RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 C7P10643 843 aa11.26□□□□□ -0.61
LIMA1-206ENST00000550611 SLC39A7Q92504 469 aa11.26□□□□□ -0.61
LIMA1-206ENST00000550611 METRNQ9UJH8 293 aa11.25□□□□□ -0.61
LIMA1-206ENST00000550611 POTEMA6NI47 508 aa11.21□□□□□ -0.61
LIMA1-206ENST00000550611 CCDC61Q9Y6R9 512 aa11.2□□□□□ -0.62
LIMA1-206ENST00000550611 MAMSTRQ6ZN01 415 aa11.19□□□□□ -0.62
LIMA1-206ENST00000550611 TSPYL2Q9H2G4 693 aaPredicted RBP11.19□□□□□ -0.62
LIMA1-206ENST00000550611 POTEJP0CG39 1038 aa11.17□□□□□ -0.62
LIMA1-206ENST00000550611 POTEGQ6S5H5 508 aa11.17□□□□□ -0.62
LIMA1-206ENST00000550611 KIF12Q96FN5 646 aa11.15□□□□□ -0.62
LIMA1-206ENST00000550611 ATN1P54259 1190 aaPredicted RBP11.13□□□□□ -0.63
LIMA1-206ENST00000550611 PCDH10Q9P2E7 1040 aa11.13□□□□□ -0.63
LIMA1-206ENST00000550611 PLEKHG5O94827 1062 aa11.09□□□□□ -0.63
LIMA1-206ENST00000550611 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
LIMA1-206ENST00000550611 BMP2KQ9NSY1 1161 aaPredicted RBP11.08□□□□□ -0.64
LIMA1-206ENST00000550611 TIE1P35590 1138 aa11.07□□□□□ -0.64
LIMA1-206ENST00000550611 MAP3K13O43283 966 aa11.04□□□□□ -0.64
LIMA1-206ENST00000550611 MIER1Q8N108 512 aa11.04□□□□□ -0.64
LIMA1-206ENST00000550611 POTEFA5A3E0 1075 aa11.03□□□□□ -0.64
LIMA1-206ENST00000550611 LCE2DQ5TA82 110 aaPredicted RBP11.03□□□□□ -0.64
LIMA1-206ENST00000550611 RASEFQ8IZ41 740 aa11.03□□□□□ -0.64
LIMA1-206ENST00000550611 TRPC6Q9Y210 931 aa11.02□□□□□ -0.65
LIMA1-206ENST00000550611 FAM163AQ96GL9 167 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-206ENST00000550611 SGIP1Q9BQI5 828 aa10.98□□□□□ -0.65
LIMA1-206ENST00000550611 TTLL13PA6NNM8 815 aa10.97□□□□□ -0.65
LIMA1-206ENST00000550611 IER5LQ5T953 404 aa10.94□□□□□ -0.66
LIMA1-206ENST00000550611 COLQQ9Y215 455 aaPredicted RBP10.94□□□□□ -0.66
LIMA1-206ENST00000550611 SEC24BO95487 1268 aa10.93□□□□□ -0.66
LIMA1-206ENST00000550611 PLCD3Q8N3E9 789 aa10.92□□□□□ -0.66
LIMA1-206ENST00000550611 ZBTB47Q9UFB7 747 aaPredicted RBP10.92□□□□□ -0.66
LIMA1-206ENST00000550611 PCDHB13Q9Y5F0 798 aa10.9□□□□□ -0.66
LIMA1-206ENST00000550611 TRIM35Q9UPQ4 493 aa10.89□□□□□ -0.67
LIMA1-206ENST00000550611 NUBP1P53384 320 aa10.88□□□□□ -0.67
LIMA1-206ENST00000550611 IFNL1Q8IU54 200 aa10.83□□□□□ -0.68
LIMA1-206ENST00000550611 FAM212AQ96EL1 285 aa10.81□□□□□ -0.68
LIMA1-206ENST00000550611 TMEM106CQ9BVX2 250 aa10.79□□□□□ -0.68
LIMA1-206ENST00000550611 PLCG2P16885 1265 aa10.76□□□□□ -0.69
LIMA1-206ENST00000550611 CDAN1Q8IWY9 1227 aa10.76□□□□□ -0.69
LIMA1-206ENST00000550611 SLAIN1Q8ND83 568 aa10.76□□□□□ -0.69
LIMA1-206ENST00000550611 IRX5P78411 483 aaPredicted RBP10.74□□□□□ -0.69
LIMA1-206ENST00000550611 ST18O60284 1047 aa10.72□□□□□ -0.69
LIMA1-206ENST00000550611 OCEL1Q9H607 264 aa10.69□□□□□ -0.7
LIMA1-206ENST00000550611 TMEM121BQ9BXQ6 578 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-206ENST00000550611 FKBP8Q14318 412 aa10.64□□□□□ -0.71
LIMA1-206ENST00000550611 DCAF8Q5TAQ9 597 aa10.64□□□□□ -0.71
LIMA1-206ENST00000550611 SNPHO15079 494 aa10.63□□□□□ -0.71
LIMA1-206ENST00000550611 PYGBP11216 843 aa10.62□□□□□ -0.71
LIMA1-206ENST00000550611 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.6□□□□□ -0.71
LIMA1-206ENST00000550611 FBXO3Q9UK99 471 aa10.59□□□□□ -0.71
LIMA1-206ENST00000550611 PCDHB8Q9UN66 801 aa10.59□□□□□ -0.71
LIMA1-206ENST00000550611 ZNF467Q7Z7K2 595 aaPredicted RBP10.54□□□□□ -0.72
LIMA1-206ENST00000550611 PDCD7Q8N8D1 485 aaKnown RBP10.54□□□□□ -0.72
LIMA1-206ENST00000550611 GSE1Q14687 1217 aa10.52□□□□□ -0.73
LIMA1-206ENST00000550611 CHRM1P11229 460 aaPredicted RBP10.51□□□□□ -0.73
LIMA1-206ENST00000550611 MMRN1Q13201 1228 aa10.51□□□□□ -0.73
LIMA1-206ENST00000550611 SPNS2Q8IVW8 549 aa10.51□□□□□ -0.73
LIMA1-206ENST00000550611 L3MBTL3Q96JM7 780 aaPredicted RBP10.5□□□□□ -0.73
LIMA1-206ENST00000550611 MARVELD3Q96A59 401 aa10.49□□□□□ -0.73
LIMA1-206ENST00000550611 MKRN3Q13064 507 aaKnown RBP10.48□□□□□ -0.73
LIMA1-206ENST00000550611 C3orf67Q6ZVT6 689 aa10.48□□□□□ -0.73
LIMA1-206ENST00000550611 GOLGA2Q08379 1002 aa10.47□□□□□ -0.73
LIMA1-206ENST00000550611 VASPP50552 380 aaPredicted RBP10.45□□□□□ -0.74
LIMA1-206ENST00000550611 KLHL34Q8N239 644 aa10.44□□□□□ -0.74
LIMA1-206ENST00000550611 PSEN1P49768 467 aa10.43□□□□□ -0.74
LIMA1-206ENST00000550611 ILDR1Q86SU0 546 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-206ENST00000550611 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIMA1-206ENST00000550611 EMP3P54852 163 aa10.41□□□□□ -0.74
LIMA1-206ENST00000550611 PDAP1Q13442 181 aaKnown RBP10.37□□□□□ -0.75
LIMA1-206ENST00000550611 HS3ST6Q96QI5 342 aa10.35□□□□□ -0.75
LIMA1-206ENST00000550611 POTEB3A0JP26 581 aa10.34□□□□□ -0.75
LIMA1-206ENST00000550611 POTEBQ6S5H4 581 aa10.34□□□□□ -0.75
LIMA1-206ENST00000550611 KRTAP3-3Q9BYR6 98 aa10.34□□□□□ -0.75
LIMA1-206ENST00000550611 KRTAP3-2Q9BYR7 98 aa10.34□□□□□ -0.75
LIMA1-206ENST00000550611 FAM205CA6NFA0 338 aa10.31□□□□□ -0.76
LIMA1-206ENST00000550611 DPY19L2Q6NUT2 758 aa10.3□□□□□ -0.76
LIMA1-206ENST00000550611 BOLA1Q9Y3E2 137 aa10.29□□□□□ -0.76
LIMA1-206ENST00000550611 HOXB3P14651 431 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-206ENST00000550611 G3V3G9 751 aa10.27□□□□□ -0.77
LIMA1-206ENST00000550611 SPOCK2Q92563 424 aa10.27□□□□□ -0.77
LIMA1-206ENST00000550611 CABP2Q9NPB3 220 aa10.27□□□□□ -0.77
LIMA1-206ENST00000550611 HOXB1P14653 301 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-206ENST00000550611 CIZ1Q9ULV3 898 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-206ENST00000550611 DOK7Q18PE1 504 aa10.21□□□□□ -0.77
LIMA1-206ENST00000550611 IFNLR1Q8IU57 520 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-206ENST00000550611 ZNF710Q8N1W2 664 aa10.2□□□□□ -0.78
LIMA1-206ENST00000550611 TRIM41Q8WV44 630 aa10.16□□□□□ -0.78
LIMA1-206ENST00000550611 ERBB3P21860 1342 aa10.15□□□□□ -0.78
LIMA1-206ENST00000550611 RIMBP2O15034 1052 aa10.15□□□□□ -0.78
LIMA1-206ENST00000550611 EFCAB3Q8N7B9 438 aa10.12□□□□□ -0.79
LIMA1-206ENST00000550611 ZSWIM6Q9HCJ5 1215 aa10.12□□□□□ -0.79
LIMA1-206ENST00000550611 MICALL2Q8IY33 904 aa10.09□□□□□ -0.79
LIMA1-206ENST00000550611 VARS2Q5ST30 1063 aaKnown RBP10.08□□□□□ -0.8
LIMA1-206ENST00000550611 RNF166Q96A37 237 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-206ENST00000550611 SOX12O15370 315 aa10.06□□□□□ -0.8
LIMA1-206ENST00000550611 TMEM92Q6UXU6 159 aa10.06□□□□□ -0.8
LIMA1-206ENST00000550611 ZNF687Q8N1G0 1237 aa10.05□□□□□ -0.8
LIMA1-206ENST00000550611 GPR153Q6NV75 609 aa10.04□□□□□ -0.8
LIMA1-206ENST00000550611 MYT1LQ9UL68 1186 aa10.03□□□□□ -0.8
LIMA1-206ENST00000550611 MS4A4AQ96JQ5 239 aa10.01□□□□□ -0.81
LIMA1-206ENST00000550611 RIOK3O14730 519 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms