RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 TSPYL2Q9H2G4 693 aaPredicted RBP18.52■□□□□ 0.56
VRK1-203ENST00000555067 METRNQ9UJH8 293 aa18.44■□□□□ 0.54
VRK1-203ENST00000555067 SLC39A7Q92504 469 aa18.43■□□□□ 0.54
VRK1-203ENST00000555067 KIF12Q96FN5 646 aa18.42■□□□□ 0.54
VRK1-203ENST00000555067 C7P10643 843 aa18.41■□□□□ 0.54
VRK1-203ENST00000555067 MIER1Q8N108 512 aa18.37■□□□□ 0.53
VRK1-203ENST00000555067 PLEKHG5O94827 1062 aa18.35■□□□□ 0.53
VRK1-203ENST00000555067 POTEJP0CG39 1038 aa18.35■□□□□ 0.53
VRK1-203ENST00000555067 ATN1P54259 1190 aaPredicted RBP18.34■□□□□ 0.53
VRK1-203ENST00000555067 RASEFQ8IZ41 740 aa18.34■□□□□ 0.53
VRK1-203ENST00000555067 MAP3K13O43283 966 aa18.28■□□□□ 0.52
VRK1-203ENST00000555067 BMP2KQ9NSY1 1161 aaPredicted RBP18.28■□□□□ 0.52
VRK1-203ENST00000555067 TRPC6Q9Y210 931 aa18.28■□□□□ 0.52
VRK1-203ENST00000555067 TIE1P35590 1138 aa18.23■□□□□ 0.51
VRK1-203ENST00000555067 POTEFA5A3E0 1075 aa18.21■□□□□ 0.51
VRK1-203ENST00000555067 MAMSTRQ6ZN01 415 aa18.21■□□□□ 0.51
VRK1-203ENST00000555067 POTEMA6NI47 508 aa18.18■□□□□ 0.5
VRK1-203ENST00000555067 PLCD3Q8N3E9 789 aa18.18■□□□□ 0.5
VRK1-203ENST00000555067 PLSCR2Q9NRY7 297 aa18.17■□□□□ 0.5
VRK1-203ENST00000555067 NUBP1P53384 320 aa18.14■□□□□ 0.49
VRK1-203ENST00000555067 POTEGQ6S5H5 508 aa18.12■□□□□ 0.49
VRK1-203ENST00000555067 SGIP1Q9BQI5 828 aa18.12■□□□□ 0.49
VRK1-203ENST00000555067 TTLL13PA6NNM8 815 aa18.11■□□□□ 0.49
VRK1-203ENST00000555067 ZBTB47Q9UFB7 747 aaPredicted RBP18.1■□□□□ 0.49
VRK1-203ENST00000555067 SCUBE2Q9NQ36 999 aa18.07■□□□□ 0.48
VRK1-203ENST00000555067 FKBP8Q14318 412 aa18.03■□□□□ 0.48
VRK1-203ENST00000555067 PCDHB13Q9Y5F0 798 aa18.03■□□□□ 0.48
VRK1-203ENST00000555067 LCE2DQ5TA82 110 aaPredicted RBP18.02■□□□□ 0.48
VRK1-203ENST00000555067 COLQQ9Y215 455 aaPredicted RBP18.01■□□□□ 0.47
VRK1-203ENST00000555067 TRIM35Q9UPQ4 493 aa17.98■□□□□ 0.47
VRK1-203ENST00000555067 IER5LQ5T953 404 aa17.97■□□□□ 0.47
VRK1-203ENST00000555067 IFNL1Q8IU54 200 aa17.96■□□□□ 0.47
VRK1-203ENST00000555067 FAM212AQ96EL1 285 aa17.94■□□□□ 0.46
VRK1-203ENST00000555067 SEC24BO95487 1268 aa17.93■□□□□ 0.46
VRK1-203ENST00000555067 PCDH10Q9P2E7 1040 aa17.93■□□□□ 0.46
VRK1-203ENST00000555067 FAM163AQ96GL9 167 aaPredicted RBP17.88■□□□□ 0.45
VRK1-203ENST00000555067 TMEM106CQ9BVX2 250 aa17.82■□□□□ 0.44
VRK1-203ENST00000555067 IRX5P78411 483 aaPredicted RBP17.74■□□□□ 0.43
VRK1-203ENST00000555067 FBXO3Q9UK99 471 aa17.74■□□□□ 0.43
VRK1-203ENST00000555067 DCAF8Q5TAQ9 597 aa17.73■□□□□ 0.43
VRK1-203ENST00000555067 PYGBP11216 843 aa17.71■□□□□ 0.43
VRK1-203ENST00000555067 PLCG2P16885 1265 aa17.69■□□□□ 0.42
VRK1-203ENST00000555067 SLAIN1Q8ND83 568 aa17.65■□□□□ 0.42
VRK1-203ENST00000555067 PCDHB8Q9UN66 801 aa17.62■□□□□ 0.41
VRK1-203ENST00000555067 OCEL1Q9H607 264 aa17.61■□□□□ 0.41
VRK1-203ENST00000555067 VASPP50552 380 aaPredicted RBP17.56■□□□□ 0.4
VRK1-203ENST00000555067 ST18O60284 1047 aa17.54■□□□□ 0.4
VRK1-203ENST00000555067 GSE1Q14687 1217 aa17.52■□□□□ 0.4
VRK1-203ENST00000555067 CDAN1Q8IWY9 1227 aa17.5■□□□□ 0.39
VRK1-203ENST00000555067 ZNF467Q7Z7K2 595 aaPredicted RBP17.48■□□□□ 0.39
VRK1-203ENST00000555067 KLHL34Q8N239 644 aa17.48■□□□□ 0.39
VRK1-203ENST00000555067 CHRM1P11229 460 aaPredicted RBP17.47■□□□□ 0.39
VRK1-203ENST00000555067 PDCD7Q8N8D1 485 aaKnown RBP17.43■□□□□ 0.38
VRK1-203ENST00000555067 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.41■□□□□ 0.38
VRK1-203ENST00000555067 TMEM121BQ9BXQ6 578 aaPredicted RBP17.36■□□□□ 0.37
VRK1-203ENST00000555067 SNPHO15079 494 aa17.34■□□□□ 0.37
VRK1-203ENST00000555067 PSEN1P49768 467 aa17.32■□□□□ 0.36
VRK1-203ENST00000555067 MKRN3Q13064 507 aaKnown RBP17.32■□□□□ 0.36
VRK1-203ENST00000555067 GOLGA2Q08379 1002 aa17.3■□□□□ 0.36
VRK1-203ENST00000555067 ILDR1Q86SU0 546 aaPredicted RBP17.29■□□□□ 0.36
VRK1-203ENST00000555067 L3MBTL3Q96JM7 780 aaPredicted RBP17.28■□□□□ 0.36
VRK1-203ENST00000555067 IFNLR1Q8IU57 520 aaPredicted RBP17.25■□□□□ 0.35
VRK1-203ENST00000555067 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.25■□□□□ 0.35
VRK1-203ENST00000555067 PDAP1Q13442 181 aaKnown RBP17.23■□□□□ 0.35
VRK1-203ENST00000555067 C3orf67Q6ZVT6 689 aa17.23■□□□□ 0.35
VRK1-203ENST00000555067 SPOCK2Q92563 424 aa17.22■□□□□ 0.35
VRK1-203ENST00000555067 MARVELD3Q96A59 401 aa17.18■□□□□ 0.34
VRK1-203ENST00000555067 CIZ1Q9ULV3 898 aaPredicted RBP17.13■□□□□ 0.33
VRK1-203ENST00000555067 DPY19L2Q6NUT2 758 aa17.12■□□□□ 0.33
VRK1-203ENST00000555067 SPNS2Q8IVW8 549 aa17.1■□□□□ 0.33
VRK1-203ENST00000555067 CABP2Q9NPB3 220 aa17.1■□□□□ 0.33
VRK1-203ENST00000555067 MMRN1Q13201 1228 aa17.07■□□□□ 0.32
VRK1-203ENST00000555067 EMP3P54852 163 aa17.04■□□□□ 0.32
VRK1-203ENST00000555067 BOLA1Q9Y3E2 137 aa17.02■□□□□ 0.32
VRK1-203ENST00000555067 POTEB3A0JP26 581 aa17■□□□□ 0.31
VRK1-203ENST00000555067 POTEBQ6S5H4 581 aa17■□□□□ 0.31
VRK1-203ENST00000555067 HS3ST6Q96QI5 342 aa16.96■□□□□ 0.31
VRK1-203ENST00000555067 HOXB3P14651 431 aaPredicted RBP16.95■□□□□ 0.3
VRK1-203ENST00000555067 TRIM41Q8WV44 630 aa16.95■□□□□ 0.3
VRK1-203ENST00000555067 KRTAP3-3Q9BYR6 98 aa16.94■□□□□ 0.3
VRK1-203ENST00000555067 KRTAP3-2Q9BYR7 98 aa16.94■□□□□ 0.3
VRK1-203ENST00000555067 G3V3G9 751 aa16.93■□□□□ 0.3
VRK1-203ENST00000555067 FAM205CA6NFA0 338 aa16.92■□□□□ 0.3
VRK1-203ENST00000555067 EFCAB3Q8N7B9 438 aa16.89■□□□□ 0.29
VRK1-203ENST00000555067 HOXB1P14653 301 aaPredicted RBP16.83■□□□□ 0.28
VRK1-203ENST00000555067 DOK7Q18PE1 504 aa16.78■□□□□ 0.28
VRK1-203ENST00000555067 RNF25Q96BH1 459 aaPredicted RBP16.77■□□□□ 0.28
VRK1-203ENST00000555067 ZNF710Q8N1W2 664 aa16.76■□□□□ 0.27
VRK1-203ENST00000555067 MICALL2Q8IY33 904 aa16.75■□□□□ 0.27
VRK1-203ENST00000555067 TMEM92Q6UXU6 159 aa16.74■□□□□ 0.27
VRK1-203ENST00000555067 RIOK3O14730 519 aaKnown RBP16.73■□□□□ 0.27
VRK1-203ENST00000555067 SOX12O15370 315 aa16.73■□□□□ 0.27
VRK1-203ENST00000555067 MS4A4AQ96JQ5 239 aa16.71■□□□□ 0.27
VRK1-203ENST00000555067 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.69■□□□□ 0.26
VRK1-203ENST00000555067 ZFP91Q96JP5 570 aaPredicted RBP16.69■□□□□ 0.26
VRK1-203ENST00000555067 VGFO15240 615 aaPredicted RBP16.67■□□□□ 0.26
VRK1-203ENST00000555067 RIMBP2O15034 1052 aa16.66■□□□□ 0.26
VRK1-203ENST00000555067 ERBB3P21860 1342 aa16.66■□□□□ 0.26
VRK1-203ENST00000555067 ZSWIM6Q9HCJ5 1215 aa16.63■□□□□ 0.25
VRK1-203ENST00000555067 PHF8Q9UPP1 1060 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms