RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CARMIL1Q5VZK9 1371 aa19.12■□□□□ 0.65
USP3-204ENST00000540797 PDS5BQ9NTI5 1447 aa19.11■□□□□ 0.65
USP3-204ENST00000540797 SMARCA2P51531 1590 aa19.11■□□□□ 0.65
USP3-204ENST00000540797 RGL3Q3MIN7 710 aa19.1■□□□□ 0.65
USP3-204ENST00000540797 C14orf37Q86TY3 774 aa19.09■□□□□ 0.65
USP3-204ENST00000540797 TMC1Q8TDI8 760 aa19.09■□□□□ 0.65
USP3-204ENST00000540797 EIF4G1Q04637 1599 aaKnown RBP19.09■□□□□ 0.65
USP3-204ENST00000540797 ACIN1Q9UKV3 1341 aaKnown RBP19.09■□□□□ 0.65
USP3-204ENST00000540797 MROH2BQ7Z745 1585 aa19.08■□□□□ 0.64
USP3-204ENST00000540797 SALL2Q9Y467 1007 aaPredicted RBP19.07■□□□□ 0.64
USP3-204ENST00000540797 HNRNPUQ00839 825 aaKnown RBP eCLIP19.07■□□□□ 0.64
USP3-204ENST00000540797 TRHP20396 242 aaPredicted RBP19.05■□□□□ 0.64
USP3-204ENST00000540797 WDR43Q15061 677 aaKnown RBP eCLIP19.05■□□□□ 0.64
USP3-204ENST00000540797 MYO15BQ96JP2 1530 aa19.04■□□□□ 0.64
USP3-204ENST00000540797 CCDC88BA6NC98 1476 aa19.04■□□□□ 0.64
USP3-204ENST00000540797 MYT1Q01538 1121 aa19.04■□□□□ 0.64
USP3-204ENST00000540797 EIF4G2P78344 907 aaKnown RBP eCLIP19.03■□□□□ 0.64
USP3-204ENST00000540797 PLEKHG5O94827 1062 aa19.02■□□□□ 0.63
USP3-204ENST00000540797 CCNB3Q8WWL7 1395 aa19■□□□□ 0.63
USP3-204ENST00000540797 ZBTB7CA1YPR0 619 aa19■□□□□ 0.63
USP3-204ENST00000540797 HIRIP3Q9BW71 556 aaPredicted RBP19■□□□□ 0.63
USP3-204ENST00000540797 FHAD1B1AJZ9 1412 aa18.99■□□□□ 0.63
USP3-204ENST00000540797 SOGA1O94964 1423 aa18.97■□□□□ 0.63
USP3-204ENST00000540797 MRS2Q9HD23 443 aa18.97■□□□□ 0.63
USP3-204ENST00000540797 A0A0G2JS52 829 aa18.96■□□□□ 0.63
USP3-204ENST00000540797 TDRD9Q8NDG6 1382 aaKnown RBP18.94■□□□□ 0.62
USP3-204ENST00000540797 CARMIL2Q6F5E8 1435 aa18.91■□□□□ 0.62
USP3-204ENST00000540797 HAP1P54257 671 aaPredicted RBP18.89■□□□□ 0.61
USP3-204ENST00000540797 CADPSQ9ULU8 1353 aa18.88■□□□□ 0.61
USP3-204ENST00000540797 CDCA8Q53HL2 280 aa18.88■□□□□ 0.61
USP3-204ENST00000540797 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.87■□□□□ 0.61
USP3-204ENST00000540797 MLECQ14165 292 aa18.87■□□□□ 0.61
USP3-204ENST00000540797 CARD11Q9BXL7 1154 aa18.86■□□□□ 0.61
USP3-204ENST00000540797 FKBP8Q14318 412 aa18.86■□□□□ 0.61
USP3-204ENST00000540797 ABCC8Q09428 1581 aa18.86■□□□□ 0.61
USP3-204ENST00000540797 NPM2Q86SE8 214 aaKnown RBP18.85■□□□□ 0.61
USP3-204ENST00000540797 POGKQ9P215 609 aa18.84■□□□□ 0.61
USP3-204ENST00000540797 KANK1Q14678 1352 aa18.83■□□□□ 0.6
USP3-204ENST00000540797 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
USP3-204ENST00000540797 ANP32AP39687 249 aaKnown RBP18.82■□□□□ 0.6
USP3-204ENST00000540797 KNSTRNQ9Y448 316 aa18.8■□□□□ 0.6
USP3-204ENST00000540797 CFAP53Q96M91 514 aa18.79■□□□□ 0.6
USP3-204ENST00000540797 WIZO95785 1651 aa18.78■□□□□ 0.6
USP3-204ENST00000540797 ATAD2BQ9ULI0 1458 aa18.78■□□□□ 0.6
USP3-204ENST00000540797 PPM1GO15355 546 aaPredicted RBP18.77■□□□□ 0.59
USP3-204ENST00000540797 LMOD2Q6P5Q4 547 aa18.76■□□□□ 0.59
USP3-204ENST00000540797 SIN3AQ96ST3 1273 aa18.75■□□□□ 0.59
USP3-204ENST00000540797 GGT6Q6P531 493 aa18.75■□□□□ 0.59
USP3-204ENST00000540797 UPF2Q9HAU5 1272 aaKnown RBP18.75■□□□□ 0.59
USP3-204ENST00000540797 HDGFP51858 240 aaKnown RBP18.74■□□□□ 0.59
USP3-204ENST00000540797 HSP90AA1P07900 732 aaKnown RBP18.72■□□□□ 0.59
USP3-204ENST00000540797 CCDC136Q96JN2 1154 aa18.72■□□□□ 0.59
USP3-204ENST00000540797 EFCAB2Q5VUJ9 269 aa18.71■□□□□ 0.59
USP3-204ENST00000540797 MIER1Q8N108 512 aa18.71■□□□□ 0.59
USP3-204ENST00000540797 ARHGAP35Q9NRY4 1499 aa18.7■□□□□ 0.58
USP3-204ENST00000540797 FMN1Q68DA7 1419 aa18.7■□□□□ 0.58
USP3-204ENST00000540797 DCAF11Q8TEB1 546 aa18.7■□□□□ 0.58
USP3-204ENST00000540797 VPS8Q8N3P4 1428 aa18.69■□□□□ 0.58
USP3-204ENST00000540797 MYH16Q9H6N6 1097 aa18.69■□□□□ 0.58
USP3-204ENST00000540797 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
USP3-204ENST00000540797 KANK4Q5T7N3 995 aaPredicted RBP18.64■□□□□ 0.57
USP3-204ENST00000540797 JPH4Q96JJ6 628 aa18.64■□□□□ 0.57
USP3-204ENST00000540797 RAPGEF2Q9Y4G8 1499 aa18.63■□□□□ 0.57
USP3-204ENST00000540797 FANCD2Q9BXW9 1451 aa18.62■□□□□ 0.57
USP3-204ENST00000540797 NUDCQ9Y266 331 aa18.62■□□□□ 0.57
USP3-204ENST00000540797 PKD2Q13563 968 aa18.6■□□□□ 0.57
USP3-204ENST00000540797 ARXQ96QS3 562 aa18.6■□□□□ 0.57
USP3-204ENST00000540797 TNNT2P45379 298 aaPredicted RBP18.6■□□□□ 0.57
USP3-204ENST00000540797 MAPK8IP3Q9UPT6 1336 aa18.6■□□□□ 0.57
USP3-204ENST00000540797 TMF1P82094 1093 aa18.59■□□□□ 0.57
USP3-204ENST00000540797 SETD5Q9C0A6 1442 aa18.58■□□□□ 0.56
USP3-204ENST00000540797 SRPK2P78362 688 aaKnown RBP18.57■□□□□ 0.56
USP3-204ENST00000540797 SENP3-EIF4A1A0A087X0R7 540 aa18.57■□□□□ 0.56
USP3-204ENST00000540797 NEUROD2Q15784 382 aa18.57■□□□□ 0.56
USP3-204ENST00000540797 IRX6P78412 446 aaPredicted RBP18.56■□□□□ 0.56
USP3-204ENST00000540797 SAFB2Q14151 953 aaKnown RBP eCLIP18.56■□□□□ 0.56
USP3-204ENST00000540797 FHOD3Q2V2M9 1422 aa18.55■□□□□ 0.56
USP3-204ENST00000540797 CC2D1BQ5T0F9 858 aaKnown RBP18.55■□□□□ 0.56
USP3-204ENST00000540797 ANKRD30AQ9BXX3 1397 aa18.54■□□□□ 0.56
USP3-204ENST00000540797 LAS1LQ9Y4W2 734 aaKnown RBP18.54■□□□□ 0.56
USP3-204ENST00000540797 KIF3BO15066 747 aa18.53■□□□□ 0.56
USP3-204ENST00000540797 STK26Q9P289 416 aa18.53■□□□□ 0.56
USP3-204ENST00000540797 HNRNPMP52272 730 aaKnown RBP eCLIP18.53■□□□□ 0.568e-7■■■■■ 27.1
USP3-204ENST00000540797 NUP155O75694 1391 aa18.52■□□□□ 0.56
USP3-204ENST00000540797 FOXD1Q16676 465 aa18.52■□□□□ 0.55
USP3-204ENST00000540797 U2SURPO15042 1029 aaKnown RBP18.51■□□□□ 0.55
USP3-204ENST00000540797 TIMELESSQ9UNS1 1208 aa18.5■□□□□ 0.55
USP3-204ENST00000540797 SPAG9O60271 1321 aaKnown RBP18.5■□□□□ 0.55
USP3-204ENST00000540797 OSCARQ8IYS5 282 aa18.49■□□□□ 0.55
USP3-204ENST00000540797 SOX12O15370 315 aa18.49■□□□□ 0.55
USP3-204ENST00000540797 RSPH4AQ5TD94 716 aa18.47■□□□□ 0.55
USP3-204ENST00000540797 CYB5RLQ6IPT4 315 aa18.47■□□□□ 0.55
USP3-204ENST00000540797 MPHOSPH9Q99550 1183 aa18.46■□□□□ 0.55
USP3-204ENST00000540797 CCDC18Q5T9S5 1454 aa18.46■□□□□ 0.55
USP3-204ENST00000540797 FTSJ3Q8IY81 847 aaKnown RBP18.45■□□□□ 0.54
USP3-204ENST00000540797 PNNQ9H307 717 aaKnown RBP18.45■□□□□ 0.54
USP3-204ENST00000540797 PTPRGP23470 1445 aa18.44■□□□□ 0.54
USP3-204ENST00000540797 WASHC2CQ9Y4E1 1318 aa18.43■□□□□ 0.54
USP3-204ENST00000540797 MORC1Q86VD1 984 aa18.43■□□□□ 0.54
USP3-204ENST00000540797 ANP32BQ92688 251 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms