RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 KIF27Q86VH2 1401 aa12.77□□□□□ -0.36
PTPRB-204ENST00000538708 ARXQ96QS3 562 aa12.76□□□□□ -0.37
PTPRB-204ENST00000538708 WRNQ14191 1432 aaPredicted RBP eCLIP12.76□□□□□ -0.37
PTPRB-204ENST00000538708 RGL3Q3MIN7 710 aa12.75□□□□□ -0.37
PTPRB-204ENST00000538708 FAM9BQ8IZU0 186 aa12.74□□□□□ -0.37
PTPRB-204ENST00000538708 GOLGA3Q08378 1498 aa12.72□□□□□ -0.37
PTPRB-204ENST00000538708 POGKQ9P215 609 aa12.7□□□□□ -0.38
PTPRB-204ENST00000538708 NPHP1O15259 732 aa12.7□□□□□ -0.38
PTPRB-204ENST00000538708 BAZ1AQ9NRL2 1556 aaPredicted RBP12.69□□□□□ -0.38
PTPRB-204ENST00000538708 PPM1GO15355 546 aaPredicted RBP12.68□□□□□ -0.38
PTPRB-204ENST00000538708 HSP90AA1P07900 732 aaKnown RBP12.67□□□□□ -0.38
PTPRB-204ENST00000538708 PDS5BQ9NTI5 1447 aa12.67□□□□□ -0.38
PTPRB-204ENST00000538708 KANK1Q14678 1352 aa12.67□□□□□ -0.38
PTPRB-204ENST00000538708 DDX10Q13206 875 aaKnown RBP12.66□□□□□ -0.38
PTPRB-204ENST00000538708 HDGFP51858 240 aaKnown RBP12.66□□□□□ -0.38
PTPRB-204ENST00000538708 MYH16Q9H6N6 1097 aa12.65□□□□□ -0.38
PTPRB-204ENST00000538708 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.65□□□□□ -0.38
PTPRB-204ENST00000538708 DCAF1Q9Y4B6 1507 aa12.64□□□□□ -0.39
PTPRB-204ENST00000538708 EEA1Q15075 1411 aa12.64□□□□□ -0.39
PTPRB-204ENST00000538708 CCNB3Q8WWL7 1395 aa12.64□□□□□ -0.39
PTPRB-204ENST00000538708 HNRNPUQ00839 825 aaKnown RBP eCLIP12.64□□□□□ -0.39
PTPRB-204ENST00000538708 CECR2Q9BXF3 1484 aa12.63□□□□□ -0.39
PTPRB-204ENST00000538708 CUX2O14529 1486 aa12.62□□□□□ -0.39
PTPRB-204ENST00000538708 UPF2Q9HAU5 1272 aaKnown RBP12.62□□□□□ -0.39
PTPRB-204ENST00000538708 CFAP53Q96M91 514 aa12.62□□□□□ -0.39
PTPRB-204ENST00000538708 ACIN1Q9UKV3 1341 aaKnown RBP12.61□□□□□ -0.39
PTPRB-204ENST00000538708 CDCA8Q53HL2 280 aa12.6□□□□□ -0.39
PTPRB-204ENST00000538708 AEBP2Q6ZN18 517 aaPredicted RBP12.59□□□□□ -0.39
PTPRB-204ENST00000538708 CARMIL2Q6F5E8 1435 aa12.59□□□□□ -0.39
PTPRB-204ENST00000538708 ANP32AP39687 249 aaKnown RBP12.59□□□□□ -0.39
PTPRB-204ENST00000538708 EIF4G2P78344 907 aaKnown RBP eCLIP12.58□□□□□ -0.4
PTPRB-204ENST00000538708 CEP164Q9UPV0 1460 aa12.58□□□□□ -0.4
PTPRB-204ENST00000538708 SMARCA2P51531 1590 aa12.58□□□□□ -0.4
PTPRB-204ENST00000538708 MRS2Q9HD23 443 aa12.57□□□□□ -0.4
PTPRB-204ENST00000538708 GGT6Q6P531 493 aa12.57□□□□□ -0.4
PTPRB-204ENST00000538708 CEP162Q5TB80 1403 aa12.57□□□□□ -0.4
PTPRB-204ENST00000538708 HIRIP3Q9BW71 556 aaPredicted RBP12.56□□□□□ -0.4
PTPRB-204ENST00000538708 CARMIL1Q5VZK9 1371 aa12.56□□□□□ -0.4
PTPRB-204ENST00000538708 KNSTRNQ9Y448 316 aa12.56□□□□□ -0.4
PTPRB-204ENST00000538708 CARD11Q9BXL7 1154 aa12.55□□□□□ -0.4
PTPRB-204ENST00000538708 GTF3C3Q9Y5Q9 886 aa12.54□□□□□ -0.4
PTPRB-204ENST00000538708 LAS1LQ9Y4W2 734 aaKnown RBP12.54□□□□□ -0.4
PTPRB-204ENST00000538708 SOGA1O94964 1423 aa12.53□□□□□ -0.4
PTPRB-204ENST00000538708 SOX12O15370 315 aa12.52□□□□□ -0.41
PTPRB-204ENST00000538708 MAPK8IP3Q9UPT6 1336 aa12.52□□□□□ -0.41
PTPRB-204ENST00000538708 TNNT2P45379 298 aaPredicted RBP12.5□□□□□ -0.41
PTPRB-204ENST00000538708 CCDC9Q9Y3X0 531 aaKnown RBP12.5□□□□□ -0.41
PTPRB-204ENST00000538708 FHAD1B1AJZ9 1412 aa12.49□□□□□ -0.41
PTPRB-204ENST00000538708 NUDCQ9Y266 331 aa12.49□□□□□ -0.41
PTPRB-204ENST00000538708 SRPK2P78362 688 aaKnown RBP12.49□□□□□ -0.41
PTPRB-204ENST00000538708 SAFB2Q14151 953 aaKnown RBP eCLIP12.49□□□□□ -0.41
PTPRB-204ENST00000538708 ANP32BQ92688 251 aaKnown RBP12.48□□□□□ -0.41
PTPRB-204ENST00000538708 FKBP8Q14318 412 aa12.48□□□□□ -0.41
PTPRB-204ENST00000538708 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
PTPRB-204ENST00000538708 TDRD9Q8NDG6 1382 aaKnown RBP12.47□□□□□ -0.41
PTPRB-204ENST00000538708 CDK11BP21127 795 aaKnown RBP12.47□□□□□ -0.41
PTPRB-204ENST00000538708 STK26Q9P289 416 aa12.47□□□□□ -0.41
PTPRB-204ENST00000538708 CSB-PGBD3P0DP91 1061 aa12.44□□□□□ -0.42
PTPRB-204ENST00000538708 NEUROD2Q15784 382 aa12.44□□□□□ -0.42
PTPRB-204ENST00000538708 CCDC136Q96JN2 1154 aa12.44□□□□□ -0.42
PTPRB-204ENST00000538708 U2SURPO15042 1029 aaKnown RBP12.43□□□□□ -0.42
PTPRB-204ENST00000538708 TNIKQ9UKE5 1360 aa12.43□□□□□ -0.42
PTPRB-204ENST00000538708 GOLGA2Q08379 1002 aa12.43□□□□□ -0.42
PTPRB-204ENST00000538708 EID1Q9Y6B2 187 aa12.43□□□□□ -0.42
PTPRB-204ENST00000538708 TULP1O00294 542 aaPredicted RBP12.42□□□□□ -0.42
PTPRB-204ENST00000538708 EFCAB2Q5VUJ9 269 aa12.42□□□□□ -0.42
PTPRB-204ENST00000538708 DCAF11Q8TEB1 546 aa12.42□□□□□ -0.42
