa13.68□□□□□ -0.22
SNX6-204ENST00000555541 MS4A4AQ96JQ5 239 aa13.67□□□□□ -0.22
SNX6-204ENST00000555541 ERBB3P21860 1342 aa13.66□□□□□ -0.22
SNX6-204ENST00000555541 RNF25Q96BH1 459 aaPredicted RBP13.65□□□□□ -0.22
SNX6-204ENST00000555541 GPR153Q6NV75 609 aa13.63□□□□□ -0.23
SNX6-204ENST00000555541 VARS2Q5ST30 1063 aaKnown RBP13.62□□□□□ -0.23
SNX6-204ENST00000555541 ZSWIM6Q9HCJ5 1215 aa13.62□□□□□ -0.23
SNX6-204ENST00000555541 SOX12O15370 315 aa13.6□□□□□ -0.23
SNX6-204ENST00000555541 RIMBP2O15034 1052 aa13.58□□□□□ -0.24
SNX6-204ENST00000555541 ZNF687Q8N1G0 1237 aa13.57□□□□□ -0.24
SNX6-204ENST00000555541 RIOK3O14730 519 aaKnown RBP13.55□□□□□ -0.24
SNX6-204ENST00000555541 PHF8Q9UPP1 1060 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms