RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TSHZ2Q9NRE2 1034 aa13.65□□□□□ -0.22
LIMA1-210ENST00000552045 PRR29P0C7W0 189 aa13.6□□□□□ -0.23
LIMA1-210ENST00000552045 GSE1Q14687 1217 aa13.58□□□□□ -0.24
LIMA1-210ENST00000552045 HS6ST3Q8IZP7 471 aa13.58□□□□□ -0.24
LIMA1-210ENST00000552045 RNF25Q96BH1 459 aaPredicted RBP13.54□□□□□ -0.24
LIMA1-210ENST00000552045 NUBP1P53384 320 aa13.53□□□□□ -0.24
LIMA1-210ENST00000552045 TPRNQ4KMQ1 711 aa13.51□□□□□ -0.25
LIMA1-210ENST00000552045 DNAJC5Q9H3Z4 198 aa13.51□□□□□ -0.25
LIMA1-210ENST00000552045 DCAF8Q5TAQ9 597 aa13.47□□□□□ -0.25
LIMA1-210ENST00000552045 CREBZFQ9NS37 354 aa13.47□□□□□ -0.25
LIMA1-210ENST00000552045 CHRDL2Q6WN34 429 aa13.45□□□□□ -0.26
LIMA1-210ENST00000552045 RIOK3O14730 519 aaKnown RBP13.44□□□□□ -0.26
LIMA1-210ENST00000552045 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.26
LIMA1-210ENST00000552045 NKX1-1Q15270 411 aaPredicted RBP13.39□□□□□ -0.27
LIMA1-210ENST00000552045 FAM212AQ96EL1 285 aa13.38□□□□□ -0.27
LIMA1-210ENST00000552045 MNX1P50219 401 aaPredicted RBP13.37□□□□□ -0.27
LIMA1-210ENST00000552045 VGFO15240 615 aaPredicted RBP13.34□□□□□ -0.27
LIMA1-210ENST00000552045 GTPBP6O43824 516 aaPredicted RBP13.34□□□□□ -0.27
LIMA1-210ENST00000552045 CHRM1P11229 460 aaPredicted RBP13.33□□□□□ -0.28
LIMA1-210ENST00000552045 NBR1Q14596 966 aa13.33□□□□□ -0.28
LIMA1-210ENST00000552045 CHADLQ6NUI6 762 aa13.33□□□□□ -0.28
LIMA1-210ENST00000552045 STK25O00506 426 aa13.32□□□□□ -0.28
LIMA1-210ENST00000552045 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
LIMA1-210ENST00000552045 PRKAR2AP13861 404 aaKnown RBP13.31□□□□□ -0.28
LIMA1-210ENST00000552045 RASEFQ8IZ41 740 aa13.29□□□□□ -0.28
LIMA1-210ENST00000552045 SGIP1Q9BQI5 828 aa13.27□□□□□ -0.29
LIMA1-210ENST00000552045 FARP1Q9Y4F1 1045 aaPredicted RBP13.25□□□□□ -0.29
LIMA1-210ENST00000552045 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.22□□□□□ -0.29
LIMA1-210ENST00000552045 ZFP91Q96JP5 570 aaPredicted RBP13.22□□□□□ -0.29
LIMA1-210ENST00000552045 BCL11BQ9C0K0 894 aaPredicted RBP13.21□□□□□ -0.29
LIMA1-210ENST00000552045 STK24Q9Y6E0 443 aa13.21□□□□□ -0.29
LIMA1-210ENST00000552045 PYGBP11216 843 aa13.18□□□□□ -0.3
LIMA1-210ENST00000552045 RYDENQ9NUL5 291 aaKnown RBP13.18□□□□□ -0.3
LIMA1-210ENST00000552045 ZNF467Q7Z7K2 595 aaPredicted RBP13.02□□□□□ -0.33
LIMA1-210ENST00000552045 TSPYL2Q9H2G4 693 aaPredicted RBP13.01□□□□□ -0.33
LIMA1-210ENST00000552045 PAK3O75914 559 aaPredicted RBP12.99□□□□□ -0.33
LIMA1-210ENST00000552045 P3H3Q8IVL6 736 aa12.98□□□□□ -0.33
LIMA1-210ENST00000552045 CD44P16070 742 aaKnown RBP12.95□□□□□ -0.34
LIMA1-210ENST00000552045 PDAP1Q13442 181 aaKnown RBP12.95□□□□□ -0.34
LIMA1-210ENST00000552045 CCDC61Q9Y6R9 512 aa12.95□□□□□ -0.34
LIMA1-210ENST00000552045 C19orf67A6NJJ6 358 aa12.93□□□□□ -0.34
LIMA1-210ENST00000552045 CADPS2Q86UW7 1296 aa12.92□□□□□ -0.34
LIMA1-210ENST00000552045 WDR70Q9NW82 654 aa12.91□□□□□ -0.34
LIMA1-210ENST00000552045 PCDHB8Q9UN66 801 aa12.91□□□□□ -0.34
LIMA1-210ENST00000552045 PCDHB13Q9Y5F0 798 aa12.91□□□□□ -0.34
LIMA1-210ENST00000552045 ZRANB1Q9UGI0 708 aa12.89□□□□□ -0.35
LIMA1-210ENST00000552045 PSEN1P49768 467 aa12.86□□□□□ -0.35
LIMA1-210ENST00000552045 ZNF579Q8NAF0 562 aaKnown RBP12.86□□□□□ -0.35
LIMA1-210ENST00000552045 KCNV2Q8TDN2 545 aa12.86□□□□□ -0.35
LIMA1-210ENST00000552045 MFRPQ9BY79 579 aa12.85□□□□□ -0.35
LIMA1-210ENST00000552045 POTEHQ6S545 545 aa12.84□□□□□ -0.35
LIMA1-210ENST00000552045 HAX1O00165 279 aa12.81□□□□□ -0.36
LIMA1-210ENST00000552045 KIF12Q96FN5 646 aa12.81□□□□□ -0.36
LIMA1-210ENST00000552045 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIMA1-210ENST00000552045 PHF12Q96QT6 1004 aa12.77□□□□□ -0.37
LIMA1-210ENST00000552045 MAP3K13O43283 966 aa12.76□□□□□ -0.37
LIMA1-210ENST00000552045 LMOD2Q6P5Q4 547 aa12.76□□□□□ -0.37
LIMA1-210ENST00000552045 IFNL1Q8IU54 200 aa12.75□□□□□ -0.37
LIMA1-210ENST00000552045 PPP1R37O75864 691 aa12.74□□□□□ -0.37
LIMA1-210ENST00000552045 FBXO22Q8NEZ5 403 aa12.73□□□□□ -0.37
LIMA1-210ENST00000552045 GTF3C3Q9Y5Q9 886 aa12.73□□□□□ -0.37
LIMA1-210ENST00000552045 NLRP6P59044 892 aa12.72□□□□□ -0.37
LIMA1-210ENST00000552045 EFCAB3Q8N7B9 438 aa12.72□□□□□ -0.37
LIMA1-210ENST00000552045 SOX12O15370 315 aa12.71□□□□□ -0.37
LIMA1-210ENST00000552045 EVX2Q03828 476 aa12.71□□□□□ -0.37
LIMA1-210ENST00000552045 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.37
LIMA1-210ENST00000552045 TMEM132AQ24JP5 1023 aa12.7□□□□□ -0.38
LIMA1-210ENST00000552045 CABP2Q9NPB3 220 aa12.7□□□□□ -0.38
LIMA1-210ENST00000552045 TIMELESSQ9UNS1 1208 aa12.69□□□□□ -0.38
LIMA1-210ENST00000552045 TULP1O00294 542 aaPredicted RBP12.68□□□□□ -0.38
LIMA1-210ENST00000552045 CLCN6P51797 869 aa12.68□□□□□ -0.38
LIMA1-210ENST00000552045 PHF8Q9UPP1 1060 aa12.68□□□□□ -0.38
LIMA1-210ENST00000552045 E2F4Q16254 413 aa12.67□□□□□ -0.38
LIMA1-210ENST00000552045 MS4A3Q96HJ5 214 aa12.65□□□□□ -0.38
LIMA1-210ENST00000552045 TESPA1A2RU30 521 aaPredicted RBP12.58□□□□□ -0.4
LIMA1-210ENST00000552045 NCKAP5LQ9HCH0 1330 aa12.58□□□□□ -0.4
LIMA1-210ENST00000552045 SEMA3EO15041 775 aa12.57□□□□□ -0.4
LIMA1-210ENST00000552045 ZC3H15Q8WU90 426 aaKnown RBP12.57□□□□□ -0.4
LIMA1-210ENST00000552045 GALR2O43603 387 aaPredicted RBP12.56□□□□□ -0.4
LIMA1-210ENST00000552045 ERICH6Q7L0X2 663 aa12.56□□□□□ -0.4
LIMA1-210ENST00000552045 PDE4AP27815 886 aa12.54□□□□□ -0.4
LIMA1-210ENST00000552045 MS4A4AQ96JQ5 239 aa12.54□□□□□ -0.4
LIMA1-210ENST00000552045 LARP6Q9BRS8 491 aaKnown RBP12.54□□□□□ -0.4
LIMA1-210ENST00000552045 TRPC6Q9Y210 931 aa12.54□□□□□ -0.4
LIMA1-210ENST00000552045 TIE1P35590 1138 aa12.53□□□□□ -0.4
LIMA1-210ENST00000552045 BRPF1P55201 1214 aaPredicted RBP12.52□□□□□ -0.41
LIMA1-210ENST00000552045 MFSD10Q14728 455 aa12.52□□□□□ -0.41
LIMA1-210ENST00000552045 GABBR2O75899 941 aa12.5□□□□□ -0.41
LIMA1-210ENST00000552045 TMEM106CQ9BVX2 250 aa12.5□□□□□ -0.41
LIMA1-210ENST00000552045 CRISPLD2Q9H0B8 497 aa12.5□□□□□ -0.41
LIMA1-210ENST00000552045 ARIH1Q9Y4X5 557 aaPredicted RBP12.48□□□□□ -0.41
LIMA1-210ENST00000552045 GOLGA2Q08379 1002 aa12.47□□□□□ -0.41
LIMA1-210ENST00000552045 DDX27Q96GQ7 796 aaKnown RBP12.47□□□□□ -0.41
LIMA1-210ENST00000552045 BMP2KQ9NSY1 1161 aaPredicted RBP12.47□□□□□ -0.41
LIMA1-210ENST00000552045 TTLL13PA6NNM8 815 aa12.46□□□□□ -0.41
LIMA1-210ENST00000552045 SMYD5Q6GMV2 418 aa12.46□□□□□ -0.41
LIMA1-210ENST00000552045 SP7Q8TDD2 431 aaPredicted RBP12.45□□□□□ -0.42
LIMA1-210ENST00000552045 SLC24A3Q9HC58 644 aa12.45□□□□□ -0.42
LIMA1-210ENST00000552045 CAMK2BQ13554 666 aa12.43□□□□□ -0.42
LIMA1-210ENST00000552045 ZMYND10O75800 440 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms