RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 ATMINO43313 823 aaPredicted RBP8.4□□□□□ -1.06
PTCH1-223ENST00000551623 POTEJP0CG39 1038 aa8.4□□□□□ -1.06
PTCH1-223ENST00000551623 C7P10643 843 aa8.4□□□□□ -1.06
PTCH1-223ENST00000551623 SPDYE4A6NLX3 237 aa8.39□□□□□ -1.07
PTCH1-223ENST00000551623 MAMSTRQ6ZN01 415 aa8.39□□□□□ -1.07
PTCH1-223ENST00000551623 LCE2DQ5TA82 110 aaPredicted RBP8.37□□□□□ -1.07
PTCH1-223ENST00000551623 SCUBE2Q9NQ36 999 aa8.33□□□□□ -1.08
PTCH1-223ENST00000551623 FAM163AQ96GL9 167 aaPredicted RBP8.32□□□□□ -1.08
PTCH1-223ENST00000551623 CSRNP3Q8WYN3 585 aa8.31□□□□□ -1.08
PTCH1-223ENST00000551623 ATN1P54259 1190 aaPredicted RBP8.3□□□□□ -1.08
PTCH1-223ENST00000551623 TSPYL2Q9H2G4 693 aaPredicted RBP8.27□□□□□ -1.09
PTCH1-223ENST00000551623 CCDC61Q9Y6R9 512 aa8.26□□□□□ -1.09
PTCH1-223ENST00000551623 POTEFA5A3E0 1075 aa8.25□□□□□ -1.09
PTCH1-223ENST00000551623 KIF12Q96FN5 646 aa8.23□□□□□ -1.09
PTCH1-223ENST00000551623 BMP2KQ9NSY1 1161 aaPredicted RBP8.23□□□□□ -1.09
PTCH1-223ENST00000551623 TRPC6Q9Y210 931 aa8.2□□□□□ -1.1
PTCH1-223ENST00000551623 TIE1P35590 1138 aa8.19□□□□□ -1.1
PTCH1-223ENST00000551623 CDAN1Q8IWY9 1227 aa8.18□□□□□ -1.1
PTCH1-223ENST00000551623 MAP3K13O43283 966 aa8.16□□□□□ -1.1
PTCH1-223ENST00000551623 SEC24BO95487 1268 aa8.15□□□□□ -1.1
PTCH1-223ENST00000551623 COLQQ9Y215 455 aaPredicted RBP8.15□□□□□ -1.1
PTCH1-223ENST00000551623 TTLL13PA6NNM8 815 aa8.13□□□□□ -1.11
PTCH1-223ENST00000551623 PROM2Q8N271 834 aa8.12□□□□□ -1.11
PTCH1-223ENST00000551623 RASEFQ8IZ41 740 aa8.1□□□□□ -1.11
PTCH1-223ENST00000551623 IER5LQ5T953 404 aa8.09□□□□□ -1.11
PTCH1-223ENST00000551623 ST18O60284 1047 aa8.08□□□□□ -1.12
PTCH1-223ENST00000551623 PLEKHG5O94827 1062 aa8.08□□□□□ -1.12
PTCH1-223ENST00000551623 TRIM35Q9UPQ4 493 aa8.08□□□□□ -1.12
PTCH1-223ENST00000551623 SLAIN1Q8ND83 568 aa8.07□□□□□ -1.12
PTCH1-223ENST00000551623 SGIP1Q9BQI5 828 aa8.05□□□□□ -1.12
PTCH1-223ENST00000551623 MIER1Q8N108 512 aa8.03□□□□□ -1.12
PTCH1-223ENST00000551623 PCDHB13Q9Y5F0 798 aa8.03□□□□□ -1.12
PTCH1-223ENST00000551623 MMRN1Q13201 1228 aa8□□□□□ -1.13
PTCH1-223ENST00000551623 SPNS2Q8IVW8 549 aa7.99□□□□□ -1.13
PTCH1-223ENST00000551623 EHMT2Q96KQ7 1210 aa7.99□□□□□ -1.13
PTCH1-223ENST00000551623 PLCG2P16885 1265 aa7.98□□□□□ -1.13
PTCH1-223ENST00000551623 IFNL1Q8IU54 200 aa7.97□□□□□ -1.13
PTCH1-223ENST00000551623 TMEM106CQ9BVX2 250 aa7.97□□□□□ -1.13
PTCH1-223ENST00000551623 TMEM121BQ9BXQ6 578 aaPredicted RBP7.96□□□□□ -1.14
PTCH1-223ENST00000551623 IRX5P78411 483 aaPredicted RBP7.95□□□□□ -1.14
PTCH1-223ENST00000551623 NUBP1P53384 320 aa7.93□□□□□ -1.14
PTCH1-223ENST00000551623 PLCD3Q8N3E9 789 aa7.93□□□□□ -1.14
PTCH1-223ENST00000551623 SNPHO15079 494 aa7.92□□□□□ -1.14
PTCH1-223ENST00000551623 ZBTB47Q9UFB7 747 aaPredicted RBP7.91□□□□□ -1.14
PTCH1-223ENST00000551623 MARVELD3Q96A59 401 aa7.9□□□□□ -1.14
PTCH1-223ENST00000551623 FAM212AQ96EL1 285 aa7.89□□□□□ -1.15
PTCH1-223ENST00000551623 OCEL1Q9H607 264 aa7.89□□□□□ -1.15
PTCH1-223ENST00000551623 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.89□□□□□ -1.15
PTCH1-223ENST00000551623 EMP3P54852 163 aa7.81□□□□□ -1.16
PTCH1-223ENST00000551623 PYGBP11216 843 aa7.79□□□□□ -1.16
PTCH1-223ENST00000551623 KRTAP3-3Q9BYR6 98 aa7.79□□□□□ -1.16
PTCH1-223ENST00000551623 KRTAP3-2Q9BYR7 98 aa7.79□□□□□ -1.16
PTCH1-223ENST00000551623 C3orf67Q6ZVT6 689 aa7.78□□□□□ -1.16
PTCH1-223ENST00000551623 HS3ST6Q96QI5 342 aa7.78□□□□□ -1.16
PTCH1-223ENST00000551623 PCDHB8Q9UN66 801 aa7.78□□□□□ -1.16
PTCH1-223ENST00000551623 PDCD7Q8N8D1 485 aaKnown RBP7.77□□□□□ -1.17
PTCH1-223ENST00000551623 POTEB3A0JP26 581 aa7.76□□□□□ -1.17
PTCH1-223ENST00000551623 FAM205CA6NFA0 338 aa7.76□□□□□ -1.17
PTCH1-223ENST00000551623 DCAF8Q5TAQ9 597 aa7.76□□□□□ -1.17
PTCH1-223ENST00000551623 POTEBQ6S5H4 581 aa7.76□□□□□ -1.17
PTCH1-223ENST00000551623 L3MBTL3Q96JM7 780 aaPredicted RBP7.74□□□□□ -1.17
PTCH1-223ENST00000551623 GOLGA2Q08379 1002 aa7.71□□□□□ -1.18
PTCH1-223ENST00000551623 MKRN3Q13064 507 aaKnown RBP7.71□□□□□ -1.18
PTCH1-223ENST00000551623 ZNF467Q7Z7K2 595 aaPredicted RBP7.67□□□□□ -1.18
PTCH1-223ENST00000551623 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.67□□□□□ -1.18
PTCH1-223ENST00000551623 HOXB3P14651 431 aaPredicted RBP7.62□□□□□ -1.19
PTCH1-223ENST00000551623 ILDR1Q86SU0 546 aaPredicted RBP7.62□□□□□ -1.19
PTCH1-223ENST00000551623 RNF166Q96A37 237 aaPredicted RBP7.62□□□□□ -1.19
PTCH1-223ENST00000551623 PSEN1P49768 467 aa7.61□□□□□ -1.19
PTCH1-223ENST00000551623 GSE1Q14687 1217 aa7.61□□□□□ -1.19
PTCH1-223ENST00000551623 HOXB1P14653 301 aaPredicted RBP7.6□□□□□ -1.19
PTCH1-223ENST00000551623 DPY19L2Q6NUT2 758 aa7.6□□□□□ -1.19
PTCH1-223ENST00000551623 ZNF710Q8N1W2 664 aa7.59□□□□□ -1.19
PTCH1-223ENST00000551623 ERBB3P21860 1342 aa7.58□□□□□ -1.2
PTCH1-223ENST00000551623 G3V3G9 751 aa7.58□□□□□ -1.2
PTCH1-223ENST00000551623 CHRM1P11229 460 aaPredicted RBP7.58□□□□□ -1.2
PTCH1-223ENST00000551623 FKBP8Q14318 412 aa7.58□□□□□ -1.2
PTCH1-223ENST00000551623 BOLA1Q9Y3E2 137 aa7.58□□□□□ -1.2
PTCH1-223ENST00000551623 DOK7Q18PE1 504 aa7.56□□□□□ -1.2
PTCH1-223ENST00000551623 MYT1LQ9UL68 1186 aa7.55□□□□□ -1.2
PTCH1-223ENST00000551623 PDAP1Q13442 181 aaKnown RBP7.53□□□□□ -1.2
PTCH1-223ENST00000551623 KLHL34Q8N239 644 aa7.53□□□□□ -1.2
PTCH1-223ENST00000551623 CABP2Q9NPB3 220 aa7.53□□□□□ -1.2
PTCH1-223ENST00000551623 FBXO3Q9UK99 471 aa7.53□□□□□ -1.2
PTCH1-223ENST00000551623 VARS2Q5ST30 1063 aaKnown RBP7.52□□□□□ -1.21
PTCH1-223ENST00000551623 RIMBP2O15034 1052 aa7.51□□□□□ -1.21
PTCH1-223ENST00000551623 ZNF687Q8N1G0 1237 aa7.48□□□□□ -1.21
PTCH1-223ENST00000551623 PTGER2P43116 358 aa7.47□□□□□ -1.21
PTCH1-223ENST00000551623 VASPP50552 380 aaPredicted RBP7.46□□□□□ -1.22
PTCH1-223ENST00000551623 ZSWIM6Q9HCJ5 1215 aa7.46□□□□□ -1.22
PTCH1-223ENST00000551623 GPR153Q6NV75 609 aa7.41□□□□□ -1.22
PTCH1-223ENST00000551623 TMEM92Q6UXU6 159 aa7.41□□□□□ -1.22
PTCH1-223ENST00000551623 ANKRD13DQ6ZTN6 518 aa7.39□□□□□ -1.23
PTCH1-223ENST00000551623 MICALL2Q8IY33 904 aa7.39□□□□□ -1.23
PTCH1-223ENST00000551623 EFCAB3Q8N7B9 438 aa7.39□□□□□ -1.23
PTCH1-223ENST00000551623 CIZ1Q9ULV3 898 aaPredicted RBP7.38□□□□□ -1.23
PTCH1-223ENST00000551623 ARSIQ5FYB1 569 aa7.35□□□□□ -1.23
PTCH1-223ENST00000551623 LSM11P83369 360 aaKnown RBP eCLIP7.34□□□□□ -1.23
PTCH1-223ENST00000551623 SPOCK2Q92563 424 aa7.34□□□□□ -1.23
PTCH1-223ENST00000551623 ZNF316A6NFI3 1004 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms