RNA–Protein interactions for RNA: ENST00000553570.5

ATXN3-222, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-222	ENST00000553570	PHF12	Q96QT6	1004 aa		11.19	□□□□□ -0.62
ATXN3-222	ENST00000553570	CLCN6	P51797	869 aa		11.15	□□□□□ -0.62
ATXN3-222	ENST00000553570	SPOCK2	Q92563	424 aa		11.14	□□□□□ -0.63
ATXN3-222	ENST00000553570	FAM212A	Q96EL1	285 aa		11.12	□□□□□ -0.63
ATXN3-222	ENST00000553570	KIF12	Q96FN5	646 aa		11.11	□□□□□ -0.63
ATXN3-222	ENST00000553570	GALR2	O43603	387 aa	Predicted RBP	11.1	□□□□□ -0.63
ATXN3-222	ENST00000553570	DCAF8	Q5TAQ9	597 aa		11.09	□□□□□ -0.63
ATXN3-222	ENST00000553570	MS4A3	Q96HJ5	214 aa		11.06	□□□□□ -0.64
ATXN3-222	ENST00000553570	MAP3K13	O43283	966 aa		11.05	□□□□□ -0.64
ATXN3-222	ENST00000553570	POTEI	P0CG38	1075 aa		11.05	□□□□□ -0.64
ATXN3-222	ENST00000553570	GSE1	Q14687	1217 aa		11.04	□□□□□ -0.64
ATXN3-222	ENST00000553570	PYGB	P11216	843 aa		11	□□□□□ -0.65
ATXN3-222	ENST00000553570	SGIP1	Q9BQI5	828 aa		11	□□□□□ -0.65
ATXN3-222	ENST00000553570	CHRM1	P11229	460 aa	Predicted RBP	10.99	□□□□□ -0.65
ATXN3-222	ENST00000553570	TRPC6	Q9Y210	931 aa		10.98	□□□□□ -0.65
ATXN3-222	ENST00000553570	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.97	□□□□□ -0.65
ATXN3-222	ENST00000553570	PCDHB13	Q9Y5F0	798 aa		10.97	□□□□□ -0.65
ATXN3-222	ENST00000553570	IFNL1	Q8IU54	200 aa		10.96	□□□□□ -0.65
ATXN3-222	ENST00000553570	DCBLD2	Q96PD2	775 aa		10.93	□□□□□ -0.66
ATXN3-222	ENST00000553570	ASTL	Q6HA08	431 aa	Predicted RBP	10.92	□□□□□ -0.66
ATXN3-222	ENST00000553570	NISCH	Q9Y2I1	1504 aa		10.91	□□□□□ -0.66
ATXN3-222	ENST00000553570	PCDHB8	Q9UN66	801 aa		10.9	□□□□□ -0.66
ATXN3-222	ENST00000553570	ATMIN	O43313	823 aa	Predicted RBP	10.89	□□□□□ -0.67
ATXN3-222	ENST00000553570	PELP1	Q8IZL8	1130 aa	Known RBP	10.89	□□□□□ -0.67
ATXN3-222	ENST00000553570	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.89	□□□□□ -0.67
ATXN3-222	ENST00000553570	TIE1	P35590	1138 aa		10.88	□□□□□ -0.67
ATXN3-222	ENST00000553570	PKD2	Q13563	968 aa		10.87	□□□□□ -0.67
ATXN3-222	ENST00000553570	TRIM41	Q8WV44	630 aa		10.87	□□□□□ -0.67
ATXN3-222	ENST00000553570	ATN1	P54259	1190 aa	Predicted RBP	10.86	□□□□□ -0.67
ATXN3-222	ENST00000553570	TTLL13P	A6NNM8	815 aa		10.84	□□□□□ -0.67
ATXN3-222	ENST00000553570	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.83	□□□□□ -0.68
ATXN3-222	ENST00000553570	LHX8	Q68G74	356 aa		10.82	□□□□□ -0.68
ATXN3-222	ENST00000553570	RNF25	Q96BH1	459 aa	Predicted RBP	10.82	□□□□□ -0.68
ATXN3-222	ENST00000553570	TMEM106C	Q9BVX2	250 aa		10.78	□□□□□ -0.68
ATXN3-222	ENST00000553570	ECM2	O94769	699 aa	Predicted RBP	10.75	□□□□□ -0.69
ATXN3-222	ENST00000553570	TRIM35	Q9UPQ4	493 aa		10.75	□□□□□ -0.69
ATXN3-222	ENST00000553570	PSEN1	P49768	467 aa		10.74	□□□□□ -0.69
ATXN3-222	ENST00000553570	RIOK3	O14730	519 aa	Known RBP	10.73	□□□□□ -0.69
ATXN3-222	ENST00000553570	PDAP1	Q13442	181 aa	Known RBP	10.73	□□□□□ -0.69
ATXN3-222	ENST00000553570	SLC39A7	Q92504	469 aa		10.73	□□□□□ -0.69
ATXN3-222	ENST00000553570	POTEF	A5A3E0	1075 aa		10.72	□□□□□ -0.69
ATXN3-222	ENST00000553570	C7	P10643	843 aa		10.72	□□□□□ -0.69
ATXN3-222	ENST00000553570	RTN4	Q9NQC3	1192 aa	Known RBP	10.72	□□□□□ -0.69
ATXN3-222	ENST00000553570	RGL2	O15211	777 aa		10.71	□□□□□ -0.69
ATXN3-222	ENST00000553570	METRN	Q9UJH8	293 aa		10.71	□□□□□ -0.69
ATXN3-222	ENST00000553570	POTEB2	H3BUK9	544 aa		10.7	□□□□□ -0.7
ATXN3-222	ENST00000553570	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.69	□□□□□ -0.7
ATXN3-222	ENST00000553570	IER5L	Q5T953	404 aa		10.67	□□□□□ -0.7
ATXN3-222	ENST00000553570	VGF	O15240	615 aa	Predicted RBP	10.66	□□□□□ -0.7
ATXN3-222	ENST00000553570	COLQ	Q9Y215	455 aa	Predicted RBP	10.66	□□□□□ -0.7
ATXN3-222	ENST00000553570	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.65	□□□□□ -0.7
ATXN3-222	ENST00000553570	ZFP91	Q96JP5	570 aa	Predicted RBP	10.65	□□□□□ -0.7
ATXN3-222	ENST00000553570	IRX5	P78411	483 aa	Predicted RBP	10.64	□□□□□ -0.71
ATXN3-222	ENST00000553570	PLSCR2	Q9NRY7	297 aa		10.64	□□□□□ -0.71
ATXN3-222	ENST00000553570	POTEJ	P0CG39	1038 aa		10.63	□□□□□ -0.71
ATXN3-222	ENST00000553570	ILDR1	Q86SU0	546 aa	Predicted RBP	10.6	□□□□□ -0.71
ATXN3-222	ENST00000553570	CABP2	Q9NPB3	220 aa		10.6	□□□□□ -0.71
ATXN3-222	ENST00000553570	SEC24B	O95487	1268 aa		10.56	□□□□□ -0.72
ATXN3-222	ENST00000553570	MKRN3	Q13064	507 aa	Known RBP	10.56	□□□□□ -0.72
ATXN3-222	ENST00000553570	PDCD7	Q8N8D1	485 aa	Known RBP	10.56	□□□□□ -0.72
ATXN3-222	ENST00000553570	OCEL1	Q9H607	264 aa		10.56	□□□□□ -0.72
ATXN3-222	ENST00000553570	TAOK2	Q9UL54	1235 aa		10.56	□□□□□ -0.72
ATXN3-222	ENST00000553570	EFCAB3	Q8N7B9	438 aa		10.55	□□□□□ -0.72
ATXN3-222	ENST00000553570	GOLGA2	Q08379	1002 aa		10.54	□□□□□ -0.72
ATXN3-222	ENST00000553570	OTUD5	Q96G74	571 aa		10.54	□□□□□ -0.72
ATXN3-222	ENST00000553570	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.54	□□□□□ -0.72
ATXN3-222	ENST00000553570	PLCG2	P16885	1265 aa		10.52	□□□□□ -0.73
ATXN3-222	ENST00000553570	STK25	O00506	426 aa		10.51	□□□□□ -0.73
ATXN3-222	ENST00000553570	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.51	□□□□□ -0.73	3e-6	■■□□□ 13.5
ATXN3-222	ENST00000553570	STK24	Q9Y6E0	443 aa		10.5	□□□□□ -0.73
ATXN3-222	ENST00000553570	SOX12	O15370	315 aa		10.48	□□□□□ -0.73
ATXN3-222	ENST00000553570	DPY19L2	Q6NUT2	758 aa		10.48	□□□□□ -0.73
ATXN3-222	ENST00000553570	HS6ST3	Q8IZP7	471 aa		10.47	□□□□□ -0.73
ATXN3-222	ENST00000553570	MS4A4A	Q96JQ5	239 aa		10.45	□□□□□ -0.74
ATXN3-222	ENST00000553570	PHF8	Q9UPP1	1060 aa		10.45	□□□□□ -0.74
ATXN3-222	ENST00000553570	FBXO22	Q8NEZ5	403 aa		10.44	□□□□□ -0.74
ATXN3-222	ENST00000553570	MFRP	Q9BY79	579 aa		10.44	□□□□□ -0.74
ATXN3-222	ENST00000553570	DNAJC5	Q9H3Z4	198 aa		10.43	□□□□□ -0.74
ATXN3-222	ENST00000553570	MAMSTR	Q6ZN01	415 aa		10.42	□□□□□ -0.74
ATXN3-222	ENST00000553570	CHGA	P10645	457 aa	Known RBP	10.41	□□□□□ -0.74
ATXN3-222	ENST00000553570	SCUBE2	Q9NQ36	999 aa		10.39	□□□□□ -0.75
ATXN3-222	ENST00000553570	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.38	□□□□□ -0.75
ATXN3-222	ENST00000553570	NLRP6	P59044	892 aa		10.37	□□□□□ -0.75
ATXN3-222	ENST00000553570	NKX1-1	Q15270	411 aa	Predicted RBP	10.37	□□□□□ -0.75
ATXN3-222	ENST00000553570	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.37	□□□□□ -0.75
ATXN3-222	ENST00000553570	BOLA1	Q9Y3E2	137 aa		10.35	□□□□□ -0.75
ATXN3-222	ENST00000553570	DCAF8L2	P0C7V8	631 aa		10.3	□□□□□ -0.76
ATXN3-222	ENST00000553570	MICALL2	Q8IY33	904 aa		10.3	□□□□□ -0.76
ATXN3-222	ENST00000553570	PPP1R37	O75864	691 aa		10.29	□□□□□ -0.76
ATXN3-222	ENST00000553570	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.29	□□□□□ -0.76
ATXN3-222	ENST00000553570	SLAIN1	Q8ND83	568 aa		10.28	□□□□□ -0.76
ATXN3-222	ENST00000553570	C3orf67	Q6ZVT6	689 aa		10.26	□□□□□ -0.77
ATXN3-222	ENST00000553570	TMEM92	Q6UXU6	159 aa		10.25	□□□□□ -0.77
ATXN3-222	ENST00000553570		G3V3G9	751 aa		10.23	□□□□□ -0.77
ATXN3-222	ENST00000553570	GTPBP6	O43824	516 aa	Predicted RBP	10.23	□□□□□ -0.77
ATXN3-222	ENST00000553570	POTEM	A6NI47	508 aa		10.22	□□□□□ -0.77
ATXN3-222	ENST00000553570	LCE2D	Q5TA82	110 aa	Predicted RBP	10.21	□□□□□ -0.77
ATXN3-222	ENST00000553570	SLC24A1	O60721	1099 aa		10.2	□□□□□ -0.78
ATXN3-222	ENST00000553570	BBX	Q8WY36	941 aa	Predicted RBP	10.18	□□□□□ -0.78
ATXN3-222	ENST00000553570	POTEG	Q6S5H5	508 aa		10.17	□□□□□ -0.78

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