RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 METRNQ9UJH8 293 aa7.33□□□□□ -1.24
LIMA1-207ENST00000551486 ASTLQ6HA08 431 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-207ENST00000551486 PELP1Q8IZL8 1130 aaKnown RBP7.31□□□□□ -1.24
LIMA1-207ENST00000551486 ATMINO43313 823 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-207ENST00000551486 MNX1P50219 401 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-207ENST00000551486 MS4A3Q96HJ5 214 aa7.29□□□□□ -1.24
LIMA1-207ENST00000551486 SCUBE2Q9NQ36 999 aa7.28□□□□□ -1.24
LIMA1-207ENST00000551486 PLEKHG5O94827 1062 aa7.27□□□□□ -1.25
LIMA1-207ENST00000551486 TSPYL2Q9H2G4 693 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-207ENST00000551486 FAM163AQ96GL9 167 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-207ENST00000551486 EHMT2Q96KQ7 1210 aa7.22□□□□□ -1.25
LIMA1-207ENST00000551486 CDAN1Q8IWY9 1227 aa7.21□□□□□ -1.26
LIMA1-207ENST00000551486 ATN1P54259 1190 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-207ENST00000551486 CCDC61Q9Y6R9 512 aa7.2□□□□□ -1.26
LIMA1-207ENST00000551486 KIF12Q96FN5 646 aa7.19□□□□□ -1.26
LIMA1-207ENST00000551486 SEC24BO95487 1268 aa7.18□□□□□ -1.26
LIMA1-207ENST00000551486 POTEJP0CG39 1038 aa7.18□□□□□ -1.26
LIMA1-207ENST00000551486 TIE1P35590 1138 aa7.16□□□□□ -1.26
LIMA1-207ENST00000551486 MIER1Q8N108 512 aa7.16□□□□□ -1.26
LIMA1-207ENST00000551486 BMP2KQ9NSY1 1161 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-207ENST00000551486 MMRN1Q13201 1228 aa7.14□□□□□ -1.27
LIMA1-207ENST00000551486 MAP3K13O43283 966 aa7.13□□□□□ -1.27
LIMA1-207ENST00000551486 PROM2Q8N271 834 aa7.13□□□□□ -1.27
LIMA1-207ENST00000551486 SGIP1Q9BQI5 828 aa7.1□□□□□ -1.27
LIMA1-207ENST00000551486 ZBTB47Q9UFB7 747 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-207ENST00000551486 IER5LQ5T953 404 aa7.09□□□□□ -1.27
LIMA1-207ENST00000551486 PLCD3Q8N3E9 789 aa7.09□□□□□ -1.27
LIMA1-207ENST00000551486 POTEFA5A3E0 1075 aa7.08□□□□□ -1.28
LIMA1-207ENST00000551486 TTLL13PA6NNM8 815 aa7.08□□□□□ -1.28
LIMA1-207ENST00000551486 RASEFQ8IZ41 740 aa7.08□□□□□ -1.28
LIMA1-207ENST00000551486 TRPC6Q9Y210 931 aa7.08□□□□□ -1.28
LIMA1-207ENST00000551486 PCDHB13Q9Y5F0 798 aa7.07□□□□□ -1.28
LIMA1-207ENST00000551486 SPNS2Q8IVW8 549 aa7.06□□□□□ -1.28
LIMA1-207ENST00000551486 TRIM35Q9UPQ4 493 aa7.06□□□□□ -1.28
LIMA1-207ENST00000551486 COLQQ9Y215 455 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-207ENST00000551486 SLAIN1Q8ND83 568 aa7.04□□□□□ -1.28
LIMA1-207ENST00000551486 PLCG2P16885 1265 aa7.02□□□□□ -1.29
LIMA1-207ENST00000551486 FAM212AQ96EL1 285 aa7.01□□□□□ -1.29
LIMA1-207ENST00000551486 TMEM106CQ9BVX2 250 aa7□□□□□ -1.29
LIMA1-207ENST00000551486 SNPHO15079 494 aa6.98□□□□□ -1.29
LIMA1-207ENST00000551486 ST18O60284 1047 aa6.98□□□□□ -1.29
LIMA1-207ENST00000551486 IFNL1Q8IU54 200 aa6.97□□□□□ -1.29
LIMA1-207ENST00000551486 NUBP1P53384 320 aa6.95□□□□□ -1.3
LIMA1-207ENST00000551486 TMEM121BQ9BXQ6 578 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-207ENST00000551486 OCEL1Q9H607 264 aa6.94□□□□□ -1.3
LIMA1-207ENST00000551486 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.94□□□□□ -1.3
LIMA1-207ENST00000551486 DCAF8Q5TAQ9 597 aa6.92□□□□□ -1.3
LIMA1-207ENST00000551486 IRX5P78411 483 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-207ENST00000551486 GOLGA2Q08379 1002 aa6.88□□□□□ -1.31
LIMA1-207ENST00000551486 PYGBP11216 843 aa6.86□□□□□ -1.31
LIMA1-207ENST00000551486 C3orf67Q6ZVT6 689 aa6.86□□□□□ -1.31
LIMA1-207ENST00000551486 L3MBTL3Q96JM7 780 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-207ENST00000551486 MKRN3Q13064 507 aaKnown RBP6.84□□□□□ -1.31
LIMA1-207ENST00000551486 MARVELD3Q96A59 401 aa6.83□□□□□ -1.32
LIMA1-207ENST00000551486 EMP3P54852 163 aa6.82□□□□□ -1.32
LIMA1-207ENST00000551486 FBXO3Q9UK99 471 aa6.82□□□□□ -1.32
LIMA1-207ENST00000551486 PCDHB8Q9UN66 801 aa6.82□□□□□ -1.32
LIMA1-207ENST00000551486 ZNF467Q7Z7K2 595 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-207ENST00000551486 GSE1Q14687 1217 aa6.8□□□□□ -1.32
LIMA1-207ENST00000551486 FKBP8Q14318 412 aa6.79□□□□□ -1.32
LIMA1-207ENST00000551486 KLHL34Q8N239 644 aa6.79□□□□□ -1.32
LIMA1-207ENST00000551486 G3V3G9 751 aa6.78□□□□□ -1.32
LIMA1-207ENST00000551486 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.77□□□□□ -1.33
LIMA1-207ENST00000551486 FAM205CA6NFA0 338 aa6.75□□□□□ -1.33
LIMA1-207ENST00000551486 PDCD7Q8N8D1 485 aaKnown RBP6.75□□□□□ -1.33
LIMA1-207ENST00000551486 HS3ST6Q96QI5 342 aa6.74□□□□□ -1.33
LIMA1-207ENST00000551486 PSEN1P49768 467 aa6.73□□□□□ -1.33
LIMA1-207ENST00000551486 CHRM1P11229 460 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-207ENST00000551486 ZNF710Q8N1W2 664 aa6.7□□□□□ -1.34
LIMA1-207ENST00000551486 KRTAP3-3Q9BYR6 98 aa6.69□□□□□ -1.34
LIMA1-207ENST00000551486 KRTAP3-2Q9BYR7 98 aa6.69□□□□□ -1.34
LIMA1-207ENST00000551486 PDAP1Q13442 181 aaKnown RBP6.68□□□□□ -1.34
LIMA1-207ENST00000551486 DOK7Q18PE1 504 aa6.67□□□□□ -1.34
LIMA1-207ENST00000551486 BOLA1Q9Y3E2 137 aa6.67□□□□□ -1.34
LIMA1-207ENST00000551486 RIMBP2O15034 1052 aa6.66□□□□□ -1.34
LIMA1-207ENST00000551486 ERBB3P21860 1342 aa6.66□□□□□ -1.34
LIMA1-207ENST00000551486 VASPP50552 380 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-207ENST00000551486 CABP2Q9NPB3 220 aa6.65□□□□□ -1.34
LIMA1-207ENST00000551486 POTEB3A0JP26 581 aa6.64□□□□□ -1.35
LIMA1-207ENST00000551486 POTEBQ6S5H4 581 aa6.64□□□□□ -1.35
LIMA1-207ENST00000551486 HOXB1P14653 301 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-207ENST00000551486 ILDR1Q86SU0 546 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-207ENST00000551486 DPY19L2Q6NUT2 758 aa6.62□□□□□ -1.35
LIMA1-207ENST00000551486 CIZ1Q9ULV3 898 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-207ENST00000551486 RNF166Q96A37 237 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-207ENST00000551486 HOXB3P14651 431 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-207ENST00000551486 SPOCK2Q92563 424 aa6.59□□□□□ -1.35
LIMA1-207ENST00000551486 ZSWIM6Q9HCJ5 1215 aa6.57□□□□□ -1.36
LIMA1-207ENST00000551486 MYT1LQ9UL68 1186 aa6.57□□□□□ -1.36
LIMA1-207ENST00000551486 PTGER2P43116 358 aa6.56□□□□□ -1.36
LIMA1-207ENST00000551486 VARS2Q5ST30 1063 aaKnown RBP6.56□□□□□ -1.36
LIMA1-207ENST00000551486 TRIM41Q8WV44 630 aa6.54□□□□□ -1.36
LIMA1-207ENST00000551486 ZNF687Q8N1G0 1237 aa6.53□□□□□ -1.36
LIMA1-207ENST00000551486 EFCAB3Q8N7B9 438 aa6.51□□□□□ -1.37
LIMA1-207ENST00000551486 SOX12O15370 315 aa6.49□□□□□ -1.37
LIMA1-207ENST00000551486 MICALL2Q8IY33 904 aa6.49□□□□□ -1.37
LIMA1-207ENST00000551486 ANKRD13DQ6ZTN6 518 aa6.48□□□□□ -1.37
LIMA1-207ENST00000551486 IFNLR1Q8IU57 520 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-207ENST00000551486 GPR153Q6NV75 609 aa6.46□□□□□ -1.38
LIMA1-207ENST00000551486 ZNF316A6NFI3 1004 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms