RNA–Protein interactions for RNA: ENST00000530906.1

PCF11-205, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 628 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-205ENST00000530906 MS4A3Q96HJ5 214 aa10.08□□□□□ -0.8
PCF11-205ENST00000530906 PELP1Q8IZL8 1130 aaKnown RBP10.06□□□□□ -0.8
PCF11-205ENST00000530906 FKBP8Q14318 412 aa10.05□□□□□ -0.8
PCF11-205ENST00000530906 PLEKHG5O94827 1062 aa10.04□□□□□ -0.8
PCF11-205ENST00000530906 ASTLQ6HA08 431 aaPredicted RBP10.03□□□□□ -0.8
PCF11-205ENST00000530906 RASEFQ8IZ41 740 aa10.03□□□□□ -0.8
PCF11-205ENST00000530906 POTEB2H3BUK9 544 aa10.02□□□□□ -0.81
PCF11-205ENST00000530906 KIF12Q96FN5 646 aa10.02□□□□□ -0.81
PCF11-205ENST00000530906 ATMINO43313 823 aaPredicted RBP10□□□□□ -0.81
PCF11-205ENST00000530906 PLCD3Q8N3E9 789 aa9.99□□□□□ -0.81
PCF11-205ENST00000530906 OTUD5Q96G74 571 aa9.96□□□□□ -0.82
PCF11-205ENST00000530906 MAP3K13O43283 966 aa9.95□□□□□ -0.82
PCF11-205ENST00000530906 NUBP1P53384 320 aa9.95□□□□□ -0.82
PCF11-205ENST00000530906 MYO15BQ96JP2 1530 aa9.94□□□□□ -0.82
PCF11-205ENST00000530906 ATN1P54259 1190 aaPredicted RBP9.93□□□□□ -0.82
PCF11-205ENST00000530906 SLC39A7Q92504 469 aa9.93□□□□□ -0.82
PCF11-205ENST00000530906 METRNQ9UJH8 293 aa9.93□□□□□ -0.82
PCF11-205ENST00000530906 TRPC6Q9Y210 931 aa9.93□□□□□ -0.82
PCF11-205ENST00000530906 C7P10643 843 aa9.92□□□□□ -0.82
PCF11-205ENST00000530906 ZBTB47Q9UFB7 747 aaPredicted RBP9.92□□□□□ -0.82
PCF11-205ENST00000530906 BMP2KQ9NSY1 1161 aaPredicted RBP9.91□□□□□ -0.82
PCF11-205ENST00000530906 POTEJP0CG39 1038 aa9.88□□□□□ -0.83
PCF11-205ENST00000530906 TIE1P35590 1138 aa9.87□□□□□ -0.83
PCF11-205ENST00000530906 SGIP1Q9BQI5 828 aa9.85□□□□□ -0.83
PCF11-205ENST00000530906 FBXO3Q9UK99 471 aa9.84□□□□□ -0.83
PCF11-205ENST00000530906 POTEFA5A3E0 1075 aa9.83□□□□□ -0.84
PCF11-205ENST00000530906 TTLL13PA6NNM8 815 aa9.83□□□□□ -0.84
PCF11-205ENST00000530906 FAM212AQ96EL1 285 aa9.83□□□□□ -0.84
PCF11-205ENST00000530906 PCDHB13Q9Y5F0 798 aa9.82□□□□□ -0.84
PCF11-205ENST00000530906 SHROOM4Q9ULL8 1493 aa9.8□□□□□ -0.84
PCF11-205ENST00000530906 IFNL1Q8IU54 200 aa9.8□□□□□ -0.84
PCF11-205ENST00000530906 MAMSTRQ6ZN01 415 aa9.76□□□□□ -0.85
PCF11-205ENST00000530906 COLQQ9Y215 455 aaPredicted RBP9.76□□□□□ -0.85
PCF11-205ENST00000530906 TRIM35Q9UPQ4 493 aa9.75□□□□□ -0.85
PCF11-205ENST00000530906 NACADO15069 1562 aa9.75□□□□□ -0.85
PCF11-205ENST00000530906 VASPP50552 380 aaPredicted RBP9.74□□□□□ -0.85
PCF11-205ENST00000530906 DCAF8Q5TAQ9 597 aa9.74□□□□□ -0.85
PCF11-205ENST00000530906 DCAF8L2P0C7V8 631 aa9.73□□□□□ -0.85
PCF11-205ENST00000530906 IER5LQ5T953 404 aa9.73□□□□□ -0.85
PCF11-205ENST00000530906 PYGBP11216 843 aa9.71□□□□□ -0.86
PCF11-205ENST00000530906 TMEM106CQ9BVX2 250 aa9.71□□□□□ -0.86
PCF11-205ENST00000530906 SCUBE2Q9NQ36 999 aa9.7□□□□□ -0.86
PCF11-205ENST00000530906 SEC24BO95487 1268 aa9.69□□□□□ -0.86
PCF11-205ENST00000530906 POTEMA6NI47 508 aa9.66□□□□□ -0.86
PCF11-205ENST00000530906 KLHL34Q8N239 644 aa9.66□□□□□ -0.86
PCF11-205ENST00000530906 LCE2DQ5TA82 110 aaPredicted RBP9.65□□□□□ -0.86
PCF11-205ENST00000530906 PCDHB8Q9UN66 801 aa9.65□□□□□ -0.86
PCF11-205ENST00000530906 POTEGQ6S5H5 508 aa9.64□□□□□ -0.87
PCF11-205ENST00000530906 IRX5P78411 483 aaPredicted RBP9.63□□□□□ -0.87
PCF11-205ENST00000530906 GSE1Q14687 1217 aa9.63□□□□□ -0.87
PCF11-205ENST00000530906 CHRM1P11229 460 aaPredicted RBP9.6□□□□□ -0.87
PCF11-205ENST00000530906 ABCC9O60706 1549 aa9.6□□□□□ -0.87
PCF11-205ENST00000530906 RB1CC1Q8TDY2 1594 aa9.59□□□□□ -0.87
PCF11-205ENST00000530906 IFNLR1Q8IU57 520 aaPredicted RBP9.59□□□□□ -0.87
PCF11-205ENST00000530906 PLCG2P16885 1265 aa9.58□□□□□ -0.88
PCF11-205ENST00000530906 FAM163AQ96GL9 167 aaPredicted RBP9.58□□□□□ -0.88
PCF11-205ENST00000530906 ZNF467Q7Z7K2 595 aaPredicted RBP9.57□□□□□ -0.88
PCF11-205ENST00000530906 SCRIBQ14160 1630 aa9.56□□□□□ -0.88
PCF11-205ENST00000530906 SUPT5HO00267 1087 aaKnown RBP9.56□□□□□ -0.88
PCF11-205ENST00000530906 OCEL1Q9H607 264 aa9.56□□□□□ -0.88
PCF11-205ENST00000530906 PLSCR2Q9NRY7 297 aa9.56□□□□□ -0.88
PCF11-205ENST00000530906 SPOCK2Q92563 424 aa9.54□□□□□ -0.88
PCF11-205ENST00000530906 SLAIN1Q8ND83 568 aa9.52□□□□□ -0.89
PCF11-205ENST00000530906 PCDH10Q9P2E7 1040 aa9.5□□□□□ -0.89
PCF11-205ENST00000530906 PSEN1P49768 467 aa9.49□□□□□ -0.89
PCF11-205ENST00000530906 PDCD7Q8N8D1 485 aaKnown RBP9.49□□□□□ -0.89
PCF11-205ENST00000530906 CIZ1Q9ULV3 898 aaPredicted RBP9.47□□□□□ -0.89
PCF11-205ENST00000530906 PDAP1Q13442 181 aaKnown RBP9.45□□□□□ -0.9
PCF11-205ENST00000530906 MKRN3Q13064 507 aaKnown RBP9.44□□□□□ -0.9
PCF11-205ENST00000530906 ILDR1Q86SU0 546 aaPredicted RBP9.44□□□□□ -0.9
PCF11-205ENST00000530906 ST18O60284 1047 aa9.43□□□□□ -0.9
PCF11-205ENST00000530906 GOLGA2Q08379 1002 aa9.43□□□□□ -0.9
PCF11-205ENST00000530906 RSF1Q96T23 1441 aaPredicted RBP9.41□□□□□ -0.9
PCF11-205ENST00000530906 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.41□□□□□ -0.93e-7■■■■□ 24.9
PCF11-205ENST00000530906 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.41□□□□□ -0.9
PCF11-205ENST00000530906 L3MBTL3Q96JM7 780 aaPredicted RBP9.38□□□□□ -0.91
PCF11-205ENST00000530906 DPY19L2Q6NUT2 758 aa9.36□□□□□ -0.91
PCF11-205ENST00000530906 CABP2Q9NPB3 220 aa9.36□□□□□ -0.91
PCF11-205ENST00000530906 BAZ1AQ9NRL2 1556 aaPredicted RBP9.36□□□□□ -0.91
PCF11-205ENST00000530906 CDAN1Q8IWY9 1227 aa9.35□□□□□ -0.91
PCF11-205ENST00000530906 TRIM41Q8WV44 630 aa9.35□□□□□ -0.91
PCF11-205ENST00000530906 SNPHO15079 494 aa9.34□□□□□ -0.91
PCF11-205ENST00000530906 C3orf67Q6ZVT6 689 aa9.34□□□□□ -0.91
PCF11-205ENST00000530906 UNC13AQ9UPW8 1703 aa9.34□□□□□ -0.92
PCF11-205ENST00000530906 TMEM121BQ9BXQ6 578 aaPredicted RBP9.32□□□□□ -0.92
PCF11-205ENST00000530906 MROH2BQ7Z745 1585 aa9.29□□□□□ -0.92
PCF11-205ENST00000530906 CECR2Q9BXF3 1484 aa9.28□□□□□ -0.92
PCF11-205ENST00000530906 RNF25Q96BH1 459 aaPredicted RBP9.28□□□□□ -0.92
PCF11-205ENST00000530906 EFCAB3Q8N7B9 438 aa9.27□□□□□ -0.93
PCF11-205ENST00000530906 BOLA1Q9Y3E2 137 aa9.27□□□□□ -0.93
PCF11-205ENST00000530906 SMARCA4P51532 1647 aa9.25□□□□□ -0.93
PCF11-205ENST00000530906 RIOK3O14730 519 aaKnown RBP9.25□□□□□ -0.93
PCF11-205ENST00000530906 MARVELD3Q96A59 401 aa9.25□□□□□ -0.93
PCF11-205ENST00000530906 BICRAQ9NZM4 1560 aa9.23□□□□□ -0.93
PCF11-205ENST00000530906 TOP2AP11388 1531 aaKnown RBP9.21□□□□□ -0.93
PCF11-205ENST00000530906 WIZO95785 1651 aa9.21□□□□□ -0.93
PCF11-205ENST00000530906 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.21□□□□□ -0.94
PCF11-205ENST00000530906 ZFP91Q96JP5 570 aaPredicted RBP9.21□□□□□ -0.94
PCF11-205ENST00000530906 G3V3G9 751 aa9.2□□□□□ -0.94
PCF11-205ENST00000530906 VGFO15240 615 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms