RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 CFDP1Q9UEE9 299 aaPredicted RBP21.79■■□□□ 1.08
PCDHA3-201ENST00000522353 KIF27Q86VH2 1401 aa21.79■■□□□ 1.08
PCDHA3-201ENST00000522353 WRNQ14191 1432 aaPredicted RBP eCLIP21.78■■□□□ 1.08
PCDHA3-201ENST00000522353 HSP90AA1P07900 732 aaKnown RBP21.77■■□□□ 1.08
PCDHA3-201ENST00000522353 SALL2Q9Y467 1007 aaPredicted RBP21.76■■□□□ 1.07
PCDHA3-201ENST00000522353 GOLGA3Q08378 1498 aa21.73■■□□□ 1.07
PCDHA3-201ENST00000522353 HAP1P54257 671 aaPredicted RBP21.71■■□□□ 1.07
PCDHA3-201ENST00000522353 EIF4G2P78344 907 aaKnown RBP eCLIP21.71■■□□□ 1.07
PCDHA3-201ENST00000522353 ZBTB7CA1YPR0 619 aa21.71■■□□□ 1.07
PCDHA3-201ENST00000522353 MRS2Q9HD23 443 aa21.69■■□□□ 1.06
PCDHA3-201ENST00000522353 FKBP8Q14318 412 aa21.67■■□□□ 1.06
PCDHA3-201ENST00000522353 CDCA8Q53HL2 280 aa21.66■■□□□ 1.06
PCDHA3-201ENST00000522353 RGL3Q3MIN7 710 aa21.65■■□□□ 1.06
PCDHA3-201ENST00000522353 PLEKHG5O94827 1062 aa21.64■■□□□ 1.06
PCDHA3-201ENST00000522353 SENP3Q9H4L4 574 aaPredicted RBP21.64■■□□□ 1.06
PCDHA3-201ENST00000522353 MYH16Q9H6N6 1097 aa21.62■■□□□ 1.05
PCDHA3-201ENST00000522353 ANP32BQ92688 251 aaKnown RBP21.61■■□□□ 1.05
PCDHA3-201ENST00000522353 CFAP53Q96M91 514 aa21.59■■□□□ 1.05
PCDHA3-201ENST00000522353 TRHP20396 242 aaPredicted RBP21.57■■□□□ 1.04
PCDHA3-201ENST00000522353 CEP162Q5TB80 1403 aa21.56■■□□□ 1.04
PCDHA3-201ENST00000522353 CCDC136Q96JN2 1154 aa21.55■■□□□ 1.04
PCDHA3-201ENST00000522353 CEP164Q9UPV0 1460 aa21.54■■□□□ 1.04
PCDHA3-201ENST00000522353 BAZ1AQ9NRL2 1556 aaPredicted RBP21.54■■□□□ 1.04
PCDHA3-201ENST00000522353 POGKQ9P215 609 aa21.5■■□□□ 1.03
PCDHA3-201ENST00000522353 KNSTRNQ9Y448 316 aa21.5■■□□□ 1.03
PCDHA3-201ENST00000522353 HDGFP51858 240 aaKnown RBP21.47■■□□□ 1.03
PCDHA3-201ENST00000522353 TNIKQ9UKE5 1360 aa21.46■■□□□ 1.03
PCDHA3-201ENST00000522353 CCNB3Q8WWL7 1395 aa21.46■■□□□ 1.03
PCDHA3-201ENST00000522353 CARD11Q9BXL7 1154 aa21.45■■□□□ 1.02
PCDHA3-201ENST00000522353 LMOD2Q6P5Q4 547 aa21.44■■□□□ 1.02
PCDHA3-201ENST00000522353 HIRIP3Q9BW71 556 aaPredicted RBP21.43■■□□□ 1.02
PCDHA3-201ENST00000522353 MYO15BQ96JP2 1530 aa21.43■■□□□ 1.02
PCDHA3-201ENST00000522353 PPM1GO15355 546 aaPredicted RBP21.43■■□□□ 1.02
PCDHA3-201ENST00000522353 FHAD1B1AJZ9 1412 aa21.42■■□□□ 1.02
PCDHA3-201ENST00000522353 KANK1Q14678 1352 aa21.41■■□□□ 1.02
PCDHA3-201ENST00000522353 CARMIL1Q5VZK9 1371 aa21.4■■□□□ 1.02
PCDHA3-201ENST00000522353 NUDCQ9Y266 331 aa21.39■■□□□ 1.02
PCDHA3-201ENST00000522353 ARXQ96QS3 562 aa21.39■■□□□ 1.01
PCDHA3-201ENST00000522353 CUX2O14529 1486 aa21.37■■□□□ 1.01
PCDHA3-201ENST00000522353 PDS5BQ9NTI5 1447 aa21.36■■□□□ 1.01
PCDHA3-201ENST00000522353 MAPK8IP3Q9UPT6 1336 aa21.35■■□□□ 1.01
PCDHA3-201ENST00000522353 MLECQ14165 292 aa21.34■■□□□ 1.01
PCDHA3-201ENST00000522353 EIF4G1Q04637 1599 aaKnown RBP21.33■■□□□ 1
PCDHA3-201ENST00000522353 CARMIL2Q6F5E8 1435 aa21.32■■□□□ 1
PCDHA3-201ENST00000522353 MIER1Q8N108 512 aa21.26■□□□□ 0.99
PCDHA3-201ENST00000522353 CECR2Q9BXF3 1484 aa21.25■□□□□ 0.99
PCDHA3-201ENST00000522353 NPHP1O15259 732 aa21.24■□□□□ 0.99
PCDHA3-201ENST00000522353 PNNQ9H307 717 aaKnown RBP21.23■□□□□ 0.99
PCDHA3-201ENST00000522353 CDK11BP21127 795 aaKnown RBP21.22■□□□□ 0.99
PCDHA3-201ENST00000522353 GGT6Q6P531 493 aa21.21■□□□□ 0.99
PCDHA3-201ENST00000522353 FTSJ3Q8IY81 847 aaKnown RBP21.21■□□□□ 0.99
PCDHA3-201ENST00000522353 EIF5BO60841 1220 aaKnown RBP21.2■□□□□ 0.99
PCDHA3-201ENST00000522353 TMF1P82094 1093 aa21.2■□□□□ 0.98
PCDHA3-201ENST00000522353 NEUROD2Q15784 382 aa21.19■□□□□ 0.98
PCDHA3-201ENST00000522353 LAS1LQ9Y4W2 734 aaKnown RBP21.19■□□□□ 0.98
PCDHA3-201ENST00000522353 EFCAB2Q5VUJ9 269 aa21.18■□□□□ 0.98
PCDHA3-201ENST00000522353 SMARCA2P51531 1590 aa21.18■□□□□ 0.98
PCDHA3-201ENST00000522353 DCAF11Q8TEB1 546 aa21.18■□□□□ 0.98
PCDHA3-201ENST00000522353 CHMP4BQ9H444 224 aaKnown RBP21.17■□□□□ 0.98
PCDHA3-201ENST00000522353 SRPK2P78362 688 aaKnown RBP21.15■□□□□ 0.98
PCDHA3-201ENST00000522353 SOGA1O94964 1423 aa21.15■□□□□ 0.98
PCDHA3-201ENST00000522353 CASC1Q6TDU7 716 aa21.15■□□□□ 0.98
PCDHA3-201ENST00000522353 U2SURPO15042 1029 aaKnown RBP21.14■□□□□ 0.98
PCDHA3-201ENST00000522353 BECN1Q14457 450 aa21.14■□□□□ 0.97
PCDHA3-201ENST00000522353 TNNT2P45379 298 aaPredicted RBP21.13■□□□□ 0.97
PCDHA3-201ENST00000522353 IRX6P78412 446 aaPredicted RBP21.13■□□□□ 0.97
PCDHA3-201ENST00000522353 NCLP19338 710 aaKnown RBP21.12■□□□□ 0.97
PCDHA3-201ENST00000522353 SIN3AQ96ST3 1273 aa21.11■□□□□ 0.97
PCDHA3-201ENST00000522353 MS4A1P11836 297 aa21.1■□□□□ 0.97
PCDHA3-201ENST00000522353 DDRGK1Q96HY6 314 aa21.1■□□□□ 0.97
PCDHA3-201ENST00000522353 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
PCDHA3-201ENST00000522353 NBR1Q14596 966 aa21.09■□□□□ 0.97
PCDHA3-201ENST00000522353 TIMELESSQ9UNS1 1208 aa21.08■□□□□ 0.97
PCDHA3-201ENST00000522353 CC2D1BQ5T0F9 858 aaKnown RBP21.06■□□□□ 0.96
PCDHA3-201ENST00000522353 GOLGA6L22H0YM25 854 aa21.05■□□□□ 0.96
PCDHA3-201ENST00000522353 FMN1Q68DA7 1419 aa21.04■□□□□ 0.96
PCDHA3-201ENST00000522353 SOX12O15370 315 aa21.03■□□□□ 0.96
PCDHA3-201ENST00000522353 ANP32EQ9BTT0 268 aa21.03■□□□□ 0.96
PCDHA3-201ENST00000522353 ARHGAP35Q9NRY4 1499 aa21.03■□□□□ 0.96
PCDHA3-201ENST00000522353 HDGFL2Q7Z4V5 671 aaPredicted RBP21.03■□□□□ 0.96
PCDHA3-201ENST00000522353 OS9Q13438 667 aaPredicted RBP21.03■□□□□ 0.96
PCDHA3-201ENST00000522353 SAFB2Q14151 953 aaKnown RBP eCLIP21.03■□□□□ 0.96
PCDHA3-201ENST00000522353 PKD2Q13563 968 aa21.02■□□□□ 0.95
PCDHA3-201ENST00000522353 MORC1Q86VD1 984 aa21.02■□□□□ 0.95
PCDHA3-201ENST00000522353 CCDC88BA6NC98 1476 aa21.01■□□□□ 0.95
PCDHA3-201ENST00000522353 GOLGA2Q08379 1002 aa21■□□□□ 0.95
PCDHA3-201ENST00000522353 ZRSR1Q15695 479 aaKnown RBP21■□□□□ 0.95
PCDHA3-201ENST00000522353 STK26Q9P289 416 aa21■□□□□ 0.95
PCDHA3-201ENST00000522353 FRAT1Q92837 279 aaPredicted RBP20.99■□□□□ 0.95
PCDHA3-201ENST00000522353 CADPSQ9ULU8 1353 aa20.98■□□□□ 0.95
PCDHA3-201ENST00000522353 SENP3-EIF4A1A0A087X0R7 540 aa20.97■□□□□ 0.95
PCDHA3-201ENST00000522353 RTF1Q92541 710 aaKnown RBP20.97■□□□□ 0.95
PCDHA3-201ENST00000522353 ANKRD30AQ9BXX3 1397 aa20.96■□□□□ 0.95
PCDHA3-201ENST00000522353 RSPH4AQ5TD94 716 aa20.96■□□□□ 0.95
PCDHA3-201ENST00000522353 EID1Q9Y6B2 187 aa20.95■□□□□ 0.94
PCDHA3-201ENST00000522353 MROH2BQ7Z745 1585 aa20.94■□□□□ 0.94
PCDHA3-201ENST00000522353 GLIPR1L2Q4G1C9 344 aa20.94■□□□□ 0.94
PCDHA3-201ENST00000522353 VPS8Q8N3P4 1428 aa20.94■□□□□ 0.94
PCDHA3-201ENST00000522353 KIF3BO15066 747 aa20.94■□□□□ 0.94
PCDHA3-201ENST00000522353 SETD5Q9C0A6 1442 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms