RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 METRNQ9UJH8 293 aa13.39□□□□□ -0.27
VPS29-205ENST00000548539 ATMINO43313 823 aaPredicted RBP13.38□□□□□ -0.27
VPS29-205ENST00000548539 SLC39A7Q92504 469 aa13.38□□□□□ -0.27
VPS29-205ENST00000548539 C7P10643 843 aa13.37□□□□□ -0.27
VPS29-205ENST00000548539 PLEKHG5O94827 1062 aa13.33□□□□□ -0.28
VPS29-205ENST00000548539 CCDC61Q9Y6R9 512 aa13.33□□□□□ -0.28
VPS29-205ENST00000548539 MIER1Q8N108 512 aa13.3□□□□□ -0.28
VPS29-205ENST00000548539 POTEMA6NI47 508 aa13.28□□□□□ -0.28
VPS29-205ENST00000548539 KIF12Q96FN5 646 aa13.28□□□□□ -0.28
VPS29-205ENST00000548539 MAMSTRQ6ZN01 415 aa13.27□□□□□ -0.29
VPS29-205ENST00000548539 ATN1P54259 1190 aaPredicted RBP13.26□□□□□ -0.29
VPS29-205ENST00000548539 POTEJP0CG39 1038 aa13.24□□□□□ -0.29
VPS29-205ENST00000548539 POTEGQ6S5H5 508 aa13.24□□□□□ -0.29
VPS29-205ENST00000548539 MAP3K13O43283 966 aa13.19□□□□□ -0.3
VPS29-205ENST00000548539 RASEFQ8IZ41 740 aa13.19□□□□□ -0.3
VPS29-205ENST00000548539 SCUBE2Q9NQ36 999 aa13.19□□□□□ -0.3
VPS29-205ENST00000548539 BMP2KQ9NSY1 1161 aaPredicted RBP13.19□□□□□ -0.3
VPS29-205ENST00000548539 TRPC6Q9Y210 931 aa13.17□□□□□ -0.3
VPS29-205ENST00000548539 TIE1P35590 1138 aa13.16□□□□□ -0.3
VPS29-205ENST00000548539 PLCD3Q8N3E9 789 aa13.16□□□□□ -0.3
VPS29-205ENST00000548539 PCDH10Q9P2E7 1040 aa13.11□□□□□ -0.31
VPS29-205ENST00000548539 POTEFA5A3E0 1075 aa13.1□□□□□ -0.31
VPS29-205ENST00000548539 FAM163AQ96GL9 167 aaPredicted RBP13.1□□□□□ -0.31
VPS29-205ENST00000548539 ZBTB47Q9UFB7 747 aaPredicted RBP13.08□□□□□ -0.32
VPS29-205ENST00000548539 TTLL13PA6NNM8 815 aa13.07□□□□□ -0.32
VPS29-205ENST00000548539 SEC24BO95487 1268 aa13.07□□□□□ -0.32
VPS29-205ENST00000548539 SGIP1Q9BQI5 828 aa13.05□□□□□ -0.32
VPS29-205ENST00000548539 PCDHB13Q9Y5F0 798 aa13.04□□□□□ -0.32
VPS29-205ENST00000548539 COLQQ9Y215 455 aaPredicted RBP13.02□□□□□ -0.33
VPS29-205ENST00000548539 LCE2DQ5TA82 110 aaPredicted RBP13.01□□□□□ -0.33
VPS29-205ENST00000548539 NUBP1P53384 320 aa13□□□□□ -0.33
VPS29-205ENST00000548539 TRIM35Q9UPQ4 493 aa13□□□□□ -0.33
VPS29-205ENST00000548539 IER5LQ5T953 404 aa12.98□□□□□ -0.33
VPS29-205ENST00000548539 FAM212AQ96EL1 285 aa12.96□□□□□ -0.33
VPS29-205ENST00000548539 IFNL1Q8IU54 200 aa12.94□□□□□ -0.34
VPS29-205ENST00000548539 TMEM106CQ9BVX2 250 aa12.9□□□□□ -0.34
VPS29-205ENST00000548539 FKBP8Q14318 412 aa12.88□□□□□ -0.35
VPS29-205ENST00000548539 PLCG2P16885 1265 aa12.85□□□□□ -0.35
VPS29-205ENST00000548539 SLAIN1Q8ND83 568 aa12.84□□□□□ -0.35
VPS29-205ENST00000548539 DCAF8Q5TAQ9 597 aa12.82□□□□□ -0.36
VPS29-205ENST00000548539 CDAN1Q8IWY9 1227 aa12.78□□□□□ -0.36
VPS29-205ENST00000548539 PYGBP11216 843 aa12.77□□□□□ -0.37
VPS29-205ENST00000548539 IRX5P78411 483 aaPredicted RBP12.77□□□□□ -0.37
VPS29-205ENST00000548539 OCEL1Q9H607 264 aa12.74□□□□□ -0.37
VPS29-205ENST00000548539 FBXO3Q9UK99 471 aa12.74□□□□□ -0.37
VPS29-205ENST00000548539 ST18O60284 1047 aa12.73□□□□□ -0.37
VPS29-205ENST00000548539 PCDHB8Q9UN66 801 aa12.7□□□□□ -0.38
VPS29-205ENST00000548539 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.66□□□□□ -0.38
VPS29-205ENST00000548539 SNPHO15079 494 aa12.64□□□□□ -0.39
VPS29-205ENST00000548539 KLHL34Q8N239 644 aa12.64□□□□□ -0.39
VPS29-205ENST00000548539 GSE1Q14687 1217 aa12.62□□□□□ -0.39
VPS29-205ENST00000548539 TMEM121BQ9BXQ6 578 aaPredicted RBP12.61□□□□□ -0.39
VPS29-205ENST00000548539 ZNF467Q7Z7K2 595 aaPredicted RBP12.6□□□□□ -0.39
VPS29-205ENST00000548539 GOLGA2Q08379 1002 aa12.59□□□□□ -0.39
VPS29-205ENST00000548539 MKRN3Q13064 507 aaKnown RBP12.57□□□□□ -0.4
VPS29-205ENST00000548539 VASPP50552 380 aaPredicted RBP12.56□□□□□ -0.4
VPS29-205ENST00000548539 C3orf67Q6ZVT6 689 aa12.53□□□□□ -0.4
VPS29-205ENST00000548539 PDCD7Q8N8D1 485 aaKnown RBP12.53□□□□□ -0.4
VPS29-205ENST00000548539 L3MBTL3Q96JM7 780 aaPredicted RBP12.53□□□□□ -0.4
VPS29-205ENST00000548539 CHRM1P11229 460 aaPredicted RBP12.52□□□□□ -0.41
VPS29-205ENST00000548539 MARVELD3Q96A59 401 aa12.52□□□□□ -0.41
VPS29-205ENST00000548539 PSEN1P49768 467 aa12.49□□□□□ -0.41
VPS29-205ENST00000548539 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS29-205ENST00000548539 SPNS2Q8IVW8 549 aa12.46□□□□□ -0.41
VPS29-205ENST00000548539 MMRN1Q13201 1228 aa12.45□□□□□ -0.42
VPS29-205ENST00000548539 EMP3P54852 163 aa12.41□□□□□ -0.42
VPS29-205ENST00000548539 PDAP1Q13442 181 aaKnown RBP12.41□□□□□ -0.42
VPS29-205ENST00000548539 CIZ1Q9ULV3 898 aaPredicted RBP12.37□□□□□ -0.43
VPS29-205ENST00000548539 G3V3G9 751 aa12.35□□□□□ -0.43
VPS29-205ENST00000548539 ILDR1Q86SU0 546 aaPredicted RBP12.35□□□□□ -0.43
VPS29-205ENST00000548539 SPOCK2Q92563 424 aa12.34□□□□□ -0.43
VPS29-205ENST00000548539 CABP2Q9NPB3 220 aa12.34□□□□□ -0.43
VPS29-205ENST00000548539 DPY19L2Q6NUT2 758 aa12.33□□□□□ -0.44
VPS29-205ENST00000548539 FAM205CA6NFA0 338 aa12.32□□□□□ -0.44
VPS29-205ENST00000548539 HS3ST6Q96QI5 342 aa12.32□□□□□ -0.44
VPS29-205ENST00000548539 BOLA1Q9Y3E2 137 aa12.31□□□□□ -0.44
VPS29-205ENST00000548539 IFNLR1Q8IU57 520 aaPredicted RBP12.29□□□□□ -0.44
VPS29-205ENST00000548539 POTEB3A0JP26 581 aa12.27□□□□□ -0.45
VPS29-205ENST00000548539 POTEBQ6S5H4 581 aa12.27□□□□□ -0.45
VPS29-205ENST00000548539 KRTAP3-3Q9BYR6 98 aa12.25□□□□□ -0.45
VPS29-205ENST00000548539 KRTAP3-2Q9BYR7 98 aa12.25□□□□□ -0.45
VPS29-205ENST00000548539 ZNF710Q8N1W2 664 aa12.22□□□□□ -0.45
VPS29-205ENST00000548539 HOXB3P14651 431 aaPredicted RBP12.21□□□□□ -0.45
VPS29-205ENST00000548539 DOK7Q18PE1 504 aa12.18□□□□□ -0.46
VPS29-205ENST00000548539 HOXB1P14653 301 aaPredicted RBP12.17□□□□□ -0.46
VPS29-205ENST00000548539 TRIM41Q8WV44 630 aa12.16□□□□□ -0.46
VPS29-205ENST00000548539 EFCAB3Q8N7B9 438 aa12.15□□□□□ -0.46
VPS29-205ENST00000548539 ERBB3P21860 1342 aa12.13□□□□□ -0.47
VPS29-205ENST00000548539 RIMBP2O15034 1052 aa12.12□□□□□ -0.47
VPS29-205ENST00000548539 MICALL2Q8IY33 904 aa12.05□□□□□ -0.48
VPS29-205ENST00000548539 VARS2Q5ST30 1063 aaKnown RBP12.04□□□□□ -0.48
VPS29-205ENST00000548539 SOX12O15370 315 aa12.03□□□□□ -0.48
VPS29-205ENST00000548539 ZSWIM6Q9HCJ5 1215 aa12.02□□□□□ -0.49
VPS29-205ENST00000548539 RIOK3O14730 519 aaKnown RBP12.01□□□□□ -0.49
VPS29-205ENST00000548539 TMEM92Q6UXU6 159 aa12□□□□□ -0.49
VPS29-205ENST00000548539 RNF166Q96A37 237 aaPredicted RBP11.98□□□□□ -0.49
VPS29-205ENST00000548539 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.96□□□□□ -0.49
VPS29-205ENST00000548539 ZNF687Q8N1G0 1237 aa11.96□□□□□ -0.49
VPS29-205ENST00000548539 ZFP91Q96JP5 570 aaPredicted RBP11.96□□□□□ -0.49
VPS29-205ENST00000548539 VGFO15240 615 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms