RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PLEKHG5O94827 1062 aa9.41□□□□□ -0.9
LIMA1-208ENST00000551691 CCDC61Q9Y6R9 512 aa9.4□□□□□ -0.9
LIMA1-208ENST00000551691 POTEB2H3BUK9 544 aa9.37□□□□□ -0.91
LIMA1-208ENST00000551691 TRPC6Q9Y210 931 aa9.37□□□□□ -0.91
LIMA1-208ENST00000551691 KIF12Q96FN5 646 aa9.35□□□□□ -0.91
LIMA1-208ENST00000551691 MAP3K13O43283 966 aa9.34□□□□□ -0.91
LIMA1-208ENST00000551691 ATMINO43313 823 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-208ENST00000551691 ASTLQ6HA08 431 aaPredicted RBP9.31□□□□□ -0.92
LIMA1-208ENST00000551691 METRNQ9UJH8 293 aa9.31□□□□□ -0.92
LIMA1-208ENST00000551691 ATN1P54259 1190 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-208ENST00000551691 NUBP1P53384 320 aa9.29□□□□□ -0.92
LIMA1-208ENST00000551691 OTUD5Q96G74 571 aa9.29□□□□□ -0.92
LIMA1-208ENST00000551691 BMP2KQ9NSY1 1161 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-208ENST00000551691 POTEJP0CG39 1038 aa9.24□□□□□ -0.93
LIMA1-208ENST00000551691 SLC39A7Q92504 469 aa9.24□□□□□ -0.93
LIMA1-208ENST00000551691 ZBTB47Q9UFB7 747 aaPredicted RBP9.24□□□□□ -0.93
LIMA1-208ENST00000551691 PCDHB13Q9Y5F0 798 aa9.23□□□□□ -0.93
LIMA1-208ENST00000551691 C7P10643 843 aa9.21□□□□□ -0.94
LIMA1-208ENST00000551691 FAM212AQ96EL1 285 aa9.21□□□□□ -0.94
LIMA1-208ENST00000551691 POTEFA5A3E0 1075 aa9.19□□□□□ -0.94
LIMA1-208ENST00000551691 TTLL13PA6NNM8 815 aa9.19□□□□□ -0.94
LIMA1-208ENST00000551691 DCAF8Q5TAQ9 597 aa9.19□□□□□ -0.94
LIMA1-208ENST00000551691 IFNL1Q8IU54 200 aa9.19□□□□□ -0.94
LIMA1-208ENST00000551691 TIE1P35590 1138 aa9.18□□□□□ -0.94
LIMA1-208ENST00000551691 FBXO3Q9UK99 471 aa9.18□□□□□ -0.94
LIMA1-208ENST00000551691 PYGBP11216 843 aa9.17□□□□□ -0.94
LIMA1-208ENST00000551691 VASPP50552 380 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-208ENST00000551691 KLHL34Q8N239 644 aa9.16□□□□□ -0.94
LIMA1-208ENST00000551691 TRIM35Q9UPQ4 493 aa9.15□□□□□ -0.94
LIMA1-208ENST00000551691 COLQQ9Y215 455 aaPredicted RBP9.15□□□□□ -0.94
LIMA1-208ENST00000551691 TMEM106CQ9BVX2 250 aa9.12□□□□□ -0.95
LIMA1-208ENST00000551691 SEC24BO95487 1268 aa9.11□□□□□ -0.95
LIMA1-208ENST00000551691 PCDHB8Q9UN66 801 aa9.11□□□□□ -0.95
LIMA1-208ENST00000551691 SGIP1Q9BQI5 828 aa9.1□□□□□ -0.95
LIMA1-208ENST00000551691 MAMSTRQ6ZN01 415 aa9.06□□□□□ -0.96
LIMA1-208ENST00000551691 SCUBE2Q9NQ36 999 aa9.06□□□□□ -0.96
LIMA1-208ENST00000551691 POTEMA6NI47 508 aa9.03□□□□□ -0.96
LIMA1-208ENST00000551691 FAM163AQ96GL9 167 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-208ENST00000551691 PLSCR2Q9NRY7 297 aa9.03□□□□□ -0.96
LIMA1-208ENST00000551691 POTEGQ6S5H5 508 aa9.02□□□□□ -0.97
LIMA1-208ENST00000551691 IFNLR1Q8IU57 520 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-208ENST00000551691 IER5LQ5T953 404 aa9.01□□□□□ -0.97
LIMA1-208ENST00000551691 PLCG2P16885 1265 aa9□□□□□ -0.97
LIMA1-208ENST00000551691 GSE1Q14687 1217 aa8.99□□□□□ -0.97
LIMA1-208ENST00000551691 LCE2DQ5TA82 110 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-208ENST00000551691 CIZ1Q9ULV3 898 aaPredicted RBP8.99□□□□□ -0.97
LIMA1-208ENST00000551691 IRX5P78411 483 aaPredicted RBP8.97□□□□□ -0.97
LIMA1-208ENST00000551691 SPOCK2Q92563 424 aa8.95□□□□□ -0.98
LIMA1-208ENST00000551691 SLAIN1Q8ND83 568 aa8.94□□□□□ -0.98
LIMA1-208ENST00000551691 ZNF467Q7Z7K2 595 aaPredicted RBP8.93□□□□□ -0.98
LIMA1-208ENST00000551691 PSEN1P49768 467 aa8.91□□□□□ -0.98
LIMA1-208ENST00000551691 OCEL1Q9H607 264 aa8.91□□□□□ -0.98
LIMA1-208ENST00000551691 GOLGA2Q08379 1002 aa8.89□□□□□ -0.99
LIMA1-208ENST00000551691 CHRM1P11229 460 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-208ENST00000551691 MKRN3Q13064 507 aaKnown RBP8.87□□□□□ -0.99
LIMA1-208ENST00000551691 PDCD7Q8N8D1 485 aaKnown RBP8.86□□□□□ -0.99
LIMA1-208ENST00000551691 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.85□□□□□ -0.99
LIMA1-208ENST00000551691 PDAP1Q13442 181 aaKnown RBP8.84□□□□□ -0.99
LIMA1-208ENST00000551691 CABP2Q9NPB3 220 aa8.84□□□□□ -0.99
LIMA1-208ENST00000551691 ST18O60284 1047 aa8.82□□□□□ -1
LIMA1-208ENST00000551691 DPY19L2Q6NUT2 758 aa8.82□□□□□ -1
LIMA1-208ENST00000551691 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.82□□□□□ -1
LIMA1-208ENST00000551691 C3orf67Q6ZVT6 689 aa8.78□□□□□ -1
LIMA1-208ENST00000551691 NISCHQ9Y2I1 1504 aa8.75□□□□□ -1.01
LIMA1-208ENST00000551691 MARVELD3Q96A59 401 aa8.75□□□□□ -1.01
LIMA1-208ENST00000551691 CDAN1Q8IWY9 1227 aa8.74□□□□□ -1.01
LIMA1-208ENST00000551691 L3MBTL3Q96JM7 780 aaPredicted RBP8.74□□□□□ -1.01
LIMA1-208ENST00000551691 EFCAB3Q8N7B9 438 aa8.73□□□□□ -1.01
LIMA1-208ENST00000551691 RNF25Q96BH1 459 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-208ENST00000551691 PCDH10Q9P2E7 1040 aa8.72□□□□□ -1.01
LIMA1-208ENST00000551691 ILDR1Q86SU0 546 aaPredicted RBP8.7□□□□□ -1.02
LIMA1-208ENST00000551691 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-208ENST00000551691 G3V3G9 751 aa8.68□□□□□ -1.02
LIMA1-208ENST00000551691 TRIM41Q8WV44 630 aa8.68□□□□□ -1.02
LIMA1-208ENST00000551691 ZFP91Q96JP5 570 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-208ENST00000551691 BOLA1Q9Y3E2 137 aa8.68□□□□□ -1.02
LIMA1-208ENST00000551691 ABCC9O60706 1549 aa8.68□□□□□ -1.02
LIMA1-208ENST00000551691 RIOK3O14730 519 aaKnown RBP8.67□□□□□ -1.02
LIMA1-208ENST00000551691 SNPHO15079 494 aa8.67□□□□□ -1.02
LIMA1-208ENST00000551691 SLC24A1O60721 1099 aa8.64□□□□□ -1.03
LIMA1-208ENST00000551691 EMP3P54852 163 aa8.63□□□□□ -1.03
LIMA1-208ENST00000551691 AMER1Q5JTC6 1135 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-208ENST00000551691 PHF8Q9UPP1 1060 aa8.63□□□□□ -1.03
LIMA1-208ENST00000551691 TMEM121BQ9BXQ6 578 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-208ENST00000551691 VGFO15240 615 aaPredicted RBP8.61□□□□□ -1.03
LIMA1-208ENST00000551691 MS4A4AQ96JQ5 239 aa8.61□□□□□ -1.03
LIMA1-208ENST00000551691 POTEB3A0JP26 581 aa8.59□□□□□ -1.03
LIMA1-208ENST00000551691 FAM205CA6NFA0 338 aa8.59□□□□□ -1.03
LIMA1-208ENST00000551691 POTEBQ6S5H4 581 aa8.59□□□□□ -1.03
LIMA1-208ENST00000551691 HOXB3P14651 431 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-208ENST00000551691 TMEM92Q6UXU6 159 aa8.58□□□□□ -1.04
LIMA1-208ENST00000551691 MICALL2Q8IY33 904 aa8.58□□□□□ -1.04
LIMA1-208ENST00000551691 BCL11BQ9C0K0 894 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-208ENST00000551691 STK24Q9Y6E0 443 aa8.57□□□□□ -1.04
LIMA1-208ENST00000551691 ECM2O94769 699 aaPredicted RBP8.56□□□□□ -1.04
LIMA1-208ENST00000551691 HS3ST6Q96QI5 342 aa8.56□□□□□ -1.04
LIMA1-208ENST00000551691 SOX12O15370 315 aa8.54□□□□□ -1.04
LIMA1-208ENST00000551691 ZNF710Q8N1W2 664 aa8.53□□□□□ -1.04
LIMA1-208ENST00000551691 RTN4Q9NQC3 1192 aaKnown RBP8.53□□□□□ -1.04
LIMA1-208ENST00000551691 STK25O00506 426 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms