RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 IGSF3O75054 1194 aa12.62□□□□□ -0.39
VPS13D-212ENST00000543766 YTHDC1Q96MU7 727 aaKnown RBP12.61□□□□□ -0.39
VPS13D-212ENST00000543766 CHMP4BQ9H444 224 aaKnown RBP12.6□□□□□ -0.39
VPS13D-212ENST00000543766 CC2D2AQ9P2K1 1620 aa12.59□□□□□ -0.39
VPS13D-212ENST00000543766 ZNF526Q8TF50 670 aaPredicted RBP12.59□□□□□ -0.39
VPS13D-212ENST00000543766 NAP1L2Q9ULW6 460 aaPredicted RBP12.58□□□□□ -0.4
VPS13D-212ENST00000543766 CNKSR2Q8WXI2 1034 aa12.58□□□□□ -0.4
VPS13D-212ENST00000543766 HSP90B1P14625 803 aaKnown RBP12.57□□□□□ -0.4
VPS13D-212ENST00000543766 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS13D-212ENST00000543766 ARID3AQ99856 593 aa12.56□□□□□ -0.4
VPS13D-212ENST00000543766 CCDC9Q9Y3X0 531 aaKnown RBP12.56□□□□□ -0.4
VPS13D-212ENST00000543766 PPP6R1Q9UPN7 881 aa12.55□□□□□ -0.4
VPS13D-212ENST00000543766 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
VPS13D-212ENST00000543766 PLCB2Q00722 1185 aa12.54□□□□□ -0.4
VPS13D-212ENST00000543766 DNAJC5BQ9UF47 199 aa12.52□□□□□ -0.41
VPS13D-212ENST00000543766 RSPH6AQ9H0K4 717 aa12.51□□□□□ -0.41
VPS13D-212ENST00000543766 PABPN1Q86U42 306 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS13D-212ENST00000543766 BRPF3Q9ULD4 1205 aa12.48□□□□□ -0.41
VPS13D-212ENST00000543766 CNPY4Q8N129 248 aa12.48□□□□□ -0.41
VPS13D-212ENST00000543766 BBXQ8WY36 941 aaPredicted RBP12.47□□□□□ -0.41
VPS13D-212ENST00000543766 RSPH4AQ5TD94 716 aa12.46□□□□□ -0.42
VPS13D-212ENST00000543766 DIEXFQ68CQ4 756 aaKnown RBP12.46□□□□□ -0.42
VPS13D-212ENST00000543766 IL27Q8NEV9 243 aa12.46□□□□□ -0.42
VPS13D-212ENST00000543766 ZFP91Q96JP5 570 aaPredicted RBP12.46□□□□□ -0.42
VPS13D-212ENST00000543766 RTL5Q5HYW3 569 aaPredicted RBP12.44□□□□□ -0.42
VPS13D-212ENST00000543766 TRIM41Q8WV44 630 aa12.44□□□□□ -0.42
VPS13D-212ENST00000543766 WWC1Q8IX03 1113 aa12.43□□□□□ -0.42
VPS13D-212ENST00000543766 TSHZ2Q9NRE2 1034 aa12.43□□□□□ -0.42
VPS13D-212ENST00000543766 ZNF592Q92610 1267 aa12.41□□□□□ -0.42
VPS13D-212ENST00000543766 HMGXB3Q12766 1538 aa12.4□□□□□ -0.42
VPS13D-212ENST00000543766 NCLP19338 710 aaKnown RBP12.4□□□□□ -0.42
VPS13D-212ENST00000543766 BCCIPQ9P287 314 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS13D-212ENST00000543766 PATL2C9JE40 543 aaKnown RBP12.37□□□□□ -0.43
VPS13D-212ENST00000543766 USP35Q9P2H5 1018 aa12.37□□□□□ -0.43
VPS13D-212ENST00000543766 RSF1Q96T23 1441 aaPredicted RBP12.35□□□□□ -0.43
VPS13D-212ENST00000543766 PLCD3Q8N3E9 789 aa12.35□□□□□ -0.43
VPS13D-212ENST00000543766 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
VPS13D-212ENST00000543766 SECISBP2LQ93073 1101 aaKnown RBP12.32□□□□□ -0.44
VPS13D-212ENST00000543766 CANXP27824 592 aaKnown RBP12.31□□□□□ -0.44
VPS13D-212ENST00000543766 NBR1Q14596 966 aa12.3□□□□□ -0.44
VPS13D-212ENST00000543766 PRDM2Q13029 1718 aa12.29□□□□□ -0.44
VPS13D-212ENST00000543766 ADRA2BP18089 450 aa12.29□□□□□ -0.44
VPS13D-212ENST00000543766 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.29□□□□□ -0.44
VPS13D-212ENST00000543766 CNGB1Q14028 1251 aaPredicted RBP12.27□□□□□ -0.45
VPS13D-212ENST00000543766 TMED8Q6PL24 325 aaPredicted RBP12.27□□□□□ -0.45
VPS13D-212ENST00000543766 SMARCA4P51532 1647 aa12.27□□□□□ -0.45
VPS13D-212ENST00000543766 NCAPD3P42695 1498 aa12.25□□□□□ -0.45
VPS13D-212ENST00000543766 FBLN2P98095 1184 aa12.25□□□□□ -0.45
VPS13D-212ENST00000543766 ARID4BQ4LE39 1312 aaPredicted RBP12.24□□□□□ -0.45
VPS13D-212ENST00000543766 THOC2Q8NI27 1593 aaKnown RBP12.24□□□□□ -0.45
VPS13D-212ENST00000543766 BAZ1AQ9NRL2 1556 aaPredicted RBP12.22□□□□□ -0.45
VPS13D-212ENST00000543766 MROH2BQ7Z745 1585 aa12.2□□□□□ -0.46
VPS13D-212ENST00000543766 SUPT16HQ9Y5B9 1047 aaKnown RBP12.2□□□□□ -0.46
VPS13D-212ENST00000543766 OS9Q13438 667 aaPredicted RBP12.19□□□□□ -0.46
VPS13D-212ENST00000543766 CWC22Q9HCG8 908 aaKnown RBP12.19□□□□□ -0.46
VPS13D-212ENST00000543766 IPO4Q8TEX9 1081 aaKnown RBP12.18□□□□□ -0.46
VPS13D-212ENST00000543766 ZNF428Q96B54 188 aa12.18□□□□□ -0.46
VPS13D-212ENST00000543766 CECR2Q9BXF3 1484 aa12.18□□□□□ -0.46
VPS13D-212ENST00000543766 ZNF316A6NFI3 1004 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-212ENST00000543766 HMGB1P09429 215 aaKnown RBP12.18□□□□□ -0.46
VPS13D-212ENST00000543766 CCER1Q8TC90 406 aaPredicted RBP12.18□□□□□ -0.46
VPS13D-212ENST00000543766 PSMD1Q99460 953 aa12.17□□□□□ -0.46
VPS13D-212ENST00000543766 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.17□□□□□ -0.46
VPS13D-212ENST00000543766 PTMSP20962 102 aa12.16□□□□□ -0.46
VPS13D-212ENST00000543766 FTSJ3Q8IY81 847 aaKnown RBP12.16□□□□□ -0.46
VPS13D-212ENST00000543766 WIZO95785 1651 aa12.15□□□□□ -0.46
VPS13D-212ENST00000543766 HSP90AA2PQ14568 343 aaPredicted RBP12.15□□□□□ -0.46
VPS13D-212ENST00000543766 MAPK8IP2Q13387 824 aaPredicted RBP12.13□□□□□ -0.47
VPS13D-212ENST00000543766 MIER1Q8N108 512 aa12.13□□□□□ -0.47
VPS13D-212ENST00000543766 TICAM2Q86XR7 235 aa12.13□□□□□ -0.47
VPS13D-212ENST00000543766 PLCD4Q9BRC7 762 aa12.13□□□□□ -0.47
VPS13D-212ENST00000543766 KDM2AQ9Y2K7 1162 aa12.13□□□□□ -0.47
VPS13D-212ENST00000543766 APPP05067 770 aa12.12□□□□□ -0.47
VPS13D-212ENST00000543766 CUX2O14529 1486 aa12.11□□□□□ -0.47
VPS13D-212ENST00000543766 FAM43BQ6ZT52 329 aaPredicted RBP12.1□□□□□ -0.47
VPS13D-212ENST00000543766 TOP2AP11388 1531 aaKnown RBP12.09□□□□□ -0.47
VPS13D-212ENST00000543766 RBM19Q9Y4C8 960 aaKnown RBP12.09□□□□□ -0.47
VPS13D-212ENST00000543766 TEX2Q8IWB9 1127 aa12.08□□□□□ -0.48
VPS13D-212ENST00000543766 KCNG1Q9UIX4 513 aa12.08□□□□□ -0.48
VPS13D-212ENST00000543766 FAM193AP78312 1265 aa12.08□□□□□ -0.48
VPS13D-212ENST00000543766 SOX12O15370 315 aa12.07□□□□□ -0.48
VPS13D-212ENST00000543766 PPM1GO15355 546 aaPredicted RBP12.07□□□□□ -0.48
VPS13D-212ENST00000543766 RGS3P49796 1198 aa12.07□□□□□ -0.48
VPS13D-212ENST00000543766 LAMC3Q9Y6N6 1575 aa12.06□□□□□ -0.48
VPS13D-212ENST00000543766 FAM9BQ8IZU0 186 aa12.06□□□□□ -0.48
VPS13D-212ENST00000543766 SLC4A1APQ9BWU0 796 aaKnown RBP12.05□□□□□ -0.48
VPS13D-212ENST00000543766 FOXD1Q16676 465 aa12.05□□□□□ -0.48
VPS13D-212ENST00000543766 ATAD2BQ9ULI0 1458 aa12.05□□□□□ -0.48
VPS13D-212ENST00000543766 CLSTN1O94985 981 aa12.03□□□□□ -0.48
VPS13D-212ENST00000543766 GTF2E1P29083 439 aaPredicted RBP12.03□□□□□ -0.48
VPS13D-212ENST00000543766 CERS3Q8IU89 383 aa12.03□□□□□ -0.48
VPS13D-212ENST00000543766 VGLL3A8MV65 326 aa12.03□□□□□ -0.48
VPS13D-212ENST00000543766 WRNQ14191 1432 aaPredicted RBP eCLIP12.01□□□□□ -0.49
VPS13D-212ENST00000543766 KIF21AQ7Z4S6 1674 aa11.99□□□□□ -0.49
VPS13D-212ENST00000543766 PTMAP06454 111 aaKnown RBP11.99□□□□□ -0.49
VPS13D-212ENST00000543766 FAM50AQ14320 339 aaKnown RBP11.98□□□□□ -0.49
VPS13D-212ENST00000543766 MSH5O43196 834 aa11.96□□□□□ -0.49
VPS13D-212ENST00000543766 RBM25P49756 843 aaKnown RBP11.96□□□□□ -0.5
VPS13D-212ENST00000543766 STAC3Q96MF2 364 aa11.96□□□□□ -0.5
VPS13D-212ENST00000543766 WDR62O43379 1518 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms