RNA–Protein interactions for RNA: ENST00000553055.1

PFKM-231, Transcript of phosphofructokinase, muscle, human

TSL 5

Gene PFKM, Length 289 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PFKM-231	ENST00000553055	GTPBP6	O43824	516 aa	Predicted RBP	12.62	□□□□□ -0.39
PFKM-231	ENST00000553055	PLEKHG5	O94827	1062 aa		12.61	□□□□□ -0.39
PFKM-231	ENST00000553055	NEUROD2	Q15784	382 aa		12.61	□□□□□ -0.39
PFKM-231	ENST00000553055	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.6	□□□□□ -0.39
PFKM-231	ENST00000553055	NKX1-1	Q15270	411 aa	Predicted RBP	12.58	□□□□□ -0.4
PFKM-231	ENST00000553055	RYDEN	Q9NUL5	291 aa	Known RBP	12.57	□□□□□ -0.4
PFKM-231	ENST00000553055	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.54	□□□□□ -0.4
PFKM-231	ENST00000553055	POLA2	Q14181	598 aa		12.52	□□□□□ -0.41
PFKM-231	ENST00000553055	RNF25	Q96BH1	459 aa	Predicted RBP	12.48	□□□□□ -0.41
PFKM-231	ENST00000553055	RSPH6A	Q9H0K4	717 aa		12.48	□□□□□ -0.41
PFKM-231	ENST00000553055	WDR70	Q9NW82	654 aa		12.47	□□□□□ -0.41
PFKM-231	ENST00000553055	GSE1	Q14687	1217 aa		12.46	□□□□□ -0.41
PFKM-231	ENST00000553055	ZMYND15	Q9H091	742 aa		12.46	□□□□□ -0.41
PFKM-231	ENST00000553055	RIOK3	O14730	519 aa	Known RBP	12.45	□□□□□ -0.42
PFKM-231	ENST00000553055	STK25	O00506	426 aa		12.44	□□□□□ -0.42
PFKM-231	ENST00000553055	TRH	P20396	242 aa	Predicted RBP	12.44	□□□□□ -0.42
PFKM-231	ENST00000553055	HRC	P23327	699 aa		12.44	□□□□□ -0.42
PFKM-231	ENST00000553055	KCNV2	Q8TDN2	545 aa		12.42	□□□□□ -0.42
PFKM-231	ENST00000553055	ZC3H15	Q8WU90	426 aa	Known RBP	12.41	□□□□□ -0.42
PFKM-231	ENST00000553055	ZNF692	Q9BU19	519 aa	Predicted RBP	12.4	□□□□□ -0.42
PFKM-231	ENST00000553055	SLC24A3	Q9HC58	644 aa		12.38	□□□□□ -0.43
PFKM-231	ENST00000553055	CCDC9	Q9Y3X0	531 aa	Known RBP	12.38	□□□□□ -0.43
PFKM-231	ENST00000553055	VGF	O15240	615 aa	Predicted RBP	12.36	□□□□□ -0.43
PFKM-231	ENST00000553055	ZBTB7C	A1YPR0	619 aa		12.34	□□□□□ -0.43
PFKM-231	ENST00000553055	POTED	Q86YR6	584 aa		12.31	□□□□□ -0.44
PFKM-231	ENST00000553055	ARID3A	Q99856	593 aa		12.3	□□□□□ -0.44
PFKM-231	ENST00000553055	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.26	□□□□□ -0.45
PFKM-231	ENST00000553055	STK24	Q9Y6E0	443 aa		12.26	□□□□□ -0.45
PFKM-231	ENST00000553055	SPDYE2B	A6NHP3	402 aa		12.25	□□□□□ -0.45
PFKM-231	ENST00000553055	SPDYE6	P0CI01	402 aa		12.25	□□□□□ -0.45
PFKM-231	ENST00000553055	PDIA4	P13667	645 aa	Known RBP	12.25	□□□□□ -0.45
PFKM-231	ENST00000553055	SPDYE2	Q495Y8	402 aa		12.25	□□□□□ -0.45
PFKM-231	ENST00000553055	SSUH2	Q9Y2M2	353 aa		12.25	□□□□□ -0.45
PFKM-231	ENST00000553055	ARHGEF1	Q92888	912 aa	Known RBP	12.23	□□□□□ -0.45
PFKM-231	ENST00000553055	SGIP1	Q9BQI5	828 aa		12.23	□□□□□ -0.45
PFKM-231	ENST00000553055	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.22	□□□□□ -0.45
PFKM-231	ENST00000553055	DCAF8	Q5TAQ9	597 aa		12.2	□□□□□ -0.46
PFKM-231	ENST00000553055	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.2	□□□□□ -0.46
PFKM-231	ENST00000553055	ZMYND10	O75800	440 aa		12.19	□□□□□ -0.46
PFKM-231	ENST00000553055	CAPN15	O75808	1086 aa		12.18	□□□□□ -0.46
PFKM-231	ENST00000553055	SMYD5	Q6GMV2	418 aa		12.15	□□□□□ -0.46
PFKM-231	ENST00000553055	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	12.14	□□□□□ -0.47
PFKM-231	ENST00000553055	TESPA1	A2RU30	521 aa	Predicted RBP	12.14	□□□□□ -0.47
PFKM-231	ENST00000553055	ZFP91	Q96JP5	570 aa	Predicted RBP	12.14	□□□□□ -0.47
PFKM-231	ENST00000553055	CADPS2	Q86UW7	1296 aa		12.12	□□□□□ -0.47
PFKM-231	ENST00000553055	C1orf115	Q9H7X2	142 aa		12.12	□□□□□ -0.47
PFKM-231	ENST00000553055	NUBP1	P53384	320 aa		12.11	□□□□□ -0.47
PFKM-231	ENST00000553055	FAM212A	Q96EL1	285 aa		12.11	□□□□□ -0.47
PFKM-231	ENST00000553055	CHRM1	P11229	460 aa	Predicted RBP	12.09	□□□□□ -0.47
PFKM-231	ENST00000553055	IL27	Q8NEV9	243 aa		12.09	□□□□□ -0.47
PFKM-231	ENST00000553055	AK7	Q96M32	723 aa		12.09	□□□□□ -0.47
PFKM-231	ENST00000553055	APBB1	O00213	710 aa		12.08	□□□□□ -0.48
PFKM-231	ENST00000553055	SEMA3E	O15041	775 aa		12.08	□□□□□ -0.48
PFKM-231	ENST00000553055	BARGIN	Q6ZT62	677 aa		12.08	□□□□□ -0.48
PFKM-231	ENST00000553055	E2F4	Q16254	413 aa		12.06	□□□□□ -0.48
PFKM-231	ENST00000553055	OSCAR	Q8IYS5	282 aa		12.05	□□□□□ -0.48
PFKM-231	ENST00000553055	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.05	□□□□□ -0.48
PFKM-231	ENST00000553055	ARID3C	A6NKF2	412 aa		12.03	□□□□□ -0.48
PFKM-231	ENST00000553055	ABCB7	O75027	752 aa		12.02	□□□□□ -0.49
PFKM-231	ENST00000553055	KDM4C	Q9H3R0	1056 aa		12.02	□□□□□ -0.49
PFKM-231	ENST00000553055	FLII	Q13045	1269 aa		12.01	□□□□□ -0.49
PFKM-231	ENST00000553055	MKRN3	Q13064	507 aa	Known RBP	11.98	□□□□□ -0.49
PFKM-231	ENST00000553055	KRI1	Q8N9T8	703 aa	Known RBP	11.97	□□□□□ -0.49
PFKM-231	ENST00000553055	NECTIN2	Q92692	538 aa		11.97	□□□□□ -0.49
PFKM-231	ENST00000553055	KCTD17	Q8N5Z5	321 aa		11.94	□□□□□ -0.5
PFKM-231	ENST00000553055	CCDC82	Q8N4S0	544 aa		11.9	□□□□□ -0.5
PFKM-231	ENST00000553055	PDE4D	Q08499	809 aa		11.89	□□□□□ -0.51
PFKM-231	ENST00000553055	PELP1	Q8IZL8	1130 aa	Known RBP	11.89	□□□□□ -0.51
PFKM-231	ENST00000553055	GPIHBP1	Q8IV16	184 aa		11.88	□□□□□ -0.51
PFKM-231	ENST00000553055	TRAIP	Q9BWF2	469 aa		11.86	□□□□□ -0.51
PFKM-231	ENST00000553055	TRIM66	O15016	1216 aa		11.85	□□□□□ -0.51
PFKM-231	ENST00000553055	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.84	□□□□□ -0.51
PFKM-231	ENST00000553055		A6NJR5	290 aa		11.84	□□□□□ -0.51
PFKM-231	ENST00000553055	RAD21	O60216	631 aa		11.84	□□□□□ -0.51
PFKM-231	ENST00000553055	PYGB	P11216	843 aa		11.82	□□□□□ -0.52
PFKM-231	ENST00000553055	DDRGK1	Q96HY6	314 aa		11.82	□□□□□ -0.52
PFKM-231	ENST00000553055	SHROOM4	Q9ULL8	1493 aa		11.81	□□□□□ -0.52
PFKM-231	ENST00000553055	TRAK2	O60296	914 aa		11.8	□□□□□ -0.52
PFKM-231	ENST00000553055	CCDC180	Q9P1Z9	1646 aa		11.79	□□□□□ -0.52
PFKM-231	ENST00000553055	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.78	□□□□□ -0.52
PFKM-231	ENST00000553055	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.77	□□□□□ -0.53
PFKM-231	ENST00000553055	FAM117A	Q9C073	453 aa		11.77	□□□□□ -0.53
PFKM-231	ENST00000553055	MYT1	Q01538	1121 aa		11.76	□□□□□ -0.53
PFKM-231	ENST00000553055	TMCO4	Q5TGY1	634 aa		11.75	□□□□□ -0.53
PFKM-231	ENST00000553055	AEBP1	Q8IUX7	1158 aa		11.75	□□□□□ -0.53
PFKM-231	ENST00000553055	RASEF	Q8IZ41	740 aa		11.75	□□□□□ -0.53
PFKM-231	ENST00000553055	MFRP	Q9BY79	579 aa		11.75	□□□□□ -0.53
PFKM-231	ENST00000553055	LOC105371045	A0A1W2PR82	267 aa		11.74	□□□□□ -0.53
PFKM-231	ENST00000553055	RBM26	Q5T8P6	1007 aa	Known RBP	11.74	□□□□□ -0.53
PFKM-231	ENST00000553055	PDAP1	Q13442	181 aa	Known RBP	11.73	□□□□□ -0.53
PFKM-231	ENST00000553055	HMGB1	P09429	215 aa	Known RBP	11.72	□□□□□ -0.53
PFKM-231	ENST00000553055	RGS22	Q8NE09	1264 aa		11.72	□□□□□ -0.53
PFKM-231	ENST00000553055	CCDC97	Q96F63	343 aa	Predicted RBP	11.71	□□□□□ -0.53
PFKM-231	ENST00000553055	ONECUT3	O60422	494 aa	Predicted RBP	11.7	□□□□□ -0.54
PFKM-231	ENST00000553055	C1QBP	Q07021	282 aa	Known RBP	11.7	□□□□□ -0.54
PFKM-231	ENST00000553055	CLUAP1	Q96AJ1	413 aa		11.7	□□□□□ -0.54
PFKM-231	ENST00000553055	RNF39	Q9H2S5	420 aa		11.7	□□□□□ -0.54
PFKM-231	ENST00000553055	SERPINA10	Q9UK55	444 aa		11.7	□□□□□ -0.54
PFKM-231	ENST00000553055	GOPC	Q9HD26	462 aa		11.69	□□□□□ -0.54
PFKM-231	ENST00000553055	PDE4A	P27815	886 aa		11.68	□□□□□ -0.54

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