RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 CANXP27824 592 aaKnown RBP12.28□□□□□ -0.44
GTF2A1-203ENST00000553612 UBTFP17480 764 aaKnown RBP12.28□□□□□ -0.44
GTF2A1-203ENST00000553612 C14orf37Q86TY3 774 aa12.27□□□□□ -0.44
GTF2A1-203ENST00000553612 MAPK8IP2Q13387 824 aaPredicted RBP12.27□□□□□ -0.44
GTF2A1-203ENST00000553612 FGD1P98174 961 aa12.25□□□□□ -0.45
GTF2A1-203ENST00000553612 PLPPR3Q6T4P5 718 aa12.25□□□□□ -0.45
GTF2A1-203ENST00000553612 BBXQ8WY36 941 aaPredicted RBP12.24□□□□□ -0.45
GTF2A1-203ENST00000553612 BRPF3Q9ULD4 1205 aa12.24□□□□□ -0.45
GTF2A1-203ENST00000553612 SENP3-EIF4A1A0A087X0R7 540 aa12.23□□□□□ -0.45
GTF2A1-203ENST00000553612 ATP1B4Q9UN42 357 aaPredicted RBP12.22□□□□□ -0.45
GTF2A1-203ENST00000553612 NCLP19338 710 aaKnown RBP12.21□□□□□ -0.46
GTF2A1-203ENST00000553612 CHMP4BQ9H444 224 aaKnown RBP12.2□□□□□ -0.46
GTF2A1-203ENST00000553612 PLCD3Q8N3E9 789 aa12.2□□□□□ -0.46
GTF2A1-203ENST00000553612 APPP05067 770 aa12.2□□□□□ -0.46
GTF2A1-203ENST00000553612 MSH5O43196 834 aa12.19□□□□□ -0.46
GTF2A1-203ENST00000553612 PNNQ9H307 717 aaKnown RBP12.18□□□□□ -0.46
GTF2A1-203ENST00000553612 ANP32BQ92688 251 aaKnown RBP12.17□□□□□ -0.46
GTF2A1-203ENST00000553612 NAP1L2Q9ULW6 460 aaPredicted RBP12.15□□□□□ -0.46
GTF2A1-203ENST00000553612 PATL2C9JE40 543 aaKnown RBP12.12□□□□□ -0.47
GTF2A1-203ENST00000553612 MYO15BQ96JP2 1530 aa12.12□□□□□ -0.47
GTF2A1-203ENST00000553612 DNTTIP2Q5QJE6 756 aaKnown RBP12.12□□□□□ -0.47
GTF2A1-203ENST00000553612 NCBP3Q53F19 620 aaKnown RBP12.11□□□□□ -0.47
GTF2A1-203ENST00000553612 ANP32CO43423 234 aa12.1□□□□□ -0.47
GTF2A1-203ENST00000553612 AAMPQ13685 434 aa12.1□□□□□ -0.47
GTF2A1-203ENST00000553612 CHMP4AQ9BY43 222 aa12.1□□□□□ -0.47
GTF2A1-203ENST00000553612 HNRNPUQ00839 825 aaKnown RBP eCLIP12.09□□□□□ -0.47
GTF2A1-203ENST00000553612 ZBTB7CA1YPR0 619 aa12.09□□□□□ -0.47
GTF2A1-203ENST00000553612 TRIM44Q96DX7 344 aaPredicted RBP12.09□□□□□ -0.47
GTF2A1-203ENST00000553612 HIRIP3Q9BW71 556 aaPredicted RBP12.08□□□□□ -0.48
GTF2A1-203ENST00000553612 DDX10Q13206 875 aaKnown RBP12.08□□□□□ -0.48
GTF2A1-203ENST00000553612 RGS3P49796 1198 aa12.06□□□□□ -0.48
GTF2A1-203ENST00000553612 PPM1GO15355 546 aaPredicted RBP12.06□□□□□ -0.48
GTF2A1-203ENST00000553612 ZNF526Q8TF50 670 aaPredicted RBP12.04□□□□□ -0.48
GTF2A1-203ENST00000553612 AEBP1Q8IUX7 1158 aa12.03□□□□□ -0.48
GTF2A1-203ENST00000553612 E9PSI1 815 aa12.03□□□□□ -0.48
GTF2A1-203ENST00000553612 FANCIQ9NVI1 1328 aa12.02□□□□□ -0.48
GTF2A1-203ENST00000553612 HOMEZQ8IX15 550 aa12.02□□□□□ -0.49
GTF2A1-203ENST00000553612 NISCHQ9Y2I1 1504 aa12.01□□□□□ -0.49
GTF2A1-203ENST00000553612 B4GALNT3Q6L9W6 998 aa12.01□□□□□ -0.49
GTF2A1-203ENST00000553612 DCAF1Q9Y4B6 1507 aa12.01□□□□□ -0.49
GTF2A1-203ENST00000553612 FAM9BQ8IZU0 186 aa11.99□□□□□ -0.49
GTF2A1-203ENST00000553612 ZHX1Q9UKY1 873 aaPredicted RBP11.99□□□□□ -0.49
GTF2A1-203ENST00000553612 VGLL3A8MV65 326 aa11.98□□□□□ -0.49
GTF2A1-203ENST00000553612 BRD2P25440 801 aaKnown RBP11.98□□□□□ -0.49
GTF2A1-203ENST00000553612 PAK3O75914 559 aaPredicted RBP11.97□□□□□ -0.49
GTF2A1-203ENST00000553612 TNNT3P45378 269 aaPredicted RBP11.97□□□□□ -0.49
GTF2A1-203ENST00000553612 GSE1Q14687 1217 aa11.97□□□□□ -0.49
GTF2A1-203ENST00000553612 WWC1Q8IX03 1113 aa11.96□□□□□ -0.5
GTF2A1-203ENST00000553612 CFAP44Q96MT7 982 aa11.95□□□□□ -0.5
GTF2A1-203ENST00000553612 RRP9O43818 475 aaKnown RBP11.95□□□□□ -0.5
GTF2A1-203ENST00000553612 FAM13BQ9NYF5 915 aa11.94□□□□□ -0.5
GTF2A1-203ENST00000553612 PRDM10Q9NQV6 1147 aa11.94□□□□□ -0.5
GTF2A1-203ENST00000553612 IPO9Q96P70 1041 aaKnown RBP11.93□□□□□ -0.5
GTF2A1-203ENST00000553612 CCDC180Q9P1Z9 1646 aa11.92□□□□□ -0.5
GTF2A1-203ENST00000553612 PTMSP20962 102 aa11.87□□□□□ -0.51
GTF2A1-203ENST00000553612 GZF1Q9H116 711 aaPredicted RBP11.86□□□□□ -0.51
GTF2A1-203ENST00000553612 FRAT1Q92837 279 aaPredicted RBP11.86□□□□□ -0.51
GTF2A1-203ENST00000553612 FAM43AQ8N2R8 423 aa11.85□□□□□ -0.51
GTF2A1-203ENST00000553612 TPRNQ4KMQ1 711 aa11.85□□□□□ -0.51
GTF2A1-203ENST00000553612 KCNH8Q96L42 1107 aa11.85□□□□□ -0.51
GTF2A1-203ENST00000553612 DDRGK1Q96HY6 314 aa11.84□□□□□ -0.51
GTF2A1-203ENST00000553612 L1TD1Q5T7N2 865 aaKnown RBP11.83□□□□□ -0.51
GTF2A1-203ENST00000553612 C11orf95C9JLR9 678 aaPredicted RBP11.83□□□□□ -0.52
GTF2A1-203ENST00000553612 PPP4R2Q9NY27 417 aa11.83□□□□□ -0.52
GTF2A1-203ENST00000553612 SPRYD3Q8NCJ5 442 aa11.82□□□□□ -0.52
GTF2A1-203ENST00000553612 ZNF771Q7L3S4 317 aaPredicted RBP11.81□□□□□ -0.52
GTF2A1-203ENST00000553612 ZFP91Q96JP5 570 aaPredicted RBP11.8□□□□□ -0.52
GTF2A1-203ENST00000553612 SLC4A3P48751 1232 aa11.79□□□□□ -0.52
GTF2A1-203ENST00000553612 P3H3Q8IVL6 736 aa11.79□□□□□ -0.52
GTF2A1-203ENST00000553612 CNPY4Q8N129 248 aa11.79□□□□□ -0.52
GTF2A1-203ENST00000553612 MSNP26038 577 aaKnown RBP11.79□□□□□ -0.52
GTF2A1-203ENST00000553612 IRX3P78415 501 aaPredicted RBP11.78□□□□□ -0.52
GTF2A1-203ENST00000553612 IPO4Q8TEX9 1081 aaKnown RBP11.75□□□□□ -0.53
GTF2A1-203ENST00000553612 FTSJ3Q8IY81 847 aaKnown RBP11.74□□□□□ -0.53
GTF2A1-203ENST00000553612 CERS3Q8IU89 383 aa11.73□□□□□ -0.53
GTF2A1-203ENST00000553612 CCDC9Q9Y3X0 531 aaKnown RBP11.73□□□□□ -0.53
GTF2A1-203ENST00000553612 FAM50AQ14320 339 aaKnown RBP11.71□□□□□ -0.53
GTF2A1-203ENST00000553612 BAZ1BQ9UIG0 1483 aaKnown RBP11.71□□□□□ -0.54
GTF2A1-203ENST00000553612 RBM25P49756 843 aaKnown RBP11.71□□□□□ -0.54
GTF2A1-203ENST00000553612 GOLGA6L3A6NEY3 463 aa11.7□□□□□ -0.54
GTF2A1-203ENST00000553612 PTMAP06454 111 aaKnown RBP11.7□□□□□ -0.54
GTF2A1-203ENST00000553612 TNNT1P13805 278 aa11.69□□□□□ -0.54
GTF2A1-203ENST00000553612 OS9Q13438 667 aaPredicted RBP11.69□□□□□ -0.54
GTF2A1-203ENST00000553612 CGNQ9P2M7 1197 aaKnown RBP11.69□□□□□ -0.54
GTF2A1-203ENST00000553612 SECISBP2LQ93073 1101 aaKnown RBP11.66□□□□□ -0.54
GTF2A1-203ENST00000553612 SLC4A1APQ9BWU0 796 aaKnown RBP11.66□□□□□ -0.54
GTF2A1-203ENST00000553612 HSP90B1P14625 803 aaKnown RBP11.65□□□□□ -0.54
GTF2A1-203ENST00000553612 FAM193AP78312 1265 aa11.65□□□□□ -0.54
GTF2A1-203ENST00000553612 NFKBIBQ15653 356 aa11.65□□□□□ -0.54
GTF2A1-203ENST00000553612 PDCL3Q9H2J4 239 aa11.64□□□□□ -0.55
GTF2A1-203ENST00000553612 SLKQ9H2G2 1235 aaPredicted RBP11.64□□□□□ -0.55
GTF2A1-203ENST00000553612 R3HCC1Q9Y3T6 440 aaKnown RBP11.64□□□□□ -0.55
GTF2A1-203ENST00000553612 TPM2P07951 284 aa11.63□□□□□ -0.55
GTF2A1-203ENST00000553612 MRS2Q9HD23 443 aa11.63□□□□□ -0.55
GTF2A1-203ENST00000553612 SOX12O15370 315 aa11.62□□□□□ -0.55
GTF2A1-203ENST00000553612 CC2D1BQ5T0F9 858 aaKnown RBP11.62□□□□□ -0.55
GTF2A1-203ENST00000553612 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
GTF2A1-203ENST00000553612 TRERF1Q96PN7 1200 aa11.61□□□□□ -0.55
GTF2A1-203ENST00000553612 PLCB2Q00722 1185 aa11.6□□□□□ -0.55
GTF2A1-203ENST00000553612 CALD1Q05682 793 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms