RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CCDC61Q9Y6R9 512 aa9.79□□□□□ -0.84
VRK1-202ENST00000553683 DCAF8Q5TAQ9 597 aa9.78□□□□□ -0.84
VRK1-202ENST00000553683 TSPYL2Q9H2G4 693 aaPredicted RBP9.78□□□□□ -0.84
VRK1-202ENST00000553683 CHRM1P11229 460 aaPredicted RBP9.76□□□□□ -0.85
VRK1-202ENST00000553683 EVX2Q03828 476 aa9.76□□□□□ -0.85
VRK1-202ENST00000553683 SGIP1Q9BQI5 828 aa9.75□□□□□ -0.85
VRK1-202ENST00000553683 SP7Q8TDD2 431 aaPredicted RBP9.74□□□□□ -0.85
VRK1-202ENST00000553683 CIZ1Q9ULV3 898 aaPredicted RBP9.72□□□□□ -0.85
VRK1-202ENST00000553683 KIF12Q96FN5 646 aa9.69□□□□□ -0.86
VRK1-202ENST00000553683 AMER1Q5JTC6 1135 aaPredicted RBP9.68□□□□□ -0.86
VRK1-202ENST00000553683 PHF12Q96QT6 1004 aa9.66□□□□□ -0.86
VRK1-202ENST00000553683 PKD2Q13563 968 aa9.65□□□□□ -0.86
VRK1-202ENST00000553683 GABBR2O75899 941 aa9.64□□□□□ -0.87
VRK1-202ENST00000553683 PYGBP11216 843 aa9.63□□□□□ -0.87
VRK1-202ENST00000553683 ZNF467Q7Z7K2 595 aaPredicted RBP9.63□□□□□ -0.87
VRK1-202ENST00000553683 MAP3K13O43283 966 aa9.62□□□□□ -0.87
VRK1-202ENST00000553683 PCDHB13Q9Y5F0 798 aa9.61□□□□□ -0.87
VRK1-202ENST00000553683 ECM2O94769 699 aaPredicted RBP9.6□□□□□ -0.87
VRK1-202ENST00000553683 TAOK2Q9UL54 1235 aa9.59□□□□□ -0.87
VRK1-202ENST00000553683 MS4A3Q96HJ5 214 aa9.58□□□□□ -0.88
VRK1-202ENST00000553683 GALR2O43603 387 aaPredicted RBP9.56□□□□□ -0.88
VRK1-202ENST00000553683 IFNL1Q8IU54 200 aa9.56□□□□□ -0.88
VRK1-202ENST00000553683 RIOK3O14730 519 aaKnown RBP9.54□□□□□ -0.88
VRK1-202ENST00000553683 TIE1P35590 1138 aa9.54□□□□□ -0.88
VRK1-202ENST00000553683 RTN4Q9NQC3 1192 aaKnown RBP9.52□□□□□ -0.89
VRK1-202ENST00000553683 VGFO15240 615 aaPredicted RBP9.51□□□□□ -0.89
VRK1-202ENST00000553683 PDAP1Q13442 181 aaKnown RBP9.51□□□□□ -0.89
VRK1-202ENST00000553683 RNF25Q96BH1 459 aaPredicted RBP9.5□□□□□ -0.89
VRK1-202ENST00000553683 DCBLD2Q96PD2 775 aa9.5□□□□□ -0.89
VRK1-202ENST00000553683 PCDHB8Q9UN66 801 aa9.5□□□□□ -0.89
VRK1-202ENST00000553683 ASTLQ6HA08 431 aaPredicted RBP9.49□□□□□ -0.89
VRK1-202ENST00000553683 RGL2O15211 777 aa9.47□□□□□ -0.89
VRK1-202ENST00000553683 PSEN1P49768 467 aa9.46□□□□□ -0.9
VRK1-202ENST00000553683 BMP2KQ9NSY1 1161 aaPredicted RBP9.45□□□□□ -0.9
VRK1-202ENST00000553683 TTLL13PA6NNM8 815 aa9.44□□□□□ -0.9
VRK1-202ENST00000553683 ATMINO43313 823 aaPredicted RBP9.44□□□□□ -0.9
VRK1-202ENST00000553683 TMEM106CQ9BVX2 250 aa9.43□□□□□ -0.9
VRK1-202ENST00000553683 TRPC6Q9Y210 931 aa9.43□□□□□ -0.9
VRK1-202ENST00000553683 POTEIP0CG38 1075 aa9.41□□□□□ -0.9
VRK1-202ENST00000553683 IER5LQ5T953 404 aa9.4□□□□□ -0.9
VRK1-202ENST00000553683 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.39□□□□□ -0.91
VRK1-202ENST00000553683 ZFP91Q96JP5 570 aaPredicted RBP9.39□□□□□ -0.91
VRK1-202ENST00000553683 ATN1P54259 1190 aaPredicted RBP9.38□□□□□ -0.91
VRK1-202ENST00000553683 SLC39A7Q92504 469 aa9.38□□□□□ -0.91
VRK1-202ENST00000553683 C7P10643 843 aa9.37□□□□□ -0.91
VRK1-202ENST00000553683 DNAJC5Q9H3Z4 198 aa9.37□□□□□ -0.91
VRK1-202ENST00000553683 HS6ST3Q8IZP7 471 aa9.36□□□□□ -0.91
VRK1-202ENST00000553683 TRIM35Q9UPQ4 493 aa9.36□□□□□ -0.91
VRK1-202ENST00000553683 STK25O00506 426 aa9.34□□□□□ -0.91
VRK1-202ENST00000553683 GOLGA2Q08379 1002 aa9.34□□□□□ -0.91
VRK1-202ENST00000553683 BCL11BQ9C0K0 894 aaPredicted RBP9.33□□□□□ -0.92
VRK1-202ENST00000553683 PELP1Q8IZL8 1130 aaKnown RBP9.32□□□□□ -0.92
VRK1-202ENST00000553683 SOX12O15370 315 aa9.31□□□□□ -0.92
VRK1-202ENST00000553683 MKRN3Q13064 507 aaKnown RBP9.31□□□□□ -0.92
VRK1-202ENST00000553683 CABP2Q9NPB3 220 aa9.31□□□□□ -0.92
VRK1-202ENST00000553683 STK24Q9Y6E0 443 aa9.31□□□□□ -0.92
VRK1-202ENST00000553683 ILDR1Q86SU0 546 aaPredicted RBP9.3□□□□□ -0.92
VRK1-202ENST00000553683 CHGAP10645 457 aaKnown RBP9.29□□□□□ -0.92
VRK1-202ENST00000553683 METRNQ9UJH8 293 aa9.28□□□□□ -0.92
VRK1-202ENST00000553683 DCAF8L2P0C7V8 631 aa9.27□□□□□ -0.93
VRK1-202ENST00000553683 IRX5P78411 483 aaPredicted RBP9.27□□□□□ -0.93
VRK1-202ENST00000553683 EFCAB3Q8N7B9 438 aa9.26□□□□□ -0.93
VRK1-202ENST00000553683 OCEL1Q9H607 264 aa9.26□□□□□ -0.93
VRK1-202ENST00000553683 RYDENQ9NUL5 291 aaKnown RBP9.25□□□□□ -0.93
VRK1-202ENST00000553683 SEC24BO95487 1268 aa9.24□□□□□ -0.93
VRK1-202ENST00000553683 PLCG2P16885 1265 aa9.23□□□□□ -0.93
VRK1-202ENST00000553683 NLRP6P59044 892 aa9.23□□□□□ -0.93
VRK1-202ENST00000553683 BBXQ8WY36 941 aaPredicted RBP9.22□□□□□ -0.93
VRK1-202ENST00000553683 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.22□□□□□ -0.93
VRK1-202ENST00000553683 POTEFA5A3E0 1075 aa9.19□□□□□ -0.94
VRK1-202ENST00000553683 PDCD7Q8N8D1 485 aaKnown RBP9.19□□□□□ -0.94
VRK1-202ENST00000553683 MFRPQ9BY79 579 aa9.19□□□□□ -0.94
VRK1-202ENST00000553683 COLQQ9Y215 455 aaPredicted RBP9.19□□□□□ -0.94
VRK1-202ENST00000553683 FBXO22Q8NEZ5 403 aa9.18□□□□□ -0.94
VRK1-202ENST00000553683 L3MBTL3Q96JM7 780 aaPredicted RBP9.17□□□□□ -0.94
VRK1-202ENST00000553683 PHF8Q9UPP1 1060 aa9.16□□□□□ -0.94
VRK1-202ENST00000553683 NKX1-1Q15270 411 aaPredicted RBP9.15□□□□□ -0.94
VRK1-202ENST00000553683 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.15□□□□□ -0.94
VRK1-202ENST00000553683 MAMSTRQ6ZN01 415 aa9.14□□□□□ -0.95
VRK1-202ENST00000553683 MS4A4AQ96JQ5 239 aa9.13□□□□□ -0.95
VRK1-202ENST00000553683 LHX8Q68G74 356 aa9.12□□□□□ -0.95
VRK1-202ENST00000553683 GTPBP6O43824 516 aaPredicted RBP9.1□□□□□ -0.95
VRK1-202ENST00000553683 TMEM121BQ9BXQ6 578 aaPredicted RBP9.1□□□□□ -0.95
VRK1-202ENST00000553683 G3V3G9 751 aa9.09□□□□□ -0.95
VRK1-202ENST00000553683 POTEB2H3BUK9 544 aa9.09□□□□□ -0.95
VRK1-202ENST00000553683 BOLA1Q9Y3E2 137 aa9.09□□□□□ -0.95
VRK1-202ENST00000553683 DPY19L2Q6NUT2 758 aa9.07□□□□□ -0.96
VRK1-202ENST00000553683 SPRYD3Q8NCJ5 442 aa9.07□□□□□ -0.96
VRK1-202ENST00000553683 SCUBE2Q9NQ36 999 aa9.07□□□□□ -0.96
VRK1-202ENST00000553683 POTEJP0CG39 1038 aa9.05□□□□□ -0.96
VRK1-202ENST00000553683 MICALL2Q8IY33 904 aa9.04□□□□□ -0.96
VRK1-202ENST00000553683 C3orf67Q6ZVT6 689 aa9.02□□□□□ -0.97
VRK1-202ENST00000553683 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.02□□□□□ -0.97
VRK1-202ENST00000553683 PPP1R37O75864 691 aa9□□□□□ -0.97
VRK1-202ENST00000553683 PAXIP1Q6ZW49 1069 aaPredicted RBP8.99□□□□□ -0.97
VRK1-202ENST00000553683 OTUD5Q96G74 571 aa8.99□□□□□ -0.97
VRK1-202ENST00000553683 PLCB2Q00722 1185 aa8.95□□□□□ -0.98
VRK1-202ENST00000553683 CFAP44Q96MT7 982 aa8.95□□□□□ -0.98
VRK1-202ENST00000553683 SLAIN1Q8ND83 568 aa8.92□□□□□ -0.98
VRK1-202ENST00000553683 KIF3CO14782 793 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms