RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 RASEFQ8IZ41 740 aa13.01□□□□□ -0.33
CKS1BP1-201ENST00000555221 CHRM1P11229 460 aaPredicted RBP12.99□□□□□ -0.33
CKS1BP1-201ENST00000555221 RIOK3O14730 519 aaKnown RBP12.98□□□□□ -0.33
CKS1BP1-201ENST00000555221 PAXIP1Q6ZW49 1069 aaPredicted RBP12.97□□□□□ -0.33
CKS1BP1-201ENST00000555221 RNF25Q96BH1 459 aaPredicted RBP12.97□□□□□ -0.33
CKS1BP1-201ENST00000555221 HS6ST3Q8IZP7 471 aa12.96□□□□□ -0.33
CKS1BP1-201ENST00000555221 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
CKS1BP1-201ENST00000555221 SPRYD3Q8NCJ5 442 aa12.94□□□□□ -0.34
CKS1BP1-201ENST00000555221 CFAP44Q96MT7 982 aa12.94□□□□□ -0.34
CKS1BP1-201ENST00000555221 FARP1Q9Y4F1 1045 aaPredicted RBP12.93□□□□□ -0.34
CKS1BP1-201ENST00000555221 VSIG10Q8N0Z9 540 aa12.9□□□□□ -0.34
CKS1BP1-201ENST00000555221 VGFO15240 615 aaPredicted RBP12.89□□□□□ -0.35
CKS1BP1-201ENST00000555221 PRKAR2AP13861 404 aaKnown RBP12.89□□□□□ -0.35
CKS1BP1-201ENST00000555221 FXR2P51116 673 aaKnown RBP eCLIP12.88□□□□□ -0.35
CKS1BP1-201ENST00000555221 DNAJC5Q9H3Z4 198 aa12.88□□□□□ -0.35
CKS1BP1-201ENST00000555221 PYGBP11216 843 aa12.86□□□□□ -0.35
CKS1BP1-201ENST00000555221 CHRDL2Q6WN34 429 aa12.84□□□□□ -0.35
CKS1BP1-201ENST00000555221 SGIP1Q9BQI5 828 aa12.83□□□□□ -0.36
CKS1BP1-201ENST00000555221 TSPYL2Q9H2G4 693 aaPredicted RBP12.83□□□□□ -0.36
CKS1BP1-201ENST00000555221 STK25O00506 426 aa12.82□□□□□ -0.36
CKS1BP1-201ENST00000555221 PAK3O75914 559 aaPredicted RBP12.76□□□□□ -0.37
CKS1BP1-201ENST00000555221 ZNF467Q7Z7K2 595 aaPredicted RBP12.76□□□□□ -0.37
CKS1BP1-201ENST00000555221 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.75□□□□□ -0.37
CKS1BP1-201ENST00000555221 PIP4P2Q8N4L2 257 aa12.75□□□□□ -0.37
CKS1BP1-201ENST00000555221 ZFP91Q96JP5 570 aaPredicted RBP12.75□□□□□ -0.37
CKS1BP1-201ENST00000555221 BCL11BQ9C0K0 894 aaPredicted RBP12.74□□□□□ -0.37
CKS1BP1-201ENST00000555221 STK24Q9Y6E0 443 aa12.73□□□□□ -0.37
CKS1BP1-201ENST00000555221 NKX1-1Q15270 411 aaPredicted RBP12.72□□□□□ -0.37
CKS1BP1-201ENST00000555221 TSHZ2Q9NRE2 1034 aa12.72□□□□□ -0.37
CKS1BP1-201ENST00000555221 CCDC61Q9Y6R9 512 aa12.72□□□□□ -0.37
CKS1BP1-201ENST00000555221 RYDENQ9NUL5 291 aaKnown RBP12.7□□□□□ -0.38
CKS1BP1-201ENST00000555221 KDM2AQ9Y2K7 1162 aa12.7□□□□□ -0.38
CKS1BP1-201ENST00000555221 PDAP1Q13442 181 aaKnown RBP12.67□□□□□ -0.38
CKS1BP1-201ENST00000555221 GTPBP6O43824 516 aaPredicted RBP12.66□□□□□ -0.38
CKS1BP1-201ENST00000555221 BCANQ96GW7 911 aa12.66□□□□□ -0.38
CKS1BP1-201ENST00000555221 ZNF579Q8NAF0 562 aaKnown RBP12.65□□□□□ -0.38
CKS1BP1-201ENST00000555221 PCDHB8Q9UN66 801 aa12.62□□□□□ -0.39
CKS1BP1-201ENST00000555221 PCDHB13Q9Y5F0 798 aa12.62□□□□□ -0.39
CKS1BP1-201ENST00000555221 PSEN1P49768 467 aa12.58□□□□□ -0.4
CKS1BP1-201ENST00000555221 CD44P16070 742 aaKnown RBP12.56□□□□□ -0.4
CKS1BP1-201ENST00000555221 KIF12Q96FN5 646 aa12.56□□□□□ -0.4
CKS1BP1-201ENST00000555221 ZRANB1Q9UGI0 708 aa12.56□□□□□ -0.4
CKS1BP1-201ENST00000555221 MAP3K13O43283 966 aa12.54□□□□□ -0.4
CKS1BP1-201ENST00000555221 IFNL1Q8IU54 200 aa12.54□□□□□ -0.4
CKS1BP1-201ENST00000555221 PHF12Q96QT6 1004 aa12.45□□□□□ -0.42
CKS1BP1-201ENST00000555221 C19orf67A6NJJ6 358 aa12.42□□□□□ -0.42
CKS1BP1-201ENST00000555221 MFRPQ9BY79 579 aa12.41□□□□□ -0.42
CKS1BP1-201ENST00000555221 CABP2Q9NPB3 220 aa12.41□□□□□ -0.42
CKS1BP1-201ENST00000555221 SOX12O15370 315 aa12.4□□□□□ -0.42
CKS1BP1-201ENST00000555221 NLRP6P59044 892 aa12.39□□□□□ -0.43
CKS1BP1-201ENST00000555221 EFCAB3Q8N7B9 438 aa12.38□□□□□ -0.43
CKS1BP1-201ENST00000555221 NBR1Q14596 966 aa12.36□□□□□ -0.43
CKS1BP1-201ENST00000555221 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
CKS1BP1-201ENST00000555221 FBXO22Q8NEZ5 403 aa12.32□□□□□ -0.44
CKS1BP1-201ENST00000555221 MS4A3Q96HJ5 214 aa12.32□□□□□ -0.44
CKS1BP1-201ENST00000555221 TMEM106CQ9BVX2 250 aa12.32□□□□□ -0.44
CKS1BP1-201ENST00000555221 PHF8Q9UPP1 1060 aa12.31□□□□□ -0.44
CKS1BP1-201ENST00000555221 WDR70Q9NW82 654 aa12.29□□□□□ -0.44
CKS1BP1-201ENST00000555221 CADPS2Q86UW7 1296 aa12.27□□□□□ -0.45
CKS1BP1-201ENST00000555221 P3H3Q8IVL6 736 aa12.27□□□□□ -0.45
CKS1BP1-201ENST00000555221 TIE1P35590 1138 aa12.26□□□□□ -0.45
CKS1BP1-201ENST00000555221 CLCN6P51797 869 aa12.26□□□□□ -0.45
CKS1BP1-201ENST00000555221 PPP1R37O75864 691 aa12.25□□□□□ -0.45
CKS1BP1-201ENST00000555221 MKRN3Q13064 507 aaKnown RBP12.25□□□□□ -0.45
CKS1BP1-201ENST00000555221 TRPC6Q9Y210 931 aa12.24□□□□□ -0.45
CKS1BP1-201ENST00000555221 HAX1O00165 279 aa12.23□□□□□ -0.45
CKS1BP1-201ENST00000555221 TTLL13PA6NNM8 815 aa12.19□□□□□ -0.46
CKS1BP1-201ENST00000555221 TPRNQ4KMQ1 711 aa12.19□□□□□ -0.46
CKS1BP1-201ENST00000555221 MS4A4AQ96JQ5 239 aa12.18□□□□□ -0.46
CKS1BP1-201ENST00000555221 PRKCSHP14314 528 aaPredicted RBP12.17□□□□□ -0.46
CKS1BP1-201ENST00000555221 BMP2KQ9NSY1 1161 aaPredicted RBP12.17□□□□□ -0.46
CKS1BP1-201ENST00000555221 GALR2O43603 387 aaPredicted RBP12.15□□□□□ -0.46
CKS1BP1-201ENST00000555221 KCNV2Q8TDN2 545 aa12.13□□□□□ -0.47
CKS1BP1-201ENST00000555221 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.12□□□□□ -0.47
CKS1BP1-201ENST00000555221 TRIM35Q9UPQ4 493 aa12.11□□□□□ -0.47
CKS1BP1-201ENST00000555221 PDE4AP27815 886 aa12.1□□□□□ -0.47
CKS1BP1-201ENST00000555221 ILDR1Q86SU0 546 aaPredicted RBP12.1□□□□□ -0.47
CKS1BP1-201ENST00000555221 EVX2Q03828 476 aa12.09□□□□□ -0.47
CKS1BP1-201ENST00000555221 E2F4Q16254 413 aa12.08□□□□□ -0.48
CKS1BP1-201ENST00000555221 NCKAP5LQ9HCH0 1330 aa12.07□□□□□ -0.48
CKS1BP1-201ENST00000555221 ARHGEF1Q92888 912 aaKnown RBP12.05□□□□□ -0.48
CKS1BP1-201ENST00000555221 LARP6Q9BRS8 491 aaKnown RBP12.05□□□□□ -0.48
CKS1BP1-201ENST00000555221 CRISPLD2Q9H0B8 497 aa12.04□□□□□ -0.48
CKS1BP1-201ENST00000555221 MFSD10Q14728 455 aa12.03□□□□□ -0.48
CKS1BP1-201ENST00000555221 DDX27Q96GQ7 796 aaKnown RBP12.02□□□□□ -0.49
CKS1BP1-201ENST00000555221 ATMINO43313 823 aaPredicted RBP12.01□□□□□ -0.49
CKS1BP1-201ENST00000555221 ATN1P54259 1190 aaPredicted RBP12.01□□□□□ -0.49
CKS1BP1-201ENST00000555221 IER5LQ5T953 404 aa12.01□□□□□ -0.49
CKS1BP1-201ENST00000555221 ASTLQ6HA08 431 aaPredicted RBP12.01□□□□□ -0.49
CKS1BP1-201ENST00000555221 TULP1O00294 542 aaPredicted RBP11.98□□□□□ -0.49
CKS1BP1-201ENST00000555221 OCEL1Q9H607 264 aa11.97□□□□□ -0.49
CKS1BP1-201ENST00000555221 PDCD7Q8N8D1 485 aaKnown RBP11.96□□□□□ -0.49
CKS1BP1-201ENST00000555221 IRX5P78411 483 aaPredicted RBP11.95□□□□□ -0.5
CKS1BP1-201ENST00000555221 GPHNQ9NQX3 736 aaPredicted RBP11.95□□□□□ -0.5
CKS1BP1-201ENST00000555221 DPY19L2Q6NUT2 758 aa11.94□□□□□ -0.5
CKS1BP1-201ENST00000555221 MICALL2Q8IY33 904 aa11.94□□□□□ -0.5
CKS1BP1-201ENST00000555221 G3V3G9 751 aa11.93□□□□□ -0.5
CKS1BP1-201ENST00000555221 GABBR2O75899 941 aa11.93□□□□□ -0.5
CKS1BP1-201ENST00000555221 CAMK2BQ13554 666 aa11.92□□□□□ -0.5
CKS1BP1-201ENST00000555221 ARIH1Q9Y4X5 557 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms