RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 ABCC9O60706 1549 aa11.14□□□□□ -0.63
CPSF7-220ENST00000541963 CHGAP10645 457 aaKnown RBP11.1□□□□□ -0.63
CPSF7-220ENST00000541963 MNX1P50219 401 aaPredicted RBP11.08□□□□□ -0.64
CPSF7-220ENST00000541963 PAXIP1Q6ZW49 1069 aaPredicted RBP11.06□□□□□ -0.64
CPSF7-220ENST00000541963 CFAP44Q96MT7 982 aa11.06□□□□□ -0.64
CPSF7-220ENST00000541963 SPRYD3Q8NCJ5 442 aa11.03□□□□□ -0.64
CPSF7-220ENST00000541963 RIOK3O14730 519 aaKnown RBP11.02□□□□□ -0.65
CPSF7-220ENST00000541963 RASEFQ8IZ41 740 aa11.02□□□□□ -0.65
CPSF7-220ENST00000541963 CHRM1P11229 460 aaPredicted RBP11□□□□□ -0.65
CPSF7-220ENST00000541963 CHADLQ6NUI6 762 aa10.99□□□□□ -0.65
CPSF7-220ENST00000541963 HS6ST3Q8IZP7 471 aa10.98□□□□□ -0.65
CPSF7-220ENST00000541963 VSIG10Q8N0Z9 540 aa10.98□□□□□ -0.65
CPSF7-220ENST00000541963 FARP1Q9Y4F1 1045 aaPredicted RBP10.97□□□□□ -0.65
CPSF7-220ENST00000541963 VGFO15240 615 aaPredicted RBP10.96□□□□□ -0.65
CPSF7-220ENST00000541963 PRKAR2AP13861 404 aaKnown RBP10.96□□□□□ -0.65
CPSF7-220ENST00000541963 RNF25Q96BH1 459 aaPredicted RBP10.95□□□□□ -0.66
CPSF7-220ENST00000541963 PYGBP11216 843 aa10.94□□□□□ -0.66
CPSF7-220ENST00000541963 TSPYL2Q9H2G4 693 aaPredicted RBP10.93□□□□□ -0.66
CPSF7-220ENST00000541963 STK25O00506 426 aa10.91□□□□□ -0.66
CPSF7-220ENST00000541963 PAK3O75914 559 aaPredicted RBP10.9□□□□□ -0.66
CPSF7-220ENST00000541963 FXR2P51116 673 aaKnown RBP eCLIP10.89□□□□□ -0.67
CPSF7-220ENST00000541963 CHRDL2Q6WN34 429 aa10.88□□□□□ -0.67
CPSF7-220ENST00000541963 DNAJC5Q9H3Z4 198 aa10.87□□□□□ -0.67
CPSF7-220ENST00000541963 ZNF467Q7Z7K2 595 aaPredicted RBP10.86□□□□□ -0.67
CPSF7-220ENST00000541963 SGIP1Q9BQI5 828 aa10.86□□□□□ -0.67
CPSF7-220ENST00000541963 STK24Q9Y6E0 443 aa10.84□□□□□ -0.67
CPSF7-220ENST00000541963 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.83□□□□□ -0.68
CPSF7-220ENST00000541963 ZFP91Q96JP5 570 aaPredicted RBP10.83□□□□□ -0.68
CPSF7-220ENST00000541963 BCL11BQ9C0K0 894 aaPredicted RBP10.83□□□□□ -0.68
CPSF7-220ENST00000541963 RYDENQ9NUL5 291 aaKnown RBP10.83□□□□□ -0.68
CPSF7-220ENST00000541963 TSHZ2Q9NRE2 1034 aa10.81□□□□□ -0.68
CPSF7-220ENST00000541963 PIP4P2Q8N4L2 257 aa10.8□□□□□ -0.68
CPSF7-220ENST00000541963 BCANQ96GW7 911 aa10.8□□□□□ -0.68
CPSF7-220ENST00000541963 PDAP1Q13442 181 aaKnown RBP10.76□□□□□ -0.69
CPSF7-220ENST00000541963 KDM2AQ9Y2K7 1162 aa10.76□□□□□ -0.69
CPSF7-220ENST00000541963 CCDC61Q9Y6R9 512 aa10.76□□□□□ -0.69
CPSF7-220ENST00000541963 NKX1-1Q15270 411 aaPredicted RBP10.74□□□□□ -0.69
CPSF7-220ENST00000541963 ZNF579Q8NAF0 562 aaKnown RBP10.74□□□□□ -0.69
CPSF7-220ENST00000541963 GTPBP6O43824 516 aaPredicted RBP10.73□□□□□ -0.69
CPSF7-220ENST00000541963 PCDHB8Q9UN66 801 aa10.73□□□□□ -0.69
CPSF7-220ENST00000541963 PCDHB13Q9Y5F0 798 aa10.73□□□□□ -0.69
CPSF7-220ENST00000541963 RB1CC1Q8TDY2 1594 aa10.72□□□□□ -0.69
CPSF7-220ENST00000541963 NACADO15069 1562 aa10.69□□□□□ -0.7
CPSF7-220ENST00000541963 PSEN1P49768 467 aa10.69□□□□□ -0.7
CPSF7-220ENST00000541963 ZRANB1Q9UGI0 708 aa10.69□□□□□ -0.7
CPSF7-220ENST00000541963 CD44P16070 742 aaKnown RBP10.67□□□□□ -0.7
CPSF7-220ENST00000541963 MAP3K13O43283 966 aa10.65□□□□□ -0.7
CPSF7-220ENST00000541963 KIF12Q96FN5 646 aa10.65□□□□□ -0.7
CPSF7-220ENST00000541963 IFNL1Q8IU54 200 aa10.63□□□□□ -0.71
CPSF7-220ENST00000541963 MYO15BQ96JP2 1530 aa10.6□□□□□ -0.71
CPSF7-220ENST00000541963 NBR1Q14596 966 aa10.57□□□□□ -0.72
CPSF7-220ENST00000541963 GOLGA2Q08379 1002 aa10.56□□□□□ -0.72
CPSF7-220ENST00000541963 PHF12Q96QT6 1004 aa10.56□□□□□ -0.72
CPSF7-220ENST00000541963 CABP2Q9NPB3 220 aa10.56□□□□□ -0.72
CPSF7-220ENST00000541963 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
CPSF7-220ENST00000541963 SOX12O15370 315 aa10.55□□□□□ -0.72
CPSF7-220ENST00000541963 NLRP6P59044 892 aa10.54□□□□□ -0.72
CPSF7-220ENST00000541963 WDR70Q9NW82 654 aa10.53□□□□□ -0.72
CPSF7-220ENST00000541963 DCAF1Q9Y4B6 1507 aa10.53□□□□□ -0.72
CPSF7-220ENST00000541963 EFCAB3Q8N7B9 438 aa10.52□□□□□ -0.73
CPSF7-220ENST00000541963 C19orf67A6NJJ6 358 aa10.51□□□□□ -0.73
CPSF7-220ENST00000541963 MFRPQ9BY79 579 aa10.51□□□□□ -0.73
CPSF7-220ENST00000541963 TMEM106CQ9BVX2 250 aa10.48□□□□□ -0.73
CPSF7-220ENST00000541963 MKRN3Q13064 507 aaKnown RBP10.45□□□□□ -0.74
CPSF7-220ENST00000541963 P3H3Q8IVL6 736 aa10.45□□□□□ -0.74
CPSF7-220ENST00000541963 PHF8Q9UPP1 1060 aa10.45□□□□□ -0.74
CPSF7-220ENST00000541963 MS4A3Q96HJ5 214 aa10.44□□□□□ -0.74
CPSF7-220ENST00000541963 HAX1O00165 279 aa10.43□□□□□ -0.74
CPSF7-220ENST00000541963 CLCN6P51797 869 aa10.42□□□□□ -0.74
CPSF7-220ENST00000541963 FBXO22Q8NEZ5 403 aa10.42□□□□□ -0.74
CPSF7-220ENST00000541963 UNC13AQ9UPW8 1703 aa10.4□□□□□ -0.74
CPSF7-220ENST00000541963 TIE1P35590 1138 aa10.39□□□□□ -0.75
CPSF7-220ENST00000541963 TPRNQ4KMQ1 711 aa10.39□□□□□ -0.75
CPSF7-220ENST00000541963 PPP1R37O75864 691 aa10.38□□□□□ -0.75
CPSF7-220ENST00000541963 CADPS2Q86UW7 1296 aa10.38□□□□□ -0.75
CPSF7-220ENST00000541963 PRKCSHP14314 528 aaPredicted RBP10.36□□□□□ -0.75
CPSF7-220ENST00000541963 TRPC6Q9Y210 931 aa10.34□□□□□ -0.75
CPSF7-220ENST00000541963 TTLL13PA6NNM8 815 aa10.33□□□□□ -0.76
CPSF7-220ENST00000541963 BICRAQ9NZM4 1560 aa10.32□□□□□ -0.76
CPSF7-220ENST00000541963 PDE4AP27815 886 aa10.32□□□□□ -0.76
CPSF7-220ENST00000541963 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.32□□□□□ -0.764e-9■■■□□ 15.2
CPSF7-220ENST00000541963 SCRIBQ14160 1630 aa10.31□□□□□ -0.76
CPSF7-220ENST00000541963 BMP2KQ9NSY1 1161 aaPredicted RBP10.3□□□□□ -0.76
CPSF7-220ENST00000541963 GALR2O43603 387 aaPredicted RBP10.29□□□□□ -0.76
CPSF7-220ENST00000541963 MS4A4AQ96JQ5 239 aa10.29□□□□□ -0.76
CPSF7-220ENST00000541963 E2F4Q16254 413 aa10.28□□□□□ -0.76
CPSF7-220ENST00000541963 TRIM35Q9UPQ4 493 aa10.28□□□□□ -0.76
CPSF7-220ENST00000541963 SHROOM4Q9ULL8 1493 aa10.28□□□□□ -0.76
CPSF7-220ENST00000541963 TULP1O00294 542 aaPredicted RBP10.27□□□□□ -0.77
CPSF7-220ENST00000541963 LARP6Q9BRS8 491 aaKnown RBP10.27□□□□□ -0.77
CPSF7-220ENST00000541963 KCNV2Q8TDN2 545 aa10.26□□□□□ -0.77
CPSF7-220ENST00000541963 ARHGEF1Q92888 912 aaKnown RBP10.25□□□□□ -0.77
CPSF7-220ENST00000541963 G3V3G9 751 aa10.23□□□□□ -0.77
CPSF7-220ENST00000541963 DDX27Q96GQ7 796 aaKnown RBP10.22□□□□□ -0.77
CPSF7-220ENST00000541963 EVX2Q03828 476 aa10.21□□□□□ -0.77
CPSF7-220ENST00000541963 NCKAP5LQ9HCH0 1330 aa10.2□□□□□ -0.78
CPSF7-220ENST00000541963 ILDR1Q86SU0 546 aaPredicted RBP10.19□□□□□ -0.78
CPSF7-220ENST00000541963 CRISPLD2Q9H0B8 497 aa10.19□□□□□ -0.78
CPSF7-220ENST00000541963 ATN1P54259 1190 aaPredicted RBP10.18□□□□□ -0.78
CPSF7-220ENST00000541963 MFSD10Q14728 455 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms