RNA–Protein interactions for RNA: ENST00000523540.1

PCM1-219, Transcript of pericentriolar material 1, humanhuman

TSL 2

Gene PCM1, Length 640 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-219ENST00000523540 TSPYL2Q9H2G4 693 aaPredicted RBP13.95□□□□□ -0.18
PCM1-219ENST00000523540 METRNQ9UJH8 293 aa13.95□□□□□ -0.18
PCM1-219ENST00000523540 SLC39A7Q92504 469 aa13.94□□□□□ -0.18
PCM1-219ENST00000523540 C7P10643 843 aa13.92□□□□□ -0.18
PCM1-219ENST00000523540 KIF12Q96FN5 646 aa13.92□□□□□ -0.18
PCM1-219ENST00000523540 FKBP8Q14318 412 aa13.91□□□□□ -0.18
PCM1-219ENST00000523540 POTEJP0CG39 1038 aa13.9□□□□□ -0.18
PCM1-219ENST00000523540 ATN1P54259 1190 aaPredicted RBP13.87□□□□□ -0.19
PCM1-219ENST00000523540 RASEFQ8IZ41 740 aa13.83□□□□□ -0.2
PCM1-219ENST00000523540 PLSCR2Q9NRY7 297 aa13.82□□□□□ -0.2
PCM1-219ENST00000523540 MIER1Q8N108 512 aa13.81□□□□□ -0.2
PCM1-219ENST00000523540 BMP2KQ9NSY1 1161 aaPredicted RBP13.81□□□□□ -0.2
PCM1-219ENST00000523540 TRPC6Q9Y210 931 aa13.81□□□□□ -0.2
PCM1-219ENST00000523540 POTEMA6NI47 508 aa13.79□□□□□ -0.2
PCM1-219ENST00000523540 MAP3K13O43283 966 aa13.79□□□□□ -0.2
PCM1-219ENST00000523540 PLEKHG5O94827 1062 aa13.79□□□□□ -0.2
PCM1-219ENST00000523540 POTEFA5A3E0 1075 aa13.78□□□□□ -0.2
PCM1-219ENST00000523540 MAMSTRQ6ZN01 415 aa13.78□□□□□ -0.2
PCM1-219ENST00000523540 TIE1P35590 1138 aa13.77□□□□□ -0.21
PCM1-219ENST00000523540 POTEGQ6S5H5 508 aa13.76□□□□□ -0.21
PCM1-219ENST00000523540 LCE2DQ5TA82 110 aaPredicted RBP13.69□□□□□ -0.22
PCM1-219ENST00000523540 SGIP1Q9BQI5 828 aa13.68□□□□□ -0.22
PCM1-219ENST00000523540 TTLL13PA6NNM8 815 aa13.67□□□□□ -0.22
PCM1-219ENST00000523540 NUBP1P53384 320 aa13.67□□□□□ -0.22
PCM1-219ENST00000523540 SCUBE2Q9NQ36 999 aa13.67□□□□□ -0.22
PCM1-219ENST00000523540 PLCD3Q8N3E9 789 aa13.66□□□□□ -0.22
PCM1-219ENST00000523540 PCDH10Q9P2E7 1040 aa13.62□□□□□ -0.23
PCM1-219ENST00000523540 ZBTB47Q9UFB7 747 aaPredicted RBP13.62□□□□□ -0.23
PCM1-219ENST00000523540 COLQQ9Y215 455 aaPredicted RBP13.62□□□□□ -0.23
PCM1-219ENST00000523540 FBXO3Q9UK99 471 aa13.61□□□□□ -0.23
PCM1-219ENST00000523540 PCDHB13Q9Y5F0 798 aa13.59□□□□□ -0.23
PCM1-219ENST00000523540 IER5LQ5T953 404 aa13.58□□□□□ -0.24
PCM1-219ENST00000523540 TRIM35Q9UPQ4 493 aa13.57□□□□□ -0.24
PCM1-219ENST00000523540 IFNL1Q8IU54 200 aa13.54□□□□□ -0.24
PCM1-219ENST00000523540 SEC24BO95487 1268 aa13.53□□□□□ -0.24
PCM1-219ENST00000523540 FAM163AQ96GL9 167 aaPredicted RBP13.53□□□□□ -0.24
PCM1-219ENST00000523540 FAM212AQ96EL1 285 aa13.5□□□□□ -0.25
PCM1-219ENST00000523540 TMEM106CQ9BVX2 250 aa13.45□□□□□ -0.26
PCM1-219ENST00000523540 IRX5P78411 483 aaPredicted RBP13.4□□□□□ -0.26
PCM1-219ENST00000523540 PLCG2P16885 1265 aa13.35□□□□□ -0.27
PCM1-219ENST00000523540 SLAIN1Q8ND83 568 aa13.34□□□□□ -0.27
PCM1-219ENST00000523540 VASPP50552 380 aaPredicted RBP13.33□□□□□ -0.28
PCM1-219ENST00000523540 DCAF8Q5TAQ9 597 aa13.33□□□□□ -0.28
PCM1-219ENST00000523540 PYGBP11216 843 aa13.32□□□□□ -0.28
PCM1-219ENST00000523540 ST18O60284 1047 aa13.28□□□□□ -0.28
PCM1-219ENST00000523540 OCEL1Q9H607 264 aa13.28□□□□□ -0.28
PCM1-219ENST00000523540 PCDHB8Q9UN66 801 aa13.28□□□□□ -0.28
PCM1-219ENST00000523540 CDAN1Q8IWY9 1227 aa13.27□□□□□ -0.29
PCM1-219ENST00000523540 GSE1Q14687 1217 aa13.18□□□□□ -0.3
PCM1-219ENST00000523540 PDCD7Q8N8D1 485 aaKnown RBP13.17□□□□□ -0.3
PCM1-219ENST00000523540 CHRM1P11229 460 aaPredicted RBP13.16□□□□□ -0.3
PCM1-219ENST00000523540 ZNF467Q7Z7K2 595 aaPredicted RBP13.16□□□□□ -0.3
PCM1-219ENST00000523540 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.15□□□□□ -0.3
PCM1-219ENST00000523540 TMEM121BQ9BXQ6 578 aaPredicted RBP13.14□□□□□ -0.31
PCM1-219ENST00000523540 KLHL34Q8N239 644 aa13.11□□□□□ -0.31
PCM1-219ENST00000523540 SNPHO15079 494 aa13.1□□□□□ -0.31
PCM1-219ENST00000523540 IFNLR1Q8IU57 520 aaPredicted RBP13.1□□□□□ -0.31
PCM1-219ENST00000523540 ILDR1Q86SU0 546 aaPredicted RBP13.06□□□□□ -0.32
PCM1-219ENST00000523540 MKRN3Q13064 507 aaKnown RBP13.05□□□□□ -0.32
PCM1-219ENST00000523540 PSEN1P49768 467 aa13.04□□□□□ -0.32
PCM1-219ENST00000523540 L3MBTL3Q96JM7 780 aaPredicted RBP13.03□□□□□ -0.32
PCM1-219ENST00000523540 GOLGA2Q08379 1002 aa13.01□□□□□ -0.33
PCM1-219ENST00000523540 SPOCK2Q92563 424 aa13.01□□□□□ -0.33
PCM1-219ENST00000523540 C3orf67Q6ZVT6 689 aa13□□□□□ -0.33
PCM1-219ENST00000523540 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13□□□□□ -0.334e-11■■■■□ 24
PCM1-219ENST00000523540 MARVELD3Q96A59 401 aa12.99□□□□□ -0.33
PCM1-219ENST00000523540 PDAP1Q13442 181 aaKnown RBP12.97□□□□□ -0.33
PCM1-219ENST00000523540 SPNS2Q8IVW8 549 aa12.97□□□□□ -0.33
PCM1-219ENST00000523540 MMRN1Q13201 1228 aa12.95□□□□□ -0.34
PCM1-219ENST00000523540 AMER1Q5JTC6 1135 aaPredicted RBP12.94□□□□□ -0.34
PCM1-219ENST00000523540 RTN4Q9NQC3 1192 aaKnown RBP12.93□□□□□ -0.34
PCM1-219ENST00000523540 DPY19L2Q6NUT2 758 aa12.91□□□□□ -0.34
PCM1-219ENST00000523540 EMP3P54852 163 aa12.88□□□□□ -0.35
PCM1-219ENST00000523540 CABP2Q9NPB3 220 aa12.88□□□□□ -0.35
PCM1-219ENST00000523540 POTEB3A0JP26 581 aa12.87□□□□□ -0.35
PCM1-219ENST00000523540 POTEBQ6S5H4 581 aa12.87□□□□□ -0.35
PCM1-219ENST00000523540 CIZ1Q9ULV3 898 aaPredicted RBP12.85□□□□□ -0.35
PCM1-219ENST00000523540 TRIM41Q8WV44 630 aa12.84□□□□□ -0.35
PCM1-219ENST00000523540 KRTAP3-3Q9BYR6 98 aa12.84□□□□□ -0.35
PCM1-219ENST00000523540 KRTAP3-2Q9BYR7 98 aa12.84□□□□□ -0.35
PCM1-219ENST00000523540 HS3ST6Q96QI5 342 aa12.83□□□□□ -0.36
PCM1-219ENST00000523540 BOLA1Q9Y3E2 137 aa12.83□□□□□ -0.36
PCM1-219ENST00000523540 HOXB3P14651 431 aaPredicted RBP12.81□□□□□ -0.36
PCM1-219ENST00000523540 FAM205CA6NFA0 338 aa12.79□□□□□ -0.36
PCM1-219ENST00000523540 G3V3G9 751 aa12.74□□□□□ -0.37
PCM1-219ENST00000523540 HOXB1P14653 301 aaPredicted RBP12.72□□□□□ -0.37
PCM1-219ENST00000523540 EFCAB3Q8N7B9 438 aa12.71□□□□□ -0.37
PCM1-219ENST00000523540 PKD2Q13563 968 aa12.67□□□□□ -0.38
PCM1-219ENST00000523540 DOK7Q18PE1 504 aa12.66□□□□□ -0.38
PCM1-219ENST00000523540 ZNF710Q8N1W2 664 aa12.64□□□□□ -0.39
PCM1-219ENST00000523540 TMEM92Q6UXU6 159 aa12.63□□□□□ -0.39
PCM1-219ENST00000523540 MICALL2Q8IY33 904 aa12.62□□□□□ -0.39
PCM1-219ENST00000523540 RNF25Q96BH1 459 aaPredicted RBP12.61□□□□□ -0.39
PCM1-219ENST00000523540 SOX12O15370 315 aa12.59□□□□□ -0.39
PCM1-219ENST00000523540 MS4A4AQ96JQ5 239 aa12.59□□□□□ -0.39
PCM1-219ENST00000523540 ERBB3P21860 1342 aa12.58□□□□□ -0.4
PCM1-219ENST00000523540 RIOK3O14730 519 aaKnown RBP12.56□□□□□ -0.4
PCM1-219ENST00000523540 RIMBP2O15034 1052 aa12.56□□□□□ -0.4
PCM1-219ENST00000523540 ECM2O94769 699 aaPredicted RBP12.56□□□□□ -0.4
PCM1-219ENST00000523540 ZSWIM6Q9HCJ5 1215 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms