RNA–Protein interactions for RNA: ENST00000523062.1

CSMD1-211, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 3

Gene CSMD1, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-211ENST00000523062 C7P10643 843 aa12.62□□□□□ -0.39
CSMD1-211ENST00000523062 SLC39A7Q92504 469 aa12.62□□□□□ -0.39
CSMD1-211ENST00000523062 METRNQ9UJH8 293 aa12.62□□□□□ -0.39
CSMD1-211ENST00000523062 ASTLQ6HA08 431 aaPredicted RBP12.61□□□□□ -0.39
CSMD1-211ENST00000523062 MNX1P50219 401 aaPredicted RBP12.56□□□□□ -0.4
CSMD1-211ENST00000523062 ATMINO43313 823 aaPredicted RBP12.55□□□□□ -0.4
CSMD1-211ENST00000523062 CSRNP3Q8WYN3 585 aa12.55□□□□□ -0.4
CSMD1-211ENST00000523062 POTEJP0CG39 1038 aa12.53□□□□□ -0.4
CSMD1-211ENST00000523062 MS4A3Q96HJ5 214 aa12.52□□□□□ -0.41
CSMD1-211ENST00000523062 DCAF8L2P0C7V8 631 aa12.51□□□□□ -0.41
CSMD1-211ENST00000523062 SPDYE4A6NLX3 237 aa12.5□□□□□ -0.41
CSMD1-211ENST00000523062 FAM163AQ96GL9 167 aaPredicted RBP12.5□□□□□ -0.41
CSMD1-211ENST00000523062 SCUBE2Q9NQ36 999 aa12.5□□□□□ -0.41
CSMD1-211ENST00000523062 SHROOM4Q9ULL8 1493 aa12.48□□□□□ -0.41
CSMD1-211ENST00000523062 MYO15BQ96JP2 1530 aa12.47□□□□□ -0.41
CSMD1-211ENST00000523062 LCE2DQ5TA82 110 aaPredicted RBP12.45□□□□□ -0.42
CSMD1-211ENST00000523062 ABCC9O60706 1549 aa12.44□□□□□ -0.42
CSMD1-211ENST00000523062 ATN1P54259 1190 aaPredicted RBP12.38□□□□□ -0.43
CSMD1-211ENST00000523062 NACADO15069 1562 aa12.35□□□□□ -0.43
CSMD1-211ENST00000523062 TSPYL2Q9H2G4 693 aaPredicted RBP12.34□□□□□ -0.43
CSMD1-211ENST00000523062 CCDC61Q9Y6R9 512 aa12.31□□□□□ -0.44
CSMD1-211ENST00000523062 KIF12Q96FN5 646 aa12.29□□□□□ -0.44
CSMD1-211ENST00000523062 POTEFA5A3E0 1075 aa12.28□□□□□ -0.44
CSMD1-211ENST00000523062 BMP2KQ9NSY1 1161 aaPredicted RBP12.27□□□□□ -0.45
CSMD1-211ENST00000523062 CDAN1Q8IWY9 1227 aa12.26□□□□□ -0.45
CSMD1-211ENST00000523062 TIE1P35590 1138 aa12.25□□□□□ -0.45
CSMD1-211ENST00000523062 RB1CC1Q8TDY2 1594 aa12.22□□□□□ -0.45
CSMD1-211ENST00000523062 SEC24BO95487 1268 aa12.21□□□□□ -0.45
CSMD1-211ENST00000523062 SCRIBQ14160 1630 aa12.21□□□□□ -0.46
CSMD1-211ENST00000523062 TRPC6Q9Y210 931 aa12.2□□□□□ -0.46
CSMD1-211ENST00000523062 PROM2Q8N271 834 aa12.19□□□□□ -0.46
CSMD1-211ENST00000523062 MAP3K13O43283 966 aa12.17□□□□□ -0.46
CSMD1-211ENST00000523062 COLQQ9Y215 455 aaPredicted RBP12.16□□□□□ -0.46
CSMD1-211ENST00000523062 TTLL13PA6NNM8 815 aa12.13□□□□□ -0.47
CSMD1-211ENST00000523062 IER5LQ5T953 404 aa12.13□□□□□ -0.47
CSMD1-211ENST00000523062 PLEKHG5O94827 1062 aa12.12□□□□□ -0.47
CSMD1-211ENST00000523062 ST18O60284 1047 aa12.07□□□□□ -0.48
CSMD1-211ENST00000523062 SLAIN1Q8ND83 568 aa12.07□□□□□ -0.48
CSMD1-211ENST00000523062 RASEFQ8IZ41 740 aa12.06□□□□□ -0.48
CSMD1-211ENST00000523062 SGIP1Q9BQI5 828 aa12.06□□□□□ -0.48
CSMD1-211ENST00000523062 TRIM35Q9UPQ4 493 aa12.06□□□□□ -0.48
CSMD1-211ENST00000523062 SUPT5HO00267 1087 aaKnown RBP12.05□□□□□ -0.48
CSMD1-211ENST00000523062 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
CSMD1-211ENST00000523062 MIER1Q8N108 512 aa12.01□□□□□ -0.49
CSMD1-211ENST00000523062 MMRN1Q13201 1228 aa12□□□□□ -0.49
CSMD1-211ENST00000523062 PCDHB13Q9Y5F0 798 aa11.99□□□□□ -0.49
CSMD1-211ENST00000523062 SPNS2Q8IVW8 549 aa11.97□□□□□ -0.49
CSMD1-211ENST00000523062 TMEM121BQ9BXQ6 578 aaPredicted RBP11.97□□□□□ -0.49
CSMD1-211ENST00000523062 PLCG2P16885 1265 aa11.95□□□□□ -0.5
CSMD1-211ENST00000523062 SNPHO15079 494 aa11.93□□□□□ -0.5
CSMD1-211ENST00000523062 UNC13AQ9UPW8 1703 aa11.91□□□□□ -0.5
CSMD1-211ENST00000523062 TMEM106CQ9BVX2 250 aa11.89□□□□□ -0.51
CSMD1-211ENST00000523062 RSF1Q96T23 1441 aaPredicted RBP11.87□□□□□ -0.51
CSMD1-211ENST00000523062 IFNL1Q8IU54 200 aa11.87□□□□□ -0.51
CSMD1-211ENST00000523062 IRX5P78411 483 aaPredicted RBP11.86□□□□□ -0.51
CSMD1-211ENST00000523062 NUBP1P53384 320 aa11.85□□□□□ -0.51
CSMD1-211ENST00000523062 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
CSMD1-211ENST00000523062 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
CSMD1-211ENST00000523062 CECR2Q9BXF3 1484 aa11.83□□□□□ -0.52
CSMD1-211ENST00000523062 OCEL1Q9H607 264 aa11.83□□□□□ -0.52
CSMD1-211ENST00000523062 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.82□□□□□ -0.52
CSMD1-211ENST00000523062 BICRAQ9NZM4 1560 aa11.82□□□□□ -0.52
CSMD1-211ENST00000523062 BAZ1AQ9NRL2 1556 aaPredicted RBP11.79□□□□□ -0.52
CSMD1-211ENST00000523062 MARVELD3Q96A59 401 aa11.79□□□□□ -0.52
CSMD1-211ENST00000523062 MROH2BQ7Z745 1585 aa11.79□□□□□ -0.52
CSMD1-211ENST00000523062 FAM212AQ96EL1 285 aa11.78□□□□□ -0.52
CSMD1-211ENST00000523062 SMARCA4P51532 1647 aa11.71□□□□□ -0.53
CSMD1-211ENST00000523062 EMP3P54852 163 aa11.7□□□□□ -0.54
CSMD1-211ENST00000523062 WIZO95785 1651 aa11.67□□□□□ -0.54
CSMD1-211ENST00000523062 C3orf67Q6ZVT6 689 aa11.63□□□□□ -0.55
CSMD1-211ENST00000523062 L3MBTL3Q96JM7 780 aaPredicted RBP11.63□□□□□ -0.55
CSMD1-211ENST00000523062 HS3ST6Q96QI5 342 aa11.62□□□□□ -0.55
CSMD1-211ENST00000523062 KRTAP3-3Q9BYR6 98 aa11.62□□□□□ -0.55
CSMD1-211ENST00000523062 KRTAP3-2Q9BYR7 98 aa11.62□□□□□ -0.55
CSMD1-211ENST00000523062 TOP2AP11388 1531 aaKnown RBP11.61□□□□□ -0.55
CSMD1-211ENST00000523062 FAM205CA6NFA0 338 aa11.59□□□□□ -0.55
CSMD1-211ENST00000523062 DCAF8Q5TAQ9 597 aa11.59□□□□□ -0.55
CSMD1-211ENST00000523062 PYGBP11216 843 aa11.58□□□□□ -0.56
CSMD1-211ENST00000523062 PCDHB8Q9UN66 801 aa11.58□□□□□ -0.56
CSMD1-211ENST00000523062 PEG3Q9GZU2 1588 aa11.58□□□□□ -0.56
CSMD1-211ENST00000523062 PDCD7Q8N8D1 485 aaKnown RBP11.57□□□□□ -0.56
CSMD1-211ENST00000523062 POTEB3A0JP26 581 aa11.56□□□□□ -0.56
CSMD1-211ENST00000523062 POTEBQ6S5H4 581 aa11.56□□□□□ -0.56
CSMD1-211ENST00000523062 GOLGA2Q08379 1002 aa11.53□□□□□ -0.56
CSMD1-211ENST00000523062 MKRN3Q13064 507 aaKnown RBP11.53□□□□□ -0.56
CSMD1-211ENST00000523062 SMARCA2P51531 1590 aa11.52□□□□□ -0.57
CSMD1-211ENST00000523062 ATAD2BQ9ULI0 1458 aa11.51□□□□□ -0.57
CSMD1-211ENST00000523062 EIF4G1Q04637 1599 aaKnown RBP11.47□□□□□ -0.57
CSMD1-211ENST00000523062 ZNF467Q7Z7K2 595 aaPredicted RBP11.47□□□□□ -0.57
CSMD1-211ENST00000523062 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.47□□□□□ -0.57
CSMD1-211ENST00000523062 CCDC88BA6NC98 1476 aa11.45□□□□□ -0.58
CSMD1-211ENST00000523062 BAZ1BQ9UIG0 1483 aaKnown RBP11.45□□□□□ -0.58
CSMD1-211ENST00000523062 HMGXB3Q12766 1538 aa11.4□□□□□ -0.58
CSMD1-211ENST00000523062 ILDR1Q86SU0 546 aaPredicted RBP11.39□□□□□ -0.59
CSMD1-211ENST00000523062 RNF166Q96A37 237 aaPredicted RBP11.39□□□□□ -0.59
CSMD1-211ENST00000523062 NCAPD3P42695 1498 aa11.38□□□□□ -0.59
CSMD1-211ENST00000523062 HOXB1P14653 301 aaPredicted RBP11.38□□□□□ -0.59
CSMD1-211ENST00000523062 HOXB3P14651 431 aaPredicted RBP11.37□□□□□ -0.59
CSMD1-211ENST00000523062 GSE1Q14687 1217 aa11.37□□□□□ -0.59
CSMD1-211ENST00000523062 ZNF710Q8N1W2 664 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms