RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	DCAF8	Q5TAQ9	597 aa		8.14	□□□□□ -1.11
CD44-238	ENST00000534296	RASEF	Q8IZ41	740 aa		8.13	□□□□□ -1.11
CD44-238	ENST00000534296	CIZ1	Q9ULV3	898 aa	Predicted RBP	8.12	□□□□□ -1.11
CD44-238	ENST00000534296	ZNF579	Q8NAF0	562 aa	Known RBP	8.11	□□□□□ -1.11
CD44-238	ENST00000534296	TRIM41	Q8WV44	630 aa		8.09	□□□□□ -1.11
CD44-238	ENST00000534296	CCDC61	Q9Y6R9	512 aa		8.07	□□□□□ -1.12
CD44-238	ENST00000534296	PHF12	Q96QT6	1004 aa		8.04	□□□□□ -1.12
CD44-238	ENST00000534296	PYGB	P11216	843 aa		8.01	□□□□□ -1.13
CD44-238	ENST00000534296	SGIP1	Q9BQI5	828 aa		8.01	□□□□□ -1.13
CD44-238	ENST00000534296	GABBR2	O75899	941 aa		8	□□□□□ -1.13
CD44-238	ENST00000534296	KIF12	Q96FN5	646 aa		8	□□□□□ -1.13
CD44-238	ENST00000534296	PCDHB13	Q9Y5F0	798 aa		8	□□□□□ -1.13
CD44-238	ENST00000534296	CHRM1	P11229	460 aa	Predicted RBP	7.99	□□□□□ -1.13
CD44-238	ENST00000534296	ZNF467	Q7Z7K2	595 aa	Predicted RBP	7.98	□□□□□ -1.13
CD44-238	ENST00000534296	MAP3K13	O43283	966 aa		7.97	□□□□□ -1.13
CD44-238	ENST00000534296	ECM2	O94769	699 aa	Predicted RBP	7.96	□□□□□ -1.14
CD44-238	ENST00000534296	AMER1	Q5JTC6	1135 aa	Predicted RBP	7.96	□□□□□ -1.14
CD44-238	ENST00000534296	DCBLD2	Q96PD2	775 aa		7.96	□□□□□ -1.14
CD44-238	ENST00000534296	TAOK2	Q9UL54	1235 aa		7.96	□□□□□ -1.14
CD44-238	ENST00000534296	MS4A3	Q96HJ5	214 aa		7.95	□□□□□ -1.14
CD44-238	ENST00000534296	GALR2	O43603	387 aa	Predicted RBP	7.93	□□□□□ -1.14
CD44-238	ENST00000534296	IFNL1	Q8IU54	200 aa		7.9	□□□□□ -1.14
CD44-238	ENST00000534296	RIOK3	O14730	519 aa	Known RBP	7.89	□□□□□ -1.15
CD44-238	ENST00000534296	TIE1	P35590	1138 aa		7.89	□□□□□ -1.15
CD44-238	ENST00000534296	PKD2	Q13563	968 aa		7.89	□□□□□ -1.15
CD44-238	ENST00000534296	PDAP1	Q13442	181 aa	Known RBP	7.88	□□□□□ -1.15
CD44-238	ENST00000534296	PCDHB8	Q9UN66	801 aa		7.88	□□□□□ -1.15
CD44-238	ENST00000534296	LHX8	Q68G74	356 aa		7.87	□□□□□ -1.15
CD44-238	ENST00000534296	VGF	O15240	615 aa	Predicted RBP	7.86	□□□□□ -1.15
CD44-238	ENST00000534296	GOLGA2	Q08379	1002 aa		7.86	□□□□□ -1.15
CD44-238	ENST00000534296	TMEM106C	Q9BVX2	250 aa		7.85	□□□□□ -1.15
CD44-238	ENST00000534296	PSEN1	P49768	467 aa		7.84	□□□□□ -1.15
CD44-238	ENST00000534296	ASTL	Q6HA08	431 aa	Predicted RBP	7.83	□□□□□ -1.16
CD44-238	ENST00000534296	DCAF8L2	P0C7V8	631 aa		7.82	□□□□□ -1.16
CD44-238	ENST00000534296	BMP2K	Q9NSY1	1161 aa	Predicted RBP	7.82	□□□□□ -1.16
CD44-238	ENST00000534296	TTLL13P	A6NNM8	815 aa		7.81	□□□□□ -1.16
CD44-238	ENST00000534296	ATMIN	O43313	823 aa	Predicted RBP	7.81	□□□□□ -1.16
CD44-238	ENST00000534296	RGL2	O15211	777 aa		7.8	□□□□□ -1.16
CD44-238	ENST00000534296	POTEI	P0CG38	1075 aa		7.8	□□□□□ -1.16
CD44-238	ENST00000534296	RNF25	Q96BH1	459 aa	Predicted RBP	7.8	□□□□□ -1.16
CD44-238	ENST00000534296	RTN4	Q9NQC3	1192 aa	Known RBP	7.8	□□□□□ -1.16
CD44-238	ENST00000534296	TRPC6	Q9Y210	931 aa		7.8	□□□□□ -1.16
CD44-238	ENST00000534296	SLC39A7	Q92504	469 aa		7.79	□□□□□ -1.16
CD44-238	ENST00000534296	TRIM35	Q9UPQ4	493 aa		7.79	□□□□□ -1.16
CD44-238	ENST00000534296	MKRN3	Q13064	507 aa	Known RBP	7.78	□□□□□ -1.16
CD44-238	ENST00000534296	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	7.77	□□□□□ -1.17
CD44-238	ENST00000534296	STK25	O00506	426 aa		7.77	□□□□□ -1.17
CD44-238	ENST00000534296	ATN1	P54259	1190 aa	Predicted RBP	7.77	□□□□□ -1.17
CD44-238	ENST00000534296	IER5L	Q5T953	404 aa		7.77	□□□□□ -1.17
CD44-238	ENST00000534296	ZFP91	Q96JP5	570 aa	Predicted RBP	7.77	□□□□□ -1.17
CD44-238	ENST00000534296	C7	P10643	843 aa		7.76	□□□□□ -1.17
CD44-238	ENST00000534296	STK24	Q9Y6E0	443 aa		7.75	□□□□□ -1.17
CD44-238	ENST00000534296	SEC24B	O95487	1268 aa		7.74	□□□□□ -1.17
CD44-238	ENST00000534296	BCL11B	Q9C0K0	894 aa	Predicted RBP	7.74	□□□□□ -1.17
CD44-238	ENST00000534296	CABP2	Q9NPB3	220 aa		7.74	□□□□□ -1.17
CD44-238	ENST00000534296	METRN	Q9UJH8	293 aa		7.74	□□□□□ -1.17
CD44-238	ENST00000534296	PLCG2	P16885	1265 aa		7.72	□□□□□ -1.17
CD44-238	ENST00000534296	CHGA	P10645	457 aa	Known RBP	7.71	□□□□□ -1.18
CD44-238	ENST00000534296	HS6ST3	Q8IZP7	471 aa		7.7	□□□□□ -1.18
CD44-238	ENST00000534296	PELP1	Q8IZL8	1130 aa	Known RBP	7.69	□□□□□ -1.18
CD44-238	ENST00000534296	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	7.68	□□□□□ -1.18
CD44-238	ENST00000534296	SOX12	O15370	315 aa		7.67	□□□□□ -1.18
CD44-238	ENST00000534296	OCEL1	Q9H607	264 aa		7.67	□□□□□ -1.18
CD44-238	ENST00000534296	RYDEN	Q9NUL5	291 aa	Known RBP	7.67	□□□□□ -1.18
CD44-238	ENST00000534296		G3V3G9	751 aa		7.66	□□□□□ -1.18
CD44-238	ENST00000534296	EFCAB3	Q8N7B9	438 aa		7.66	□□□□□ -1.18
CD44-238	ENST00000534296	NLRP6	P59044	892 aa		7.64	□□□□□ -1.19
CD44-238	ENST00000534296	IRX5	P78411	483 aa	Predicted RBP	7.64	□□□□□ -1.19
CD44-238	ENST00000534296	MAMSTR	Q6ZN01	415 aa		7.62	□□□□□ -1.19
CD44-238	ENST00000534296	L3MBTL3	Q96JM7	780 aa	Predicted RBP	7.62	□□□□□ -1.19
CD44-238	ENST00000534296	DNAJC5	Q9H3Z4	198 aa		7.6	□□□□□ -1.19
CD44-238	ENST00000534296	SCUBE2	Q9NQ36	999 aa		7.6	□□□□□ -1.19
CD44-238	ENST00000534296	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	7.6	□□□□□ -1.19
CD44-238	ENST00000534296	COLQ	Q9Y215	455 aa	Predicted RBP	7.6	□□□□□ -1.19
CD44-238	ENST00000534296	PHF8	Q9UPP1	1060 aa		7.59	□□□□□ -1.19
CD44-238	ENST00000534296	C3orf67	Q6ZVT6	689 aa		7.57	□□□□□ -1.2
CD44-238	ENST00000534296	PDCD7	Q8N8D1	485 aa	Known RBP	7.57	□□□□□ -1.2
CD44-238	ENST00000534296	BBX	Q8WY36	941 aa	Predicted RBP	7.57	□□□□□ -1.2
CD44-238	ENST00000534296	ILDR1	Q86SU0	546 aa	Predicted RBP	7.56	□□□□□ -1.2
CD44-238	ENST00000534296	MFRP	Q9BY79	579 aa		7.56	□□□□□ -1.2
CD44-238	ENST00000534296	OTUD5	Q96G74	571 aa		7.55	□□□□□ -1.2
CD44-238	ENST00000534296	BOLA1	Q9Y3E2	137 aa		7.55	□□□□□ -1.2
CD44-238	ENST00000534296	POTEF	A5A3E0	1075 aa		7.54	□□□□□ -1.2
CD44-238	ENST00000534296	POTEB2	H3BUK9	544 aa		7.54	□□□□□ -1.2
CD44-238	ENST00000534296	FBXO22	Q8NEZ5	403 aa		7.53	□□□□□ -1.2
CD44-238	ENST00000534296	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	7.53	□□□□□ -1.2
CD44-238	ENST00000534296	PLSCR2	Q9NRY7	297 aa		7.52	□□□□□ -1.21
CD44-238	ENST00000534296	DPY19L2	Q6NUT2	758 aa		7.5	□□□□□ -1.21
CD44-238	ENST00000534296	MS4A4A	Q96JQ5	239 aa		7.5	□□□□□ -1.21
CD44-238	ENST00000534296	NKX1-1	Q15270	411 aa	Predicted RBP	7.49	□□□□□ -1.21
CD44-238	ENST00000534296	MICALL2	Q8IY33	904 aa		7.49	□□□□□ -1.21
CD44-238	ENST00000534296	SPRYD3	Q8NCJ5	442 aa		7.49	□□□□□ -1.21
CD44-238	ENST00000534296	SLAIN1	Q8ND83	568 aa		7.46	□□□□□ -1.22
CD44-238	ENST00000534296	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	7.46	□□□□□ -1.22
CD44-238	ENST00000534296	GTPBP6	O43824	516 aa	Predicted RBP	7.45	□□□□□ -1.22
CD44-238	ENST00000534296	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	7.45	□□□□□ -1.22
CD44-238	ENST00000534296	CFAP44	Q96MT7	982 aa		7.45	□□□□□ -1.22
CD44-238	ENST00000534296	POTEJ	P0CG39	1038 aa		7.43	□□□□□ -1.22
CD44-238	ENST00000534296	POTEM	A6NI47	508 aa		7.42	□□□□□ -1.22
CD44-238	ENST00000534296	SNPH	O15079	494 aa		7.42	□□□□□ -1.22

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