PTPRB-204ENST00000538708 CYB5RLQ6IPT4 315 aa12.42□□□□□ -0.42
PTPRB-204ENST00000538708 CCDC88BA6NC98 1476 aa12.41□□□□□ -0.42
PTPRB-204ENST00000538708 CC2D1BQ5T0F9 858 aaKnown RBP12.41□□□□□ -0.42
PTPRB-204ENST00000538708 FTSJ3Q8IY81 847 aaKnown RBP12.41□□□□□ -0.42
PTPRB-204ENST00000538708 PNNQ9H307 717 aaKnown RBP12.41□□□□□ -0.42
PTPRB-204ENST00000538708 OS9Q13438 667 aaPredicted RBP12.39□□□□□ -0.43
PTPRB-204ENST00000538708 TMF1P82094 1093 aa12.38□□□□□ -0.43
PTPRB-204ENST00000538708 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
PTPRB-204ENST00000538708 SENP3-EIF4A1A0A087X0R7 540 aa12.38□□□□□ -0.43
PTPRB-204ENST00000538708 CASC1Q6TDU7 716 aa12.38□□□□□ -0.43
PTPRB-204ENST00000538708 HDGFL2Q7Z4V5 671 aaPredicted RBP12.37□□□□□ -0.43
PTPRB-204ENST00000538708 ARHGAP35Q9NRY4 1499 aa12.37□□□□□ -0.43
PTPRB-204ENST00000538708 MROH2BQ7Z745 1585 aa12.37□□□□□ -0.43
PTPRB-204ENST00000538708 CADPSQ9ULU8 1353 aa12.35□□□□□ -0.43
PTPRB-204ENST00000538708 ABCC8Q09428 1581 aa12.35□□□□□ -0.43
PTPRB-204ENST00000538708 KIF3BO15066 747 aa12.34□□□□□ -0.43
PTPRB-204ENST00000538708 TMX4Q9H1E5 349 aaPredicted RBP12.34□□□□□ -0.43
PTPRB-204ENST00000538708 RTF1Q92541 710 aaKnown RBP12.34□□□□□ -0.43
PTPRB-204ENST00000538708 TAOK2Q9UL54 1235 aa12.34□□□□□ -0.43
PTPRB-204ENST00000538708 WASHC2CQ9Y4E1 1318 aa12.33□□□□□ -0.44
PTPRB-204ENST00000538708 ZNF330Q9Y3S2 320 aaPredicted RBP12.33□□□□□ -0.44
PTPRB-204ENST00000538708 IRX6P78412 446 aaPredicted RBP12.33□□□□□ -0.44
PTPRB-204ENST00000538708 MORC1Q86VD1 984 aa12.33□□□□□ -0.44
PTPRB-204ENST00000538708 MEX3CQ5U5Q3 659 aaKnown RBP12.33□□□□□ -0.44
PTPRB-204ENST00000538708 NUTM2DQ5VT03 806 aaPredicted RBP12.32□□□□□ -0.44
PTPRB-204ENST00000538708 HNRNPMP52272 730 aaKnown RBP eCLIP12.31□□□□□ -0.44
PTPRB-204ENST00000538708 SIN3AQ96ST3 1273 aa12.31□□□□□ -0.44
PTPRB-204ENST00000538708 SPAG9O60271 1321 aaKnown RBP12.31□□□□□ -0.44
PTPRB-204ENST00000538708 PKD2Q13563 968 aa12.3□□□□□ -0.44
PTPRB-204ENST00000538708 TOP2AP11388 1531 aaKnown RBP12.3□□□□□ -0.44
PTPRB-204ENST00000538708 FMN1Q68DA7 1419 aa12.3□□□□□ -0.44
PTPRB-204ENST00000538708 JPH4Q96JJ6 628 aa12.29□□□□□ -0.44
PTPRB-204ENST00000538708 NCLP19338 710 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms