RNA–Protein interactions for RNA: ENST00000555506.1

KTN1-222, Transcript of kinectin 1, human

TSL 1 (best)

Gene KTN1, Length 1,464 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KTN1-222	ENST00000555506	FKBP8	Q14318	412 aa		12.18	□□□□□ -0.46
KTN1-222	ENST00000555506	METRN	Q9UJH8	293 aa		12.18	□□□□□ -0.46
KTN1-222	ENST00000555506	SCUBE2	Q9NQ36	999 aa		12.16	□□□□□ -0.46
KTN1-222	ENST00000555506	C7	P10643	843 aa		12.14	□□□□□ -0.47
KTN1-222	ENST00000555506	SLC39A7	Q92504	469 aa		12.12	□□□□□ -0.47
KTN1-222	ENST00000555506	PROM2	Q8N271	834 aa		12.08	□□□□□ -0.48
KTN1-222	ENST00000555506	SPNS2	Q8IVW8	549 aa		12.07	□□□□□ -0.48
KTN1-222	ENST00000555506	STAG3	Q9UJ98	1225 aa		12.06	□□□□□ -0.48
KTN1-222	ENST00000555506	PHF12	Q96QT6	1004 aa		12.04	□□□□□ -0.48
KTN1-222	ENST00000555506	ASTL	Q6HA08	431 aa	Predicted RBP	12.03	□□□□□ -0.48
KTN1-222	ENST00000555506	CREBZF	Q9NS37	354 aa		12.03	□□□□□ -0.48
KTN1-222	ENST00000555506	NPM1	P06748	294 aa	Known RBP eCLIP	11.99	□□□□□ -0.49
KTN1-222	ENST00000555506	ATMIN	O43313	823 aa	Predicted RBP	11.96	□□□□□ -0.49
KTN1-222	ENST00000555506	MS4A3	Q96HJ5	214 aa		11.86	□□□□□ -0.51
KTN1-222	ENST00000555506	ST18	O60284	1047 aa		11.83	□□□□□ -0.52
KTN1-222	ENST00000555506	POTEF	A5A3E0	1075 aa		11.76	□□□□□ -0.53
KTN1-222	ENST00000555506	ATN1	P54259	1190 aa	Predicted RBP	11.76	□□□□□ -0.53
KTN1-222	ENST00000555506	FBXO3	Q9UK99	471 aa		11.72	□□□□□ -0.53
KTN1-222	ENST00000555506	SEC24B	O95487	1268 aa		11.7	□□□□□ -0.54
KTN1-222	ENST00000555506	MNX1	P50219	401 aa	Predicted RBP	11.66	□□□□□ -0.54
KTN1-222	ENST00000555506	MIER1	Q8N108	512 aa		11.64	□□□□□ -0.55
KTN1-222	ENST00000555506	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.64	□□□□□ -0.55
KTN1-222	ENST00000555506	VASP	P50552	380 aa	Predicted RBP	11.62	□□□□□ -0.55
KTN1-222	ENST00000555506	PLCD3	Q8N3E9	789 aa		11.61	□□□□□ -0.55
KTN1-222	ENST00000555506	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.61	□□□□□ -0.55
KTN1-222	ENST00000555506	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.61	□□□□□ -0.55
KTN1-222	ENST00000555506	TIE1	P35590	1138 aa		11.6	□□□□□ -0.55
KTN1-222	ENST00000555506	SLAIN1	Q8ND83	568 aa		11.58	□□□□□ -0.56
KTN1-222	ENST00000555506	KIF12	Q96FN5	646 aa		11.56	□□□□□ -0.56
KTN1-222	ENST00000555506	PLEKHG5	O94827	1062 aa		11.55	□□□□□ -0.56
KTN1-222	ENST00000555506	CCDC61	Q9Y6R9	512 aa		11.55	□□□□□ -0.56
KTN1-222	ENST00000555506	IER5L	Q5T953	404 aa		11.52	□□□□□ -0.56
KTN1-222	ENST00000555506	COLQ	Q9Y215	455 aa	Predicted RBP	11.52	□□□□□ -0.56
KTN1-222	ENST00000555506	SNPH	O15079	494 aa		11.49	□□□□□ -0.57
KTN1-222	ENST00000555506	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.47	□□□□□ -0.57
KTN1-222	ENST00000555506	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.45	□□□□□ -0.58
KTN1-222	ENST00000555506	TTLL13P	A6NNM8	815 aa		11.44	□□□□□ -0.58
KTN1-222	ENST00000555506	MAP3K13	O43283	966 aa		11.44	□□□□□ -0.58
KTN1-222	ENST00000555506	TRPC6	Q9Y210	931 aa		11.44	□□□□□ -0.58
KTN1-222	ENST00000555506	KLHL34	Q8N239	644 aa		11.43	□□□□□ -0.58
KTN1-222	ENST00000555506	MARVELD3	Q96A59	401 aa		11.43	□□□□□ -0.58
KTN1-222	ENST00000555506	KRTAP3-3	Q9BYR6	98 aa		11.42	□□□□□ -0.58
KTN1-222	ENST00000555506	KRTAP3-2	Q9BYR7	98 aa		11.42	□□□□□ -0.58
KTN1-222	ENST00000555506	TRIM35	Q9UPQ4	493 aa		11.4	□□□□□ -0.58
KTN1-222	ENST00000555506	NUBP1	P53384	320 aa		11.39	□□□□□ -0.59
KTN1-222	ENST00000555506	RASEF	Q8IZ41	740 aa		11.38	□□□□□ -0.59
KTN1-222	ENST00000555506	PLCG2	P16885	1265 aa		11.37	□□□□□ -0.59
KTN1-222	ENST00000555506	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.36	□□□□□ -0.59
KTN1-222	ENST00000555506	SGIP1	Q9BQI5	828 aa		11.34	□□□□□ -0.59
KTN1-222	ENST00000555506	RTN4	Q9NQC3	1192 aa	Known RBP	11.34	□□□□□ -0.59
KTN1-222	ENST00000555506	SPOCK2	Q92563	424 aa		11.32	□□□□□ -0.6
KTN1-222	ENST00000555506	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.29	□□□□□ -0.6
KTN1-222	ENST00000555506	EMP3	P54852	163 aa		11.27	□□□□□ -0.6
KTN1-222	ENST00000555506	FAM212A	Q96EL1	285 aa		11.26	□□□□□ -0.61
KTN1-222	ENST00000555506	PCDHB13	Q9Y5F0	798 aa		11.26	□□□□□ -0.61
KTN1-222	ENST00000555506	HS3ST6	Q96QI5	342 aa		11.25	□□□□□ -0.61
KTN1-222	ENST00000555506	DCAF8	Q5TAQ9	597 aa		11.24	□□□□□ -0.61
KTN1-222	ENST00000555506	POTEB3	A0JP26	581 aa		11.23	□□□□□ -0.61
KTN1-222	ENST00000555506	POTEB	Q6S5H4	581 aa		11.23	□□□□□ -0.61
KTN1-222	ENST00000555506	RNF166	Q96A37	237 aa	Predicted RBP	11.23	□□□□□ -0.61
KTN1-222	ENST00000555506	TMEM106C	Q9BVX2	250 aa		11.2	□□□□□ -0.62
KTN1-222	ENST00000555506	OCEL1	Q9H607	264 aa		11.19	□□□□□ -0.62
KTN1-222	ENST00000555506	IRX5	P78411	483 aa	Predicted RBP	11.18	□□□□□ -0.62
KTN1-222	ENST00000555506	GSE1	Q14687	1217 aa		11.18	□□□□□ -0.62
KTN1-222	ENST00000555506	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.17	□□□□□ -0.62
KTN1-222	ENST00000555506	FAM205C	A6NFA0	338 aa		11.16	□□□□□ -0.62
KTN1-222	ENST00000555506	PYGB	P11216	843 aa		11.14	□□□□□ -0.63
KTN1-222	ENST00000555506	IFNL1	Q8IU54	200 aa		11.1	□□□□□ -0.63
KTN1-222	ENST00000555506	C3orf67	Q6ZVT6	689 aa		11.08	□□□□□ -0.64
KTN1-222	ENST00000555506	CHRM1	P11229	460 aa	Predicted RBP	11.06	□□□□□ -0.64
KTN1-222	ENST00000555506	MYT1L	Q9UL68	1186 aa		11.06	□□□□□ -0.64
KTN1-222	ENST00000555506	PKD2	Q13563	968 aa		11.03	□□□□□ -0.64
KTN1-222	ENST00000555506	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.01	□□□□□ -0.65
KTN1-222	ENST00000555506	SLC24A1	O60721	1099 aa		11	□□□□□ -0.65
KTN1-222	ENST00000555506	TRIM41	Q8WV44	630 aa		11	□□□□□ -0.65
KTN1-222	ENST00000555506	PCDHB8	Q9UN66	801 aa		11	□□□□□ -0.65
KTN1-222	ENST00000555506	ECM2	O94769	699 aa	Predicted RBP	10.96	□□□□□ -0.65
KTN1-222	ENST00000555506	RNF25	Q96BH1	459 aa	Predicted RBP	10.95	□□□□□ -0.66
KTN1-222	ENST00000555506	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.94	□□□□□ -0.66
KTN1-222	ENST00000555506	GOLGA2	Q08379	1002 aa		10.9	□□□□□ -0.66
KTN1-222	ENST00000555506	RGL2	O15211	777 aa		10.89	□□□□□ -0.67
KTN1-222	ENST00000555506	RIOK3	O14730	519 aa	Known RBP	10.87	□□□□□ -0.67
KTN1-222	ENST00000555506	ERBB3	P21860	1342 aa		10.87	□□□□□ -0.67
KTN1-222	ENST00000555506	PSEN1	P49768	467 aa		10.87	□□□□□ -0.67
KTN1-222	ENST00000555506	ZNF710	Q8N1W2	664 aa		10.87	□□□□□ -0.67
KTN1-222	ENST00000555506	PTGER2	P43116	358 aa		10.86	□□□□□ -0.67
KTN1-222	ENST00000555506	MKRN3	Q13064	507 aa	Known RBP	10.86	□□□□□ -0.67
KTN1-222	ENST00000555506	PDAP1	Q13442	181 aa	Known RBP	10.85	□□□□□ -0.67
KTN1-222	ENST00000555506	PDCD7	Q8N8D1	485 aa	Known RBP	10.84	□□□□□ -0.67
KTN1-222	ENST00000555506	HOXB1	P14653	301 aa	Predicted RBP	10.81	□□□□□ -0.68
KTN1-222	ENST00000555506	VGF	O15240	615 aa	Predicted RBP	10.81	□□□□□ -0.68
KTN1-222	ENST00000555506	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.8	□□□□□ -0.68
KTN1-222	ENST00000555506		G3V3G9	751 aa		10.8	□□□□□ -0.68
KTN1-222	ENST00000555506	ZFP91	Q96JP5	570 aa	Predicted RBP	10.8	□□□□□ -0.68
KTN1-222	ENST00000555506	PLA2G2E	Q9NZK7	142 aa		10.8	□□□□□ -0.68
KTN1-222	ENST00000555506	DOK7	Q18PE1	504 aa		10.78	□□□□□ -0.68
KTN1-222	ENST00000555506	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.77	□□□□□ -0.69	2e-9	■■■□□ 18.4
KTN1-222	ENST00000555506	RIMBP2	O15034	1052 aa		10.76	□□□□□ -0.69
KTN1-222	ENST00000555506	CABP2	Q9NPB3	220 aa		10.74	□□□□□ -0.69
KTN1-222	ENST00000555506	TAOK2	Q9UL54	1235 aa		10.73	□□□□□ -0.69

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