RNA–Protein interactions for RNA: ENST00000531513.5

USP47-211, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 936 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-211ENST00000531513 MS4A3Q96HJ5 214 aa13.91□□□□□ -0.18
USP47-211ENST00000531513 PLCD3Q8N3E9 789 aa13.9□□□□□ -0.18
USP47-211ENST00000531513 CCDC61Q9Y6R9 512 aa13.9□□□□□ -0.18
USP47-211ENST00000531513 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
USP47-211ENST00000531513 RASEFQ8IZ41 740 aa13.86□□□□□ -0.19
USP47-211ENST00000531513 KIF12Q96FN5 646 aa13.8□□□□□ -0.2
USP47-211ENST00000531513 ASTLQ6HA08 431 aaPredicted RBP13.79□□□□□ -0.2
USP47-211ENST00000531513 ZBTB47Q9UFB7 747 aaPredicted RBP13.76□□□□□ -0.21
USP47-211ENST00000531513 POTEMA6NI47 508 aa13.75□□□□□ -0.21
USP47-211ENST00000531513 ATMINO43313 823 aaPredicted RBP13.75□□□□□ -0.21
USP47-211ENST00000531513 POTEJP0CG39 1038 aa13.73□□□□□ -0.21
USP47-211ENST00000531513 NUBP1P53384 320 aa13.73□□□□□ -0.21
USP47-211ENST00000531513 METRNQ9UJH8 293 aa13.73□□□□□ -0.21
USP47-211ENST00000531513 MAP3K13O43283 966 aa13.72□□□□□ -0.21
USP47-211ENST00000531513 POTEGQ6S5H5 508 aa13.7□□□□□ -0.22
USP47-211ENST00000531513 TRPC6Q9Y210 931 aa13.69□□□□□ -0.22
USP47-211ENST00000531513 C7P10643 843 aa13.68□□□□□ -0.22
USP47-211ENST00000531513 SLC39A7Q92504 469 aa13.68□□□□□ -0.22
USP47-211ENST00000531513 FBXO3Q9UK99 471 aa13.68□□□□□ -0.22
USP47-211ENST00000531513 ATN1P54259 1190 aaPredicted RBP13.66□□□□□ -0.22
USP47-211ENST00000531513 BMP2KQ9NSY1 1161 aaPredicted RBP13.65□□□□□ -0.22
USP47-211ENST00000531513 FAM212AQ96EL1 285 aa13.63□□□□□ -0.23
USP47-211ENST00000531513 TIE1P35590 1138 aa13.6□□□□□ -0.23
USP47-211ENST00000531513 PCDHB13Q9Y5F0 798 aa13.6□□□□□ -0.23
USP47-211ENST00000531513 LCE2DQ5TA82 110 aaPredicted RBP13.59□□□□□ -0.23
USP47-211ENST00000531513 MAMSTRQ6ZN01 415 aa13.57□□□□□ -0.24
USP47-211ENST00000531513 SGIP1Q9BQI5 828 aa13.57□□□□□ -0.24
USP47-211ENST00000531513 VASPP50552 380 aaPredicted RBP13.56□□□□□ -0.24
USP47-211ENST00000531513 TTLL13PA6NNM8 815 aa13.54□□□□□ -0.24
USP47-211ENST00000531513 PCDH10Q9P2E7 1040 aa13.54□□□□□ -0.24
USP47-211ENST00000531513 POTEFA5A3E0 1075 aa13.53□□□□□ -0.24
USP47-211ENST00000531513 IFNL1Q8IU54 200 aa13.53□□□□□ -0.24
USP47-211ENST00000531513 DCAF8Q5TAQ9 597 aa13.5□□□□□ -0.25
USP47-211ENST00000531513 KLHL34Q8N239 644 aa13.47□□□□□ -0.25
USP47-211ENST00000531513 PYGBP11216 843 aa13.46□□□□□ -0.25
USP47-211ENST00000531513 SCUBE2Q9NQ36 999 aa13.46□□□□□ -0.25
USP47-211ENST00000531513 TRIM35Q9UPQ4 493 aa13.46□□□□□ -0.25
USP47-211ENST00000531513 TMEM106CQ9BVX2 250 aa13.42□□□□□ -0.26
USP47-211ENST00000531513 COLQQ9Y215 455 aaPredicted RBP13.42□□□□□ -0.26
USP47-211ENST00000531513 FAM163AQ96GL9 167 aaPredicted RBP13.41□□□□□ -0.26
USP47-211ENST00000531513 SEC24BO95487 1268 aa13.39□□□□□ -0.27
USP47-211ENST00000531513 IER5LQ5T953 404 aa13.39□□□□□ -0.27
USP47-211ENST00000531513 PCDHB8Q9UN66 801 aa13.36□□□□□ -0.27
USP47-211ENST00000531513 GSE1Q14687 1217 aa13.35□□□□□ -0.27
USP47-211ENST00000531513 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
USP47-211ENST00000531513 SPOCK2Q92563 424 aa13.27□□□□□ -0.29
USP47-211ENST00000531513 PLCG2P16885 1265 aa13.25□□□□□ -0.29
USP47-211ENST00000531513 IRX5P78411 483 aaPredicted RBP13.25□□□□□ -0.29
USP47-211ENST00000531513 ZNF467Q7Z7K2 595 aaPredicted RBP13.25□□□□□ -0.29
USP47-211ENST00000531513 CHRM1P11229 460 aaPredicted RBP13.24□□□□□ -0.29
USP47-211ENST00000531513 CIZ1Q9ULV3 898 aaPredicted RBP13.19□□□□□ -0.3
USP47-211ENST00000531513 OCEL1Q9H607 264 aa13.17□□□□□ -0.3
USP47-211ENST00000531513 CDAN1Q8IWY9 1227 aa13.16□□□□□ -0.3
USP47-211ENST00000531513 PSEN1P49768 467 aa13.15□□□□□ -0.3
USP47-211ENST00000531513 GOLGA2Q08379 1002 aa13.11□□□□□ -0.31
USP47-211ENST00000531513 SLAIN1Q8ND83 568 aa13.11□□□□□ -0.31
USP47-211ENST00000531513 ST18O60284 1047 aa13.1□□□□□ -0.31
USP47-211ENST00000531513 MKRN3Q13064 507 aaKnown RBP13.08□□□□□ -0.32
USP47-211ENST00000531513 PDAP1Q13442 181 aaKnown RBP13.08□□□□□ -0.32
USP47-211ENST00000531513 PDCD7Q8N8D1 485 aaKnown RBP13.08□□□□□ -0.32
USP47-211ENST00000531513 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.01□□□□□ -0.334e-8■■■■□ 21.4
USP47-211ENST00000531513 EIF2AK3Q9NZJ5 1116 aaKnown RBP13□□□□□ -0.33
USP47-211ENST00000531513 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
USP47-211ENST00000531513 CABP2Q9NPB3 220 aa12.99□□□□□ -0.33
USP47-211ENST00000531513 ILDR1Q86SU0 546 aaPredicted RBP12.96□□□□□ -0.33
USP47-211ENST00000531513 C3orf67Q6ZVT6 689 aa12.94□□□□□ -0.34
USP47-211ENST00000531513 L3MBTL3Q96JM7 780 aaPredicted RBP12.94□□□□□ -0.34
USP47-211ENST00000531513 TMEM121BQ9BXQ6 578 aaPredicted RBP12.93□□□□□ -0.34
USP47-211ENST00000531513 DPY19L2Q6NUT2 758 aa12.91□□□□□ -0.34
USP47-211ENST00000531513 SPNS2Q8IVW8 549 aa12.88□□□□□ -0.35
USP47-211ENST00000531513 RNF25Q96BH1 459 aaPredicted RBP12.88□□□□□ -0.35
USP47-211ENST00000531513 MMRN1Q13201 1228 aa12.87□□□□□ -0.35
USP47-211ENST00000531513 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
USP47-211ENST00000531513 SNPHO15079 494 aa12.85□□□□□ -0.35
USP47-211ENST00000531513 EFCAB3Q8N7B9 438 aa12.84□□□□□ -0.35
USP47-211ENST00000531513 MARVELD3Q96A59 401 aa12.83□□□□□ -0.36
USP47-211ENST00000531513 BOLA1Q9Y3E2 137 aa12.82□□□□□ -0.36
USP47-211ENST00000531513 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.8□□□□□ -0.36
USP47-211ENST00000531513 ZFP91Q96JP5 570 aaPredicted RBP12.8□□□□□ -0.36
USP47-211ENST00000531513 G3V3G9 751 aa12.79□□□□□ -0.36
USP47-211ENST00000531513 VGFO15240 615 aaPredicted RBP12.78□□□□□ -0.36
USP47-211ENST00000531513 POTEB3A0JP26 581 aa12.7□□□□□ -0.38
USP47-211ENST00000531513 POTEBQ6S5H4 581 aa12.7□□□□□ -0.38
USP47-211ENST00000531513 SOX12O15370 315 aa12.69□□□□□ -0.38
USP47-211ENST00000531513 MS4A4AQ96JQ5 239 aa12.69□□□□□ -0.38
USP47-211ENST00000531513 EMP3P54852 163 aa12.68□□□□□ -0.38
USP47-211ENST00000531513 PHF8Q9UPP1 1060 aa12.68□□□□□ -0.38
USP47-211ENST00000531513 KRTAP3-3Q9BYR6 98 aa12.67□□□□□ -0.38
USP47-211ENST00000531513 KRTAP3-2Q9BYR7 98 aa12.67□□□□□ -0.38
USP47-211ENST00000531513 MICALL2Q8IY33 904 aa12.66□□□□□ -0.38
USP47-211ENST00000531513 HOXB3P14651 431 aaPredicted RBP12.64□□□□□ -0.39
USP47-211ENST00000531513 BCL11BQ9C0K0 894 aaPredicted RBP12.64□□□□□ -0.39
USP47-211ENST00000531513 ECM2O94769 699 aaPredicted RBP12.63□□□□□ -0.39
USP47-211ENST00000531513 HS3ST6Q96QI5 342 aa12.63□□□□□ -0.39
USP47-211ENST00000531513 TAOK2Q9UL54 1235 aa12.62□□□□□ -0.39
USP47-211ENST00000531513 TMEM92Q6UXU6 159 aa12.6□□□□□ -0.39
USP47-211ENST00000531513 STK24Q9Y6E0 443 aa12.6□□□□□ -0.39
USP47-211ENST00000531513 PKD2Q13563 968 aa12.59□□□□□ -0.39
USP47-211ENST00000531513 FAM205CA6NFA0 338 aa12.58□□□□□ -0.4
USP47-211ENST00000531513 STK25O00506 426 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms