RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 TSPYL2Q9H2G4 693 aaPredicted RBP6.54□□□□□ -1.36
CD44-212ENST00000524922 DCBLD2Q96PD2 775 aa6.53□□□□□ -1.36
CD44-212ENST00000524922 ASTLQ6HA08 431 aaPredicted RBP6.52□□□□□ -1.37
CD44-212ENST00000524922 POTEB2H3BUK9 544 aa6.51□□□□□ -1.37
CD44-212ENST00000524922 TRPC6Q9Y210 931 aa6.51□□□□□ -1.37
CD44-212ENST00000524922 PLCD3Q8N3E9 789 aa6.5□□□□□ -1.37
CD44-212ENST00000524922 MAP3K13O43283 966 aa6.49□□□□□ -1.37
CD44-212ENST00000524922 ATMINO43313 823 aaPredicted RBP6.49□□□□□ -1.37
CD44-212ENST00000524922 PLEKHG5O94827 1062 aa6.46□□□□□ -1.38
CD44-212ENST00000524922 FBXO3Q9UK99 471 aa6.46□□□□□ -1.38
CD44-212ENST00000524922 POTEJP0CG39 1038 aa6.45□□□□□ -1.38
CD44-212ENST00000524922 VASPP50552 380 aaPredicted RBP6.45□□□□□ -1.38
CD44-212ENST00000524922 BMP2KQ9NSY1 1161 aaPredicted RBP6.45□□□□□ -1.38
CD44-212ENST00000524922 POTEFA5A3E0 1075 aa6.44□□□□□ -1.38
CD44-212ENST00000524922 ATN1P54259 1190 aaPredicted RBP6.44□□□□□ -1.38
CD44-212ENST00000524922 ZBTB47Q9UFB7 747 aaPredicted RBP6.44□□□□□ -1.38
CD44-212ENST00000524922 OTUD5Q96G74 571 aa6.43□□□□□ -1.38
CD44-212ENST00000524922 SGIP1Q9BQI5 828 aa6.42□□□□□ -1.38
CD44-212ENST00000524922 TIE1P35590 1138 aa6.41□□□□□ -1.38
CD44-212ENST00000524922 IFNL1Q8IU54 200 aa6.41□□□□□ -1.38
CD44-212ENST00000524922 TTLL13PA6NNM8 815 aa6.4□□□□□ -1.38
CD44-212ENST00000524922 METRNQ9UJH8 293 aa6.4□□□□□ -1.38
CD44-212ENST00000524922 C7P10643 843 aa6.39□□□□□ -1.39
CD44-212ENST00000524922 IFNLR1Q8IU57 520 aaPredicted RBP6.39□□□□□ -1.39
CD44-212ENST00000524922 SLC39A7Q92504 469 aa6.39□□□□□ -1.39
CD44-212ENST00000524922 FAM212AQ96EL1 285 aa6.39□□□□□ -1.39
CD44-212ENST00000524922 PCDHB13Q9Y5F0 798 aa6.38□□□□□ -1.39
CD44-212ENST00000524922 COLQQ9Y215 455 aaPredicted RBP6.36□□□□□ -1.39
CD44-212ENST00000524922 PYGBP11216 843 aa6.34□□□□□ -1.39
CD44-212ENST00000524922 DCAF8Q5TAQ9 597 aa6.33□□□□□ -1.4
CD44-212ENST00000524922 TRIM35Q9UPQ4 493 aa6.33□□□□□ -1.4
CD44-212ENST00000524922 CHRM1P11229 460 aaPredicted RBP6.32□□□□□ -1.4
CD44-212ENST00000524922 IER5LQ5T953 404 aa6.31□□□□□ -1.4
CD44-212ENST00000524922 PCDHB8Q9UN66 801 aa6.31□□□□□ -1.4
CD44-212ENST00000524922 KLHL34Q8N239 644 aa6.3□□□□□ -1.4
CD44-212ENST00000524922 TMEM106CQ9BVX2 250 aa6.3□□□□□ -1.4
CD44-212ENST00000524922 IRX5P78411 483 aaPredicted RBP6.29□□□□□ -1.4
CD44-212ENST00000524922 GSE1Q14687 1217 aa6.29□□□□□ -1.4
CD44-212ENST00000524922 LCE2DQ5TA82 110 aaPredicted RBP6.29□□□□□ -1.4
CD44-212ENST00000524922 SPOCK2Q92563 424 aa6.28□□□□□ -1.4
CD44-212ENST00000524922 ZNF467Q7Z7K2 595 aaPredicted RBP6.24□□□□□ -1.41
CD44-212ENST00000524922 ILDR1Q86SU0 546 aaPredicted RBP6.24□□□□□ -1.41
CD44-212ENST00000524922 MAMSTRQ6ZN01 415 aa6.23□□□□□ -1.41
CD44-212ENST00000524922 PDCD7Q8N8D1 485 aaKnown RBP6.23□□□□□ -1.41
CD44-212ENST00000524922 SEC24BO95487 1268 aa6.21□□□□□ -1.42
CD44-212ENST00000524922 PSEN1P49768 467 aa6.2□□□□□ -1.42
CD44-212ENST00000524922 RNF25Q96BH1 459 aaPredicted RBP6.2□□□□□ -1.42
CD44-212ENST00000524922 OCEL1Q9H607 264 aa6.2□□□□□ -1.42
CD44-212ENST00000524922 SCUBE2Q9NQ36 999 aa6.19□□□□□ -1.42
CD44-212ENST00000524922 CIZ1Q9ULV3 898 aaPredicted RBP6.19□□□□□ -1.42
CD44-212ENST00000524922 PLCG2P16885 1265 aa6.17□□□□□ -1.42
CD44-212ENST00000524922 PDAP1Q13442 181 aaKnown RBP6.17□□□□□ -1.42
CD44-212ENST00000524922 POTEMA6NI47 508 aa6.15□□□□□ -1.42
CD44-212ENST00000524922 POTEGQ6S5H5 508 aa6.14□□□□□ -1.43
CD44-212ENST00000524922 TRIM41Q8WV44 630 aa6.14□□□□□ -1.43
CD44-212ENST00000524922 DPY19L2Q6NUT2 758 aa6.13□□□□□ -1.43
CD44-212ENST00000524922 SLAIN1Q8ND83 568 aa6.11□□□□□ -1.43
CD44-212ENST00000524922 CABP2Q9NPB3 220 aa6.11□□□□□ -1.43
CD44-212ENST00000524922 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.11□□□□□ -1.43
CD44-212ENST00000524922 MKRN3Q13064 507 aaKnown RBP6.1□□□□□ -1.43
CD44-212ENST00000524922 FAM163AQ96GL9 167 aaPredicted RBP6.1□□□□□ -1.43
CD44-212ENST00000524922 RIOK3O14730 519 aaKnown RBP6.08□□□□□ -1.44
CD44-212ENST00000524922 ST18O60284 1047 aa6.08□□□□□ -1.44
CD44-212ENST00000524922 PKD2Q13563 968 aa6.08□□□□□ -1.44
CD44-212ENST00000524922 EFCAB3Q8N7B9 438 aa6.08□□□□□ -1.44
CD44-212ENST00000524922 TMEM121BQ9BXQ6 578 aaPredicted RBP6.08□□□□□ -1.44
CD44-212ENST00000524922 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.07□□□□□ -1.44
CD44-212ENST00000524922 ZFP91Q96JP5 570 aaPredicted RBP6.07□□□□□ -1.44
CD44-212ENST00000524922 MS4A4AQ96JQ5 239 aa6.07□□□□□ -1.44
CD44-212ENST00000524922 GOLGA2Q08379 1002 aa6.06□□□□□ -1.44
CD44-212ENST00000524922 VGFO15240 615 aaPredicted RBP6.05□□□□□ -1.44
CD44-212ENST00000524922 L3MBTL3Q96JM7 780 aaPredicted RBP6.05□□□□□ -1.44
CD44-212ENST00000524922 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.05□□□□□ -1.44
CD44-212ENST00000524922 BOLA1Q9Y3E2 137 aa6.03□□□□□ -1.44
CD44-212ENST00000524922 TMEM92Q6UXU6 159 aa6.02□□□□□ -1.45
CD44-212ENST00000524922 FBXO22Q8NEZ5 403 aa6.02□□□□□ -1.45
CD44-212ENST00000524922 PCDH10Q9P2E7 1040 aa6.02□□□□□ -1.45
CD44-212ENST00000524922 RGL2O15211 777 aa6.01□□□□□ -1.45
CD44-212ENST00000524922 SOX12O15370 315 aa6.01□□□□□ -1.45
CD44-212ENST00000524922 HOXB3P14651 431 aaPredicted RBP6.01□□□□□ -1.45
CD44-212ENST00000524922 C3orf67Q6ZVT6 689 aa6□□□□□ -1.45
CD44-212ENST00000524922 PHF8Q9UPP1 1060 aa6□□□□□ -1.45
CD44-212ENST00000524922 MICALL2Q8IY33 904 aa5.99□□□□□ -1.45
CD44-212ENST00000524922 BCL11BQ9C0K0 894 aaPredicted RBP5.99□□□□□ -1.45
CD44-212ENST00000524922 POTEB3A0JP26 581 aa5.98□□□□□ -1.45
CD44-212ENST00000524922 ECM2O94769 699 aaPredicted RBP5.98□□□□□ -1.45
CD44-212ENST00000524922 POTEBQ6S5H4 581 aa5.98□□□□□ -1.45
CD44-212ENST00000524922 MFRPQ9BY79 579 aa5.98□□□□□ -1.45
CD44-212ENST00000524922 SNPHO15079 494 aa5.97□□□□□ -1.45
CD44-212ENST00000524922 CDAN1Q8IWY9 1227 aa5.97□□□□□ -1.45
CD44-212ENST00000524922 PLSCR2Q9NRY7 297 aa5.97□□□□□ -1.45
CD44-212ENST00000524922 MARVELD3Q96A59 401 aa5.96□□□□□ -1.46
CD44-212ENST00000524922 STK25O00506 426 aa5.93□□□□□ -1.46
CD44-212ENST00000524922 STK24Q9Y6E0 443 aa5.93□□□□□ -1.46
CD44-212ENST00000524922 NLRP6P59044 892 aa5.92□□□□□ -1.46
CD44-212ENST00000524922 KIF3CO14782 793 aa5.91□□□□□ -1.46
CD44-212ENST00000524922 HOXB1P14653 301 aaPredicted RBP5.9□□□□□ -1.46
CD44-212ENST00000524922 KRTAP3-3Q9BYR6 98 aa5.9□□□□□ -1.46
CD44-212ENST00000524922 KRTAP3-2Q9BYR7 98 aa5.9□□□□□ -1.46
CD44-212ENST00000524922 TAOK2Q9UL54 1235 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms