RNA–Protein interactions for RNA: ENST00000535302.6

SPG11-203, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 7,288 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-203ENST00000535302 CCDC136Q96JN2 1154 aa16.89■□□□□ 0.3
SPG11-203ENST00000535302 MRS2Q9HD23 443 aa16.89■□□□□ 0.29
SPG11-203ENST00000535302 GLIPR1L2Q4G1C9 344 aa16.86■□□□□ 0.29
SPG11-203ENST00000535302 NCLP19338 710 aaKnown RBP16.85■□□□□ 0.29
SPG11-203ENST00000535302 CHMP7Q8WUX9 453 aaPredicted RBP16.85■□□□□ 0.29
SPG11-203ENST00000535302 AMER1Q5JTC6 1135 aaPredicted RBP16.84■□□□□ 0.29
SPG11-203ENST00000535302 TSPY4P0CV99 314 aa16.82■□□□□ 0.28
SPG11-203ENST00000535302 TSPY10P0CW01 314 aa16.82■□□□□ 0.28
SPG11-203ENST00000535302 MIER1Q8N108 512 aa16.82■□□□□ 0.28
SPG11-203ENST00000535302 RGL3Q3MIN7 710 aa16.82■□□□□ 0.28
SPG11-203ENST00000535302 RTN4Q9NQC3 1192 aaKnown RBP16.81■□□□□ 0.28
SPG11-203ENST00000535302 MTUS2Q5JR59 1369 aa16.8■□□□□ 0.28
SPG11-203ENST00000535302 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.78■□□□□ 0.28
SPG11-203ENST00000535302 PPP1R15AO75807 674 aaPredicted RBP16.77■□□□□ 0.27
SPG11-203ENST00000535302 PPM1GO15355 546 aaPredicted RBP16.74■□□□□ 0.27
SPG11-203ENST00000535302 MYH16Q9H6N6 1097 aa16.71■□□□□ 0.27
SPG11-203ENST00000535302 ARID4BQ4LE39 1312 aaPredicted RBP16.71■□□□□ 0.27
SPG11-203ENST00000535302 PLCB2Q00722 1185 aa16.7■□□□□ 0.26
SPG11-203ENST00000535302 HAP1P54257 671 aaPredicted RBP16.7■□□□□ 0.26
SPG11-203ENST00000535302 DNTTIP2Q5QJE6 756 aaKnown RBP16.7■□□□□ 0.26
SPG11-203ENST00000535302 LAS1LQ9Y4W2 734 aaKnown RBP16.69■□□□□ 0.26
SPG11-203ENST00000535302 TRIM44Q96DX7 344 aaPredicted RBP16.68■□□□□ 0.26
SPG11-203ENST00000535302 PTMAP06454 111 aaKnown RBP16.67■□□□□ 0.26
SPG11-203ENST00000535302 NEUROD2Q15784 382 aa16.66■□□□□ 0.26
SPG11-203ENST00000535302 EIF4G2P78344 907 aaKnown RBP eCLIP16.65■□□□□ 0.26
SPG11-203ENST00000535302 CLIP1P30622 1438 aa16.64■□□□□ 0.25
SPG11-203ENST00000535302 TNNT2P45379 298 aaPredicted RBP16.64■□□□□ 0.25
SPG11-203ENST00000535302 NPHP1O15259 732 aa16.62■□□□□ 0.25
SPG11-203ENST00000535302 LMOD2Q6P5Q4 547 aa16.61■□□□□ 0.25
SPG11-203ENST00000535302 DCAF1Q9Y4B6 1507 aa16.61■□□□□ 0.25
SPG11-203ENST00000535302 NAP1L2Q9ULW6 460 aaPredicted RBP16.61■□□□□ 0.25
SPG11-203ENST00000535302 CLSTN1O94985 981 aa16.6■□□□□ 0.25
SPG11-203ENST00000535302 ZCCHC6Q5VYS8 1495 aaKnown RBP16.6■□□□□ 0.25
SPG11-203ENST00000535302 ZRSR1Q15695 479 aaKnown RBP16.58■□□□□ 0.24
SPG11-203ENST00000535302 MYO15BQ96JP2 1530 aa16.57■□□□□ 0.24
SPG11-203ENST00000535302 PLEKHD1A6NEE1 506 aa16.57■□□□□ 0.24
SPG11-203ENST00000535302 NAP1L5Q96NT1 182 aaPredicted RBP16.56■□□□□ 0.24
SPG11-203ENST00000535302 SIN3AQ96ST3 1273 aa16.54■□□□□ 0.24
SPG11-203ENST00000535302 CC2D1BQ5T0F9 858 aaKnown RBP16.53■□□□□ 0.24
SPG11-203ENST00000535302 SPRYD3Q8NCJ5 442 aa16.53■□□□□ 0.24
SPG11-203ENST00000535302 SUPT16HQ9Y5B9 1047 aaKnown RBP16.53■□□□□ 0.24
SPG11-203ENST00000535302 CARD11Q9BXL7 1154 aa16.52■□□□□ 0.24
SPG11-203ENST00000535302 ARID3AQ99856 593 aa16.52■□□□□ 0.23
SPG11-203ENST00000535302 CFDP1Q9UEE9 299 aaPredicted RBP16.51■□□□□ 0.23
SPG11-203ENST00000535302 SOX12O15370 315 aa16.51■□□□□ 0.23
SPG11-203ENST00000535302 KNSTRNQ9Y448 316 aa16.5■□□□□ 0.23
SPG11-203ENST00000535302 ANO8Q9HCE9 1232 aaPredicted RBP16.5■□□□□ 0.23
SPG11-203ENST00000535302 FRAT1Q92837 279 aaPredicted RBP16.48■□□□□ 0.23
SPG11-203ENST00000535302 BECN1Q14457 450 aa16.48■□□□□ 0.23
SPG11-203ENST00000535302 FTSJ3Q8IY81 847 aaKnown RBP16.48■□□□□ 0.23
SPG11-203ENST00000535302 CEP162Q5TB80 1403 aa16.48■□□□□ 0.23
SPG11-203ENST00000535302 ISY1Q9ULR0 285 aaKnown RBP16.47■□□□□ 0.23
SPG11-203ENST00000535302 MLECQ14165 292 aa16.47■□□□□ 0.23
SPG11-203ENST00000535302 RGS3P49796 1198 aa16.46■□□□□ 0.23
SPG11-203ENST00000535302 ERICH6BQ5W0A0 696 aa16.46■□□□□ 0.23
SPG11-203ENST00000535302 CFAP53Q96M91 514 aa16.46■□□□□ 0.23
SPG11-203ENST00000535302 POGKQ9P215 609 aa16.45■□□□□ 0.22
SPG11-203ENST00000535302 GOLGA6L22H0YM25 854 aa16.44■□□□□ 0.22
SPG11-203ENST00000535302 SAFB2Q14151 953 aaKnown RBP eCLIP16.44■□□□□ 0.22
SPG11-203ENST00000535302 PDE4CQ08493 712 aa16.44■□□□□ 0.22
SPG11-203ENST00000535302 U2SURPO15042 1029 aaKnown RBP16.43■□□□□ 0.22
SPG11-203ENST00000535302 OS9Q13438 667 aaPredicted RBP16.41■□□□□ 0.22
SPG11-203ENST00000535302 FGD1P98174 961 aa16.41■□□□□ 0.22
SPG11-203ENST00000535302 RSF1Q96T23 1441 aaPredicted RBP16.41■□□□□ 0.22
SPG11-203ENST00000535302 GOLGA3Q08378 1498 aa16.41■□□□□ 0.22
SPG11-203ENST00000535302 MAPK8IP3Q9UPT6 1336 aa16.4■□□□□ 0.22
SPG11-203ENST00000535302 DDRGK1Q96HY6 314 aa16.38■□□□□ 0.21
SPG11-203ENST00000535302 CASC1Q6TDU7 716 aa16.38■□□□□ 0.21
SPG11-203ENST00000535302 TRHP20396 242 aaPredicted RBP16.37■□□□□ 0.21
SPG11-203ENST00000535302 KCNJ4P48050 445 aa16.36■□□□□ 0.21
SPG11-203ENST00000535302 HSP90AB1P08238 724 aaKnown RBP16.36■□□□□ 0.21
SPG11-203ENST00000535302 GOLGA2Q08379 1002 aa16.36■□□□□ 0.21
SPG11-203ENST00000535302 EIF4G1Q04637 1599 aaKnown RBP16.34■□□□□ 0.21
SPG11-203ENST00000535302 PRM3Q9NNZ6 103 aa16.34■□□□□ 0.21
SPG11-203ENST00000535302 ERCC6Q03468 1493 aa16.33■□□□□ 0.21
SPG11-203ENST00000535302 DCAF11Q8TEB1 546 aa16.33■□□□□ 0.2
SPG11-203ENST00000535302 WRNQ14191 1432 aaPredicted RBP eCLIP16.33■□□□□ 0.2
SPG11-203ENST00000535302 APBB1O00213 710 aa16.32■□□□□ 0.2
SPG11-203ENST00000535302 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.32■□□□□ 0.2
SPG11-203ENST00000535302 B4GALNT3Q6L9W6 998 aa16.31■□□□□ 0.2
SPG11-203ENST00000535302 FOXD1Q16676 465 aa16.31■□□□□ 0.2
SPG11-203ENST00000535302 CDCA8Q53HL2 280 aa16.3■□□□□ 0.2
SPG11-203ENST00000535302 BAZ1BQ9UIG0 1483 aaKnown RBP16.3■□□□□ 0.2
SPG11-203ENST00000535302 STK26Q9P289 416 aa16.3■□□□□ 0.2
SPG11-203ENST00000535302 DRC7Q8IY82 874 aa16.29■□□□□ 0.2
SPG11-203ENST00000535302 NUDCQ9Y266 331 aa16.28■□□□□ 0.2
SPG11-203ENST00000535302 SRPK2P78362 688 aaKnown RBP16.27■□□□□ 0.2
SPG11-203ENST00000535302 ZNF330Q9Y3S2 320 aaPredicted RBP16.25■□□□□ 0.19
SPG11-203ENST00000535302 FBXO3Q9UK99 471 aa16.25■□□□□ 0.19
SPG11-203ENST00000535302 RB1CC1Q8TDY2 1594 aa16.25■□□□□ 0.19
SPG11-203ENST00000535302 KIF27Q86VH2 1401 aa16.25■□□□□ 0.19
SPG11-203ENST00000535302 CCNB3Q8WWL7 1395 aa16.23■□□□□ 0.19
SPG11-203ENST00000535302 GGT6Q6P531 493 aa16.22■□□□□ 0.19
SPG11-203ENST00000535302 GOLGA6L4A6NEF3 574 aa16.2■□□□□ 0.18
SPG11-203ENST00000535302 GZF1Q9H116 711 aaPredicted RBP16.19■□□□□ 0.18
SPG11-203ENST00000535302 GOLGA6L6A8MZA4 724 aa16.19■□□□□ 0.18
SPG11-203ENST00000535302 PAK3O75914 559 aaPredicted RBP16.18■□□□□ 0.18
SPG11-203ENST00000535302 PPP4R2Q9NY27 417 aa16.18■□□□□ 0.18
SPG11-203ENST00000535302 TMF1P82094 1093 aa16.18■□□□□ 0.18
SPG11-203ENST00000535302 NUTM2DQ5VT03 806 aaPredicted RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